Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Clec1b-203ENSMUST00000112081 614 ntAPPRIS ALT2 TSL 1 (best) BASIC5.34□□□□□ -1.55
Ddb1Q3U1J4 Gm7974-201ENSMUST00000117154 408 ntBASIC5.34□□□□□ -1.55
Ddb1Q3U1J4 Gm12016-201ENSMUST00000119079 681 ntBASIC5.34□□□□□ -1.55
Ddb1Q3U1J4 4930555B12Rik-201ENSMUST00000135444 283 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
Ddb1Q3U1J4 Gm14651-201ENSMUST00000147192 442 ntBASIC5.34□□□□□ -1.55
Ddb1Q3U1J4 Gm22156-201ENSMUST00000158409 141 ntBASIC5.34□□□□□ -1.55
Ddb1Q3U1J4 Gm22889-201ENSMUST00000158639 58 ntBASIC5.34□□□□□ -1.55
Ddb1Q3U1J4 Cylc2-203ENSMUST00000166749 1297 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
Ddb1Q3U1J4 Gm8220-203ENSMUST00000177877 381 ntTSL 5 BASIC5.34□□□□□ -1.55
Ddb1Q3U1J4 Gm26968-201ENSMUST00000182894 481 ntBASIC5.34□□□□□ -1.55
Ddb1Q3U1J4 Gm27457-201ENSMUST00000184771 156 ntBASIC5.34□□□□□ -1.55
Ddb1Q3U1J4 Gm27190-201ENSMUST00000184890 542 ntBASIC5.34□□□□□ -1.55
Ddb1Q3U1J4 Gm29552-201ENSMUST00000190548 660 ntBASIC5.34□□□□□ -1.55
Ddb1Q3U1J4 Gm18403-201ENSMUST00000192907 529 ntBASIC5.34□□□□□ -1.55
Ddb1Q3U1J4 Gm29704-201ENSMUST00000196011 253 ntBASIC5.34□□□□□ -1.55
Ddb1Q3U1J4 Gm42164-201ENSMUST00000198881 379 ntBASIC5.34□□□□□ -1.55
Ddb1Q3U1J4 AC122464.1-201ENSMUST00000202789 770 ntBASIC5.34□□□□□ -1.55
Ddb1Q3U1J4 Olfr783-ps1-201ENSMUST00000205105 441 ntBASIC5.34□□□□□ -1.55
Ddb1Q3U1J4 Gm45086-201ENSMUST00000209052 462 ntTSL 5 BASIC5.34□□□□□ -1.55
Ddb1Q3U1J4 AC069561.2-201ENSMUST00000217596 420 ntBASIC5.34□□□□□ -1.55
Ddb1Q3U1J4 Gm24147-201ENSMUST00000082763 144 ntBASIC5.34□□□□□ -1.55
Ddb1Q3U1J4 Gm15292-201ENSMUST00000098895 385 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
Ddb1Q3U1J4 Vmn1r6-203ENSMUST00000227131 8330 ntAPPRIS P2 BASIC5.34□□□□□ -1.55
Ddb1Q3U1J4 Olfr19-202ENSMUST00000206365 1967 ntAPPRIS P1 TSL 3 BASIC5.34□□□□□ -1.55
Ddb1Q3U1J4 Gm45804-201ENSMUST00000212137 3435 ntBASIC5.34□□□□□ -1.55
Ddb1Q3U1J4 Vmn2r83-201ENSMUST00000167976 2610 ntAPPRIS P1 TSL 5 BASIC5.34□□□□□ -1.55
Ddb1Q3U1J4 AC144772.3-201ENSMUST00000228829 3126 ntBASIC5.34□□□□□ -1.56
Ddb1Q3U1J4 Gm44434-201ENSMUST00000203918 3745 ntBASIC5.34□□□□□ -1.56
Ddb1Q3U1J4 Smgc-201ENSMUST00000088555 2977 ntAPPRIS P2 TSL 1 (best) BASIC5.34□□□□□ -1.56
Ddb1Q3U1J4 Vmn1r63-201ENSMUST00000075085 2172 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
Ddb1Q3U1J4 Gm37329-201ENSMUST00000192973 2057 ntBASIC5.33□□□□□ -1.56
Ddb1Q3U1J4 Kif20b-201ENSMUST00000087341 5564 ntAPPRIS P2 TSL 5 BASIC5.33□□□□□ -1.56
Ddb1Q3U1J4 Gm20515-201ENSMUST00000174440 4824 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
Ddb1Q3U1J4 Vmn1r52-207ENSMUST00000228394 3069 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
Ddb1Q3U1J4 Gm42842-201ENSMUST00000197736 3004 ntBASIC5.33□□□□□ -1.56
Ddb1Q3U1J4 Vmn1r197-203ENSMUST00000227017 5158 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
Ddb1Q3U1J4 Rgs5-201ENSMUST00000027997 4096 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
Ddb1Q3U1J4 Erv3-201ENSMUST00000040941 3378 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
Ddb1Q3U1J4 Igkv4-69-201ENSMUST00000103349 348 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
Ddb1Q3U1J4 Olfr133-201ENSMUST00000113636 1090 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
Ddb1Q3U1J4 Gm14981-201ENSMUST00000117325 943 ntBASIC5.33□□□□□ -1.56
Ddb1Q3U1J4 Gm15981-201ENSMUST00000119196 457 ntBASIC5.33□□□□□ -1.56
Ddb1Q3U1J4 Gm9043-201ENSMUST00000119677 314 ntBASIC5.33□□□□□ -1.56
Ddb1Q3U1J4 Gm14927-201ENSMUST00000120283 454 ntBASIC5.33□□□□□ -1.56
Ddb1Q3U1J4 Gm22320-201ENSMUST00000157149 312 ntBASIC5.33□□□□□ -1.56
Ddb1Q3U1J4 Gm25066-201ENSMUST00000158145 123 ntBASIC5.33□□□□□ -1.56
Ddb1Q3U1J4 Gm22398-201ENSMUST00000174941 125 ntBASIC5.33□□□□□ -1.56
Ddb1Q3U1J4 Gm26194-201ENSMUST00000175036 71 ntBASIC5.33□□□□□ -1.56
Ddb1Q3U1J4 Gm25731-201ENSMUST00000175167 125 ntBASIC5.33□□□□□ -1.56
Ddb1Q3U1J4 Vmn1r-ps23-201ENSMUST00000175708 295 ntBASIC5.33□□□□□ -1.56
Ddb1Q3U1J4 Vmn1r-ps151-201ENSMUST00000176956 982 ntBASIC5.33□□□□□ -1.56
Ddb1Q3U1J4 Gm24520-201ENSMUST00000179510 110 ntBASIC5.33□□□□□ -1.56
Ddb1Q3U1J4 Gm23379-201ENSMUST00000180026 107 ntBASIC5.33□□□□□ -1.56
Ddb1Q3U1J4 1700027I24Rik-201ENSMUST00000183612 696 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
Ddb1Q3U1J4 Gm27236-201ENSMUST00000184147 442 ntBASIC5.33□□□□□ -1.56
Ddb1Q3U1J4 Gm27538-201ENSMUST00000185065 294 ntBASIC5.33□□□□□ -1.56
Ddb1Q3U1J4 Gm28927-201ENSMUST00000191528 272 ntBASIC5.33□□□□□ -1.56
Ddb1Q3U1J4 Gm29038-201ENSMUST00000191543 678 ntBASIC5.33□□□□□ -1.56
Ddb1Q3U1J4 Gm37727-201ENSMUST00000191637 819 ntBASIC5.33□□□□□ -1.56
Ddb1Q3U1J4 Gm43574-201ENSMUST00000196226 809 ntTSL 3 BASIC5.33□□□□□ -1.56
Ddb1Q3U1J4 Gm42566-201ENSMUST00000197120 643 ntBASIC5.33□□□□□ -1.56
Ddb1Q3U1J4 Eif4e-205ENSMUST00000200100 729 ntTSL 3 BASIC5.33□□□□□ -1.56
Ddb1Q3U1J4 Gm8774-201ENSMUST00000203621 692 ntBASIC5.33□□□□□ -1.56
Ddb1Q3U1J4 Gm44611-201ENSMUST00000207507 355 ntBASIC5.33□□□□□ -1.56
Ddb1Q3U1J4 Gm19032-201ENSMUST00000208584 592 ntBASIC5.33□□□□□ -1.56
Ddb1Q3U1J4 AC159380.1-201ENSMUST00000218096 121 ntBASIC5.33□□□□□ -1.56
Ddb1Q3U1J4 4930556N09Rik-202ENSMUST00000219466 1015 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
Ddb1Q3U1J4 AC139750.2-201ENSMUST00000224424 386 ntBASIC5.33□□□□□ -1.56
Ddb1Q3U1J4 AC160999.1-201ENSMUST00000225675 810 ntBASIC5.33□□□□□ -1.56
Ddb1Q3U1J4 Ifnk-201ENSMUST00000058595 805 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
Ddb1Q3U1J4 Olfr1136-201ENSMUST00000077471 1067 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
Ddb1Q3U1J4 Gm24928-201ENSMUST00000083399 107 ntBASIC5.33□□□□□ -1.56
Ddb1Q3U1J4 Gm25897-201ENSMUST00000083709 107 ntBASIC5.33□□□□□ -1.56
Ddb1Q3U1J4 A530099J19Rik-201ENSMUST00000151029 2764 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
Ddb1Q3U1J4 AC124586.1-201ENSMUST00000221673 2795 ntBASIC5.33□□□□□ -1.56
Ddb1Q3U1J4 Vmn1r215-202ENSMUST00000228092 2790 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
Ddb1Q3U1J4 Olfr128-202ENSMUST00000216440 3644 ntAPPRIS P1 TSL 5 BASIC5.33□□□□□ -1.56
Ddb1Q3U1J4 Olfr753-ps1-201ENSMUST00000174025 3121 ntAPPRIS P1 TSL 3 BASIC5.33□□□□□ -1.56
Ddb1Q3U1J4 Efhc2-201ENSMUST00000026014 2554 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
Ddb1Q3U1J4 Olfr799-205ENSMUST00000217364 1580 ntAPPRIS P1 TSL 5 BASIC5.33□□□□□ -1.56
Ddb1Q3U1J4 Fscb-201ENSMUST00000059833 3361 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
Ddb1Q3U1J4 Atad1-201ENSMUST00000070210 2813 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
Ddb1Q3U1J4 Olfr916-203ENSMUST00000214093 3685 ntAPPRIS P1 TSL 3 BASIC5.33□□□□□ -1.56
Ddb1Q3U1J4 Tex47-202ENSMUST00000159546 1402 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
Ddb1Q3U1J4 Speer5-ps1-201ENSMUST00000169525 1430 ntBASIC5.32□□□□□ -1.56
Ddb1Q3U1J4 Gm13103-201ENSMUST00000094522 1833 ntAPPRIS P2 TSL 1 (best) BASIC5.32□□□□□ -1.56
Ddb1Q3U1J4 Gm29730-201ENSMUST00000192986 1396 ntBASIC5.32□□□□□ -1.56
Ddb1Q3U1J4 Gpr174-203ENSMUST00000118820 5112 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
Ddb1Q3U1J4 Gm37639-201ENSMUST00000191623 2785 ntBASIC5.32□□□□□ -1.56
Ddb1Q3U1J4 Defa-ps9-201ENSMUST00000118264 276 ntBASIC5.32□□□□□ -1.56
Ddb1Q3U1J4 Gm13785-201ENSMUST00000119099 690 ntBASIC5.32□□□□□ -1.56
Ddb1Q3U1J4 Olfr1298-201ENSMUST00000119566 939 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
Ddb1Q3U1J4 Gm12067-201ENSMUST00000119755 1148 ntBASIC5.32□□□□□ -1.56
Ddb1Q3U1J4 Gm14637-201ENSMUST00000156516 444 ntTSL 2 BASIC5.32□□□□□ -1.56
Ddb1Q3U1J4 Gm16318-201ENSMUST00000162402 601 ntBASIC5.32□□□□□ -1.56
Ddb1Q3U1J4 Gm17054-201ENSMUST00000169811 259 ntBASIC5.32□□□□□ -1.56
Ddb1Q3U1J4 Gm17060-201ENSMUST00000172394 824 ntBASIC5.32□□□□□ -1.56
Ddb1Q3U1J4 D830030K20Rik-202ENSMUST00000178670 441 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
Ddb1Q3U1J4 Gm21638-201ENSMUST00000179473 836 ntBASIC5.32□□□□□ -1.56
Ddb1Q3U1J4 Gm25412-201ENSMUST00000180258 107 ntBASIC5.32□□□□□ -1.56
Retrieved 100 of 76,532 protein–RNA pairs in 82.3 ms