Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Gm29111-201ENSMUST00000188823 696 ntBASIC6.16□□□□□ -1.42
Rnf40Q3U319 Gm28584-201ENSMUST00000191489 696 ntBASIC6.16□□□□□ -1.42
Rnf40Q3U319 Gm38138-201ENSMUST00000193274 696 ntBASIC6.16□□□□□ -1.42
Rnf40Q3U319 Gm44473-201ENSMUST00000204039 152 ntBASIC6.16□□□□□ -1.42
Rnf40Q3U319 Gm6575-201ENSMUST00000222946 697 ntBASIC6.16□□□□□ -1.42
Rnf40Q3U319 AC154527.1-201ENSMUST00000225809 242 ntBASIC6.16□□□□□ -1.42
Rnf40Q3U319 Fpgt-201ENSMUST00000066568 3518 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
Rnf40Q3U319 Serpinb3b-202ENSMUST00000166100 1632 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
Rnf40Q3U319 Ccdc73-201ENSMUST00000111114 3944 ntAPPRIS P1 TSL 5 BASIC6.16□□□□□ -1.42
Rnf40Q3U319 Olfr390-202ENSMUST00000120081 3604 ntAPPRIS P1 TSL 2 BASIC6.16□□□□□ -1.42
Rnf40Q3U319 Gm37488-201ENSMUST00000195434 3374 ntBASIC6.16□□□□□ -1.42
Rnf40Q3U319 Spef2-201ENSMUST00000041840 4247 ntAPPRIS P2 TSL 1 (best) BASIC6.16□□□□□ -1.42
Rnf40Q3U319 Spag5-201ENSMUST00000045026 3887 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
Rnf40Q3U319 Slamf6-201ENSMUST00000171330 2485 ntAPPRIS P3 TSL 1 (best) BASIC6.16□□□□□ -1.42
Rnf40Q3U319 Usp29-204ENSMUST00000200535 7540 ntAPPRIS P1 TSL 5 BASIC6.15□□□□□ -1.42
Rnf40Q3U319 Mef2c-212ENSMUST00000197146 6088 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
Rnf40Q3U319 Olfr1250-203ENSMUST00000215730 4632 ntAPPRIS P1 TSL 5 BASIC6.15□□□□□ -1.42
Rnf40Q3U319 Gm44860-201ENSMUST00000208473 2346 ntBASIC6.15□□□□□ -1.42
Rnf40Q3U319 Bclaf1-203ENSMUST00000185800 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC6.15□□□□□ -1.42
Rnf40Q3U319 Gm37879-201ENSMUST00000193112 1995 ntBASIC6.15□□□□□ -1.42
Rnf40Q3U319 AC137842.3-201ENSMUST00000228855 2397 ntBASIC6.15□□□□□ -1.42
Rnf40Q3U319 Olfr329-ps-203ENSMUST00000219448 4052 ntAPPRIS P2 TSL 5 BASIC6.15□□□□□ -1.42
Rnf40Q3U319 Usp26-202ENSMUST00000114869 4133 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
Rnf40Q3U319 Gm13212-203ENSMUST00000119718 2498 ntTSL 5 BASIC6.15□□□□□ -1.42
Rnf40Q3U319 Mrc1-201ENSMUST00000028045 5374 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
Rnf40Q3U319 Gm26300-201ENSMUST00000102282 94 ntBASIC6.15□□□□□ -1.42
Rnf40Q3U319 Gm15560-201ENSMUST00000117107 643 ntBASIC6.15□□□□□ -1.42
Rnf40Q3U319 Gm13455-201ENSMUST00000118767 517 ntBASIC6.15□□□□□ -1.42
Rnf40Q3U319 Gm12156-201ENSMUST00000119188 554 ntBASIC6.15□□□□□ -1.42
Rnf40Q3U319 Hmgb1-ps6-201ENSMUST00000119503 616 ntBASIC6.15□□□□□ -1.42
Rnf40Q3U319 Gm13214-201ENSMUST00000122137 408 ntBASIC6.15□□□□□ -1.42
Rnf40Q3U319 Gm13424-201ENSMUST00000122301 354 ntBASIC6.15□□□□□ -1.42
Rnf40Q3U319 1700057H15Rik-201ENSMUST00000127913 595 ntTSL 3 BASIC6.15□□□□□ -1.42
Rnf40Q3U319 Cav1-209ENSMUST00000150901 380 ntTSL 2 BASIC6.15□□□□□ -1.42
Rnf40Q3U319 Gm26149-201ENSMUST00000157432 108 ntBASIC6.15□□□□□ -1.42
Rnf40Q3U319 Serpina3e-ps-201ENSMUST00000165968 1228 ntBASIC6.15□□□□□ -1.42
Rnf40Q3U319 Gm24085-201ENSMUST00000175172 116 ntBASIC6.15□□□□□ -1.42
Rnf40Q3U319 Gm26972-201ENSMUST00000183218 344 ntTSL 3 BASIC6.15□□□□□ -1.42
Rnf40Q3U319 Gm27476-201ENSMUST00000183366 104 ntBASIC6.15□□□□□ -1.42
Rnf40Q3U319 Mir6346-201ENSMUST00000183982 81 ntBASIC6.15□□□□□ -1.42
Rnf40Q3U319 Gm28920-201ENSMUST00000189957 699 ntBASIC6.15□□□□□ -1.42
Rnf40Q3U319 Ighv1-6-201ENSMUST00000193849 293 ntBASIC6.15□□□□□ -1.42
Rnf40Q3U319 Gm34073-201ENSMUST00000195736 212 ntBASIC6.15□□□□□ -1.42
Rnf40Q3U319 Gm44206-201ENSMUST00000203044 592 ntTSL 5 BASIC6.15□□□□□ -1.42
Rnf40Q3U319 Gm44533-201ENSMUST00000207782 268 ntBASIC6.15□□□□□ -1.42
Rnf40Q3U319 Gm32817-201ENSMUST00000210007 689 ntTSL 5 BASIC6.15□□□□□ -1.42
Rnf40Q3U319 2010107E04Rik-201ENSMUST00000021719 366 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
Rnf40Q3U319 AC153505.2-201ENSMUST00000217741 277 ntBASIC6.15□□□□□ -1.42
Rnf40Q3U319 AC192616.2-201ENSMUST00000221482 3841 ntBASIC6.15□□□□□ -1.42
Rnf40Q3U319 Olfr535-201ENSMUST00000074897 991 ntAPPRIS P1 BASIC6.15□□□□□ -1.42
Rnf40Q3U319 Olfr346-201ENSMUST00000078854 930 ntAPPRIS P1 BASIC6.15□□□□□ -1.42
Rnf40Q3U319 Trim6-201ENSMUST00000098180 3827 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
Rnf40Q3U319 Ryr3-211ENSMUST00000208290 15468 ntAPPRIS P3 TSL 5 BASIC6.15□□□□□ -1.43
Rnf40Q3U319 Olfr118-203ENSMUST00000216551 1772 ntAPPRIS P1 TSL 5 BASIC6.15□□□□□ -1.43
Rnf40Q3U319 B530045E10Rik-202ENSMUST00000189035 3138 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
Rnf40Q3U319 Gm9077-201ENSMUST00000210657 2298 ntBASIC6.15□□□□□ -1.43
Rnf40Q3U319 Trim5-202ENSMUST00000098179 3655 ntAPPRIS P2 TSL 1 (best) BASIC6.15□□□□□ -1.43
Rnf40Q3U319 Lgi1-207ENSMUST00000198518 7780 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.43
Rnf40Q3U319 Olfr328-204ENSMUST00000216725 2904 ntAPPRIS P1 TSL 5 BASIC6.15□□□□□ -1.43
Rnf40Q3U319 Zbtb20-204ENSMUST00000114694 26901 ntAPPRIS P3 TSL 5 BASIC6.14□□□□□ -1.43
Rnf40Q3U319 Xlr3c-201ENSMUST00000080839 1584 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
Rnf40Q3U319 Sis-201ENSMUST00000094190 5887 ntAPPRIS P1 TSL 2 BASIC6.14□□□□□ -1.43
Rnf40Q3U319 Cpne4-202ENSMUST00000077190 3409 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
Rnf40Q3U319 Gm36298-201ENSMUST00000223394 1732 ntBASIC6.14□□□□□ -1.43
Rnf40Q3U319 Mdn1-211ENSMUST00000178134 17959 ntAPPRIS P2 TSL 5 BASIC6.14□□□□□ -1.43
Rnf40Q3U319 Gm38299-201ENSMUST00000193214 3789 ntBASIC6.14□□□□□ -1.43
Rnf40Q3U319 Igkv4-63-201ENSMUST00000103351 286 ntAPPRIS P1 BASIC6.14□□□□□ -1.43
Rnf40Q3U319 Igkv1-35-201ENSMUST00000103374 359 ntAPPRIS ALT2 BASIC6.14□□□□□ -1.43
Rnf40Q3U319 Igkv8-18-201ENSMUST00000103390 395 ntAPPRIS P1 BASIC6.14□□□□□ -1.43
Rnf40Q3U319 Gm25344-201ENSMUST00000104503 132 ntBASIC6.14□□□□□ -1.43
Rnf40Q3U319 Gm13141-201ENSMUST00000117417 456 ntBASIC6.14□□□□□ -1.43
Rnf40Q3U319 Gm6897-201ENSMUST00000117714 138 ntBASIC6.14□□□□□ -1.43
Rnf40Q3U319 Hspe1-ps5-201ENSMUST00000118080 297 ntBASIC6.14□□□□□ -1.43
Rnf40Q3U319 Gm11490-201ENSMUST00000118128 272 ntBASIC6.14□□□□□ -1.43
Rnf40Q3U319 Gm14758-201ENSMUST00000119104 138 ntBASIC6.14□□□□□ -1.43
Rnf40Q3U319 Gm14267-201ENSMUST00000119751 496 ntBASIC6.14□□□□□ -1.43
Rnf40Q3U319 Gm14977-201ENSMUST00000121626 812 ntBASIC6.14□□□□□ -1.43
Rnf40Q3U319 n-R5s80-201ENSMUST00000122596 111 ntBASIC6.14□□□□□ -1.43
Rnf40Q3U319 Gm24630-201ENSMUST00000122768 106 ntBASIC6.14□□□□□ -1.43
Rnf40Q3U319 Platr27-201ENSMUST00000131365 629 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
Rnf40Q3U319 1700047F07Rik-201ENSMUST00000140321 543 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
Rnf40Q3U319 E130111B04Rik-201ENSMUST00000156781 450 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
Rnf40Q3U319 Gm24060-201ENSMUST00000157494 95 ntBASIC6.14□□□□□ -1.43
Rnf40Q3U319 Gm25487-201ENSMUST00000158725 125 ntBASIC6.14□□□□□ -1.43
Rnf40Q3U319 Gm16125-201ENSMUST00000159003 339 ntBASIC6.14□□□□□ -1.43
Rnf40Q3U319 Gm26501-201ENSMUST00000178307 107 ntBASIC6.14□□□□□ -1.43
Rnf40Q3U319 1700123O21Rik-201ENSMUST00000190515 677 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
Rnf40Q3U319 Gm28181-201ENSMUST00000191460 687 ntTSL 3 BASIC6.14□□□□□ -1.43
Rnf40Q3U319 Gm36934-201ENSMUST00000192007 306 ntBASIC6.14□□□□□ -1.43
Rnf40Q3U319 Gm37624-201ENSMUST00000193751 219 ntBASIC6.14□□□□□ -1.43
Rnf40Q3U319 Gm18427-201ENSMUST00000195422 515 ntBASIC6.14□□□□□ -1.43
Rnf40Q3U319 Gm17822-201ENSMUST00000204307 351 ntBASIC6.14□□□□□ -1.43
Rnf40Q3U319 AC124739.2-201ENSMUST00000222201 109 ntBASIC6.14□□□□□ -1.43
Rnf40Q3U319 Rpl29-ps2-201ENSMUST00000086508 478 ntBASIC6.14□□□□□ -1.43
Rnf40Q3U319 Ccl26-201ENSMUST00000094226 282 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
Rnf40Q3U319 Gm10813-201ENSMUST00000099936 90 ntBASIC6.14□□□□□ -1.43
Rnf40Q3U319 Slc38a4-201ENSMUST00000023101 3932 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
Rnf40Q3U319 Cep70-201ENSMUST00000093795 2606 ntAPPRIS P2 TSL 1 (best) BASIC6.14□□□□□ -1.43
Rnf40Q3U319 Gm37049-201ENSMUST00000194356 1983 ntBASIC6.14□□□□□ -1.43
Rnf40Q3U319 Zfp638-220ENSMUST00000204751 9033 ntAPPRIS P3 TSL 1 (best) BASIC6.14□□□□□ -1.43
Retrieved 100 of 76,532 protein–RNA pairs in 80 ms