Protein–RNA interactions for Protein: Q4QRL3

Ccdc88b, Coiled-coil domain-containing protein 88B, mousemouse

Predictions only

Length 1,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88bQ4QRL3 Vmn2r47-201ENSMUST00000170131 2559 ntAPPRIS P1 TSL 5 BASIC5□□□□□ -1.61
Ccdc88bQ4QRL3 Pak3-201ENSMUST00000033640 8348 ntAPPRIS ALT1 TSL 1 (best) BASIC5□□□□□ -1.61
Ccdc88bQ4QRL3 Gm14518-201ENSMUST00000117351 542 ntBASIC5□□□□□ -1.61
Ccdc88bQ4QRL3 Gm25456-201ENSMUST00000157952 109 ntBASIC5□□□□□ -1.61
Ccdc88bQ4QRL3 AC166323.1-201ENSMUST00000217756 367 ntBASIC5□□□□□ -1.61
Ccdc88bQ4QRL3 AC163621.2-201ENSMUST00000222229 682 ntBASIC5□□□□□ -1.61
Ccdc88bQ4QRL3 Gm36298-201ENSMUST00000223394 1732 ntBASIC5□□□□□ -1.61
Ccdc88bQ4QRL3 n-R5s40-201ENSMUST00000082475 124 ntBASIC5□□□□□ -1.61
Ccdc88bQ4QRL3 Olfr1161-203ENSMUST00000217006 3647 ntAPPRIS P1 TSL 5 BASIC4.99□□□□□ -1.61
Ccdc88bQ4QRL3 Olfr776-202ENSMUST00000213512 3499 ntAPPRIS P1 TSL 5 BASIC4.99□□□□□ -1.61
Ccdc88bQ4QRL3 AC124562.2-201ENSMUST00000223888 2313 ntBASIC4.99□□□□□ -1.61
Ccdc88bQ4QRL3 Olfr1249-202ENSMUST00000216124 3047 ntAPPRIS P1 TSL 5 BASIC4.99□□□□□ -1.61
Ccdc88bQ4QRL3 Ifi214-203ENSMUST00000139092 2888 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
Ccdc88bQ4QRL3 Vmn1r84-202ENSMUST00000226408 2898 ntAPPRIS ALT2 BASIC4.99□□□□□ -1.61
Ccdc88bQ4QRL3 Erbin-205ENSMUST00000188997 5084 ntAPPRIS ALT2 TSL 1 (best) BASIC4.99□□□□□ -1.61
Ccdc88bQ4QRL3 Olfr1437-202ENSMUST00000207241 3751 ntAPPRIS P1 TSL 2 BASIC4.99□□□□□ -1.61
Ccdc88bQ4QRL3 Gm12226-201ENSMUST00000144172 876 ntBASIC4.99□□□□□ -1.61
Ccdc88bQ4QRL3 Gm5926-201ENSMUST00000177740 711 ntAPPRIS P1 BASIC4.99□□□□□ -1.61
Ccdc88bQ4QRL3 Gm38075-201ENSMUST00000191979 920 ntBASIC4.99□□□□□ -1.61
Ccdc88bQ4QRL3 Mir378a-201ENSMUST00000198300 66 ntBASIC4.99□□□□□ -1.61
Ccdc88bQ4QRL3 5033403H07Rik-203ENSMUST00000198580 467 ntTSL 2 BASIC4.99□□□□□ -1.61
Ccdc88bQ4QRL3 Gm43746-201ENSMUST00000200028 317 ntBASIC4.99□□□□□ -1.61
Ccdc88bQ4QRL3 Tmed11-201ENSMUST00000004943 763 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
Ccdc88bQ4QRL3 Olfr1309-206ENSMUST00000217452 5257 ntAPPRIS P1 TSL 5 BASIC4.99□□□□□ -1.61
Ccdc88bQ4QRL3 Olfr1226-207ENSMUST00000220416 3387 ntAPPRIS P1 TSL 5 BASIC4.99□□□□□ -1.61
Ccdc88bQ4QRL3 Vmn1r72-203ENSMUST00000227010 6279 ntAPPRIS P1 BASIC4.98□□□□□ -1.61
Ccdc88bQ4QRL3 Neurod4-201ENSMUST00000061571 3345 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
Ccdc88bQ4QRL3 Olfr1193-203ENSMUST00000216767 3690 ntAPPRIS P1 TSL 5 BASIC4.98□□□□□ -1.61
Ccdc88bQ4QRL3 Mcmdc2-203ENSMUST00000125294 2003 ntTSL 5 BASIC4.98□□□□□ -1.61
Ccdc88bQ4QRL3 Gm6325-201ENSMUST00000122015 3114 ntBASIC4.98□□□□□ -1.61
Ccdc88bQ4QRL3 Igkv5-48-201ENSMUST00000103364 360 ntAPPRIS P1 BASIC4.98□□□□□ -1.61
Ccdc88bQ4QRL3 S100a5-201ENSMUST00000001049 422 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
Ccdc88bQ4QRL3 A630095N17Rik-201ENSMUST00000179573 648 ntAPPRIS ALT2 TSL 1 (best) BASIC4.98□□□□□ -1.61
Ccdc88bQ4QRL3 Olfr491-202ENSMUST00000209545 1944 ntAPPRIS P1 TSL 5 BASIC4.98□□□□□ -1.61
Ccdc88bQ4QRL3 Stag2-202ENSMUST00000115072 5955 ntAPPRIS P1 TSL 5 BASIC4.97□□□□□ -1.61
Ccdc88bQ4QRL3 Gm23911-201ENSMUST00000104596 134 ntBASIC4.97□□□□□ -1.61
Ccdc88bQ4QRL3 Pbsn-202ENSMUST00000114041 697 ntTSL 2 BASIC4.97□□□□□ -1.61
Ccdc88bQ4QRL3 Gm13009-201ENSMUST00000121307 267 ntBASIC4.97□□□□□ -1.61
Ccdc88bQ4QRL3 Mir1903-201ENSMUST00000122574 80 ntBASIC4.97□□□□□ -1.61
Ccdc88bQ4QRL3 Gm21893-201ENSMUST00000179119 397 ntBASIC4.97□□□□□ -1.61
Ccdc88bQ4QRL3 Olfr1245-201ENSMUST00000214870 1062 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
Ccdc88bQ4QRL3 AC167721.1-201ENSMUST00000217088 279 ntBASIC4.97□□□□□ -1.61
Ccdc88bQ4QRL3 Ms4a14-201ENSMUST00000187467 4065 ntAPPRIS P1 TSL 5 BASIC4.97□□□□□ -1.61
Ccdc88bQ4QRL3 Gm22782-201ENSMUST00000104082 132 ntBASIC4.96□□□□□ -1.62
Ccdc88bQ4QRL3 Olfr828-201ENSMUST00000104914 939 ntAPPRIS P1 BASIC4.96□□□□□ -1.62
Ccdc88bQ4QRL3 Olfr1073-ps1-201ENSMUST00000117635 381 ntBASIC4.96□□□□□ -1.62
Ccdc88bQ4QRL3 Olfr1117-ps1-201ENSMUST00000118736 984 ntAPPRIS P1 BASIC4.96□□□□□ -1.62
Ccdc88bQ4QRL3 4930401O12Rik-201ENSMUST00000153175 841 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
Ccdc88bQ4QRL3 Gm25280-201ENSMUST00000157269 101 ntBASIC4.96□□□□□ -1.62
Ccdc88bQ4QRL3 Gm7097-201ENSMUST00000161841 491 ntTSL 3 BASIC4.96□□□□□ -1.62
Ccdc88bQ4QRL3 AC127371.1-202ENSMUST00000228923 306 ntBASIC4.96□□□□□ -1.62
Ccdc88bQ4QRL3 Gm38090-201ENSMUST00000195733 1942 ntBASIC4.96□□□□□ -1.62
Ccdc88bQ4QRL3 Olfr1152-202ENSMUST00000213308 6201 ntAPPRIS P1 TSL 5 BASIC4.96□□□□□ -1.62
Ccdc88bQ4QRL3 Gm3584-201ENSMUST00000173822 2565 ntBASIC4.96□□□□□ -1.62
Ccdc88bQ4QRL3 Olfr1447-203ENSMUST00000216989 2586 ntAPPRIS P1 TSL 5 BASIC4.96□□□□□ -1.62
Ccdc88bQ4QRL3 Olfr65-201ENSMUST00000106864 2648 ntAPPRIS ALT1 TSL 5 BASIC4.95□□□□□ -1.62
Ccdc88bQ4QRL3 Gm25808-201ENSMUST00000122784 284 ntBASIC4.95□□□□□ -1.62
Ccdc88bQ4QRL3 Vmn1r160-201ENSMUST00000171745 924 ntAPPRIS P1 BASIC4.95□□□□□ -1.62
Ccdc88bQ4QRL3 Gm26928-201ENSMUST00000182674 572 ntBASIC4.95□□□□□ -1.62
Ccdc88bQ4QRL3 Gm6649-201ENSMUST00000199743 1165 ntBASIC4.95□□□□□ -1.62
Ccdc88bQ4QRL3 Gm45317-201ENSMUST00000210385 223 ntBASIC4.95□□□□□ -1.62
Ccdc88bQ4QRL3 Mir670hg-207ENSMUST00000211619 819 ntTSL 5 BASIC4.95□□□□□ -1.62
Ccdc88bQ4QRL3 Gm39380-201ENSMUST00000214710 192 ntTSL 5 BASIC4.95□□□□□ -1.62
Ccdc88bQ4QRL3 Olfr974-202ENSMUST00000213246 3561 ntAPPRIS P1 TSL 2 BASIC4.95□□□□□ -1.62
Ccdc88bQ4QRL3 Olfr1111-202ENSMUST00000214492 1616 ntAPPRIS P1 TSL 5 BASIC4.95□□□□□ -1.62
Ccdc88bQ4QRL3 Rab27b-203ENSMUST00000121693 6891 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
Ccdc88bQ4QRL3 Spef2-206ENSMUST00000208854 7038 ntAPPRIS ALT2 TSL 5 BASIC4.95□□□□□ -1.62
Ccdc88bQ4QRL3 Glra3-201ENSMUST00000000275 6508 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
Ccdc88bQ4QRL3 Ighv15-2-201ENSMUST00000103497 351 ntAPPRIS ALT2 BASIC4.94□□□□□ -1.62
Ccdc88bQ4QRL3 Gm11881-201ENSMUST00000119408 572 ntBASIC4.94□□□□□ -1.62
Ccdc88bQ4QRL3 Gm8430-201ENSMUST00000119780 471 ntBASIC4.94□□□□□ -1.62
Ccdc88bQ4QRL3 A630050E04Rik-201ENSMUST00000151443 581 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
Ccdc88bQ4QRL3 Gm21980-201ENSMUST00000180032 143 ntTSL 5 BASIC4.94□□□□□ -1.62
Ccdc88bQ4QRL3 Gm18692-201ENSMUST00000193047 511 ntBASIC4.94□□□□□ -1.62
Ccdc88bQ4QRL3 Gm36551-201ENSMUST00000196787 300 ntTSL 5 BASIC4.94□□□□□ -1.62
Ccdc88bQ4QRL3 Gm42896-201ENSMUST00000201249 1113 ntBASIC4.94□□□□□ -1.62
Ccdc88bQ4QRL3 Gm36377-201ENSMUST00000220833 757 ntTSL 2 BASIC4.94□□□□□ -1.62
Ccdc88bQ4QRL3 2900042G08Rik-201ENSMUST00000221776 650 ntBASIC4.94□□□□□ -1.62
Ccdc88bQ4QRL3 AC168059.2-201ENSMUST00000224473 333 ntBASIC4.94□□□□□ -1.62
Ccdc88bQ4QRL3 6720427I07Rik-201ENSMUST00000181490 2300 ntBASIC4.94□□□□□ -1.62
Ccdc88bQ4QRL3 Olfr1009-203ENSMUST00000216443 4047 ntAPPRIS P1 TSL 5 BASIC4.94□□□□□ -1.62
Ccdc88bQ4QRL3 Gm42785-201ENSMUST00000202316 3835 ntBASIC4.94□□□□□ -1.62
Ccdc88bQ4QRL3 Gm37041-201ENSMUST00000195873 3853 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
Ccdc88bQ4QRL3 Trav7-2-201ENSMUST00000103636 336 ntAPPRIS P1 BASIC4.94□□□□□ -1.62
Ccdc88bQ4QRL3 2210414B05Rik-201ENSMUST00000139600 872 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
Ccdc88bQ4QRL3 Rps24-202ENSMUST00000169826 519 ntAPPRIS ALT1 TSL 1 (best) BASIC4.94□□□□□ -1.62
Ccdc88bQ4QRL3 Gm17166-201ENSMUST00000172006 431 ntBASIC4.94□□□□□ -1.62
Ccdc88bQ4QRL3 Gm25360-201ENSMUST00000178786 191 ntBASIC4.94□□□□□ -1.62
Ccdc88bQ4QRL3 Gm28064-201ENSMUST00000185639 858 ntBASIC4.94□□□□□ -1.62
Ccdc88bQ4QRL3 Trav7d-2-201ENSMUST00000200127 337 ntAPPRIS P1 BASIC4.94□□□□□ -1.62
Ccdc88bQ4QRL3 Gm29521-204ENSMUST00000216859 279 ntTSL 5 BASIC4.94□□□□□ -1.62
Ccdc88bQ4QRL3 Sprr2f-201ENSMUST00000050397 609 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
Ccdc88bQ4QRL3 Etd-201ENSMUST00000074232 478 ntAPPRIS P1 TSL 2 BASIC4.94□□□□□ -1.62
Ccdc88bQ4QRL3 Gm22970-201ENSMUST00000083304 186 ntBASIC4.94□□□□□ -1.62
Ccdc88bQ4QRL3 Prl6a1-202ENSMUST00000091680 868 ntAPPRIS P2 TSL 1 (best) BASIC4.94□□□□□ -1.62
Ccdc88bQ4QRL3 Olfr1366-203ENSMUST00000205976 3112 ntAPPRIS ALT2 TSL 5 BASIC4.93□□□□□ -1.62
Ccdc88bQ4QRL3 Mier1-201ENSMUST00000030247 4703 ntAPPRIS P3 TSL 1 (best) BASIC4.93□□□□□ -1.62
Ccdc88bQ4QRL3 Olfr389-202ENSMUST00000124927 2781 ntAPPRIS P1 TSL 3 BASIC4.93□□□□□ -1.62
Ccdc88bQ4QRL3 Olfr1104-203ENSMUST00000215972 2797 ntAPPRIS P1 TSL 5 BASIC4.93□□□□□ -1.62
Ccdc88bQ4QRL3 Ddx60-201ENSMUST00000070631 6535 ntAPPRIS P2 TSL 5 BASIC4.93□□□□□ -1.62
Retrieved 100 of 76,532 protein–RNA pairs in 75.5 ms