Protein–RNA interactions for Protein: Q4QRL3

Ccdc88b, Coiled-coil domain-containing protein 88B, mousemouse

Predictions only

Length 1,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88bQ4QRL3 Tsga10-204ENSMUST00000123082 3953 ntAPPRIS ALT2 TSL 1 (best) BASIC5.13□□□□□ -1.59
Ccdc88bQ4QRL3 E430014B02Rik-201ENSMUST00000194215 3156 ntBASIC5.13□□□□□ -1.59
Ccdc88bQ4QRL3 Trdn-208ENSMUST00000219982 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC5.13□□□□□ -1.59
Ccdc88bQ4QRL3 Vmn1r66-204ENSMUST00000228086 3013 ntAPPRIS P1 BASIC5.13□□□□□ -1.59
Ccdc88bQ4QRL3 Olfr1277-202ENSMUST00000214760 5944 ntAPPRIS P1 TSL 5 BASIC5.13□□□□□ -1.59
Ccdc88bQ4QRL3 Olfr1058-201ENSMUST00000102631 951 ntAPPRIS P1 BASIC5.13□□□□□ -1.59
Ccdc88bQ4QRL3 Ighv1-54-201ENSMUST00000103525 377 ntAPPRIS P1 BASIC5.13□□□□□ -1.59
Ccdc88bQ4QRL3 Gm24122-201ENSMUST00000104107 132 ntBASIC5.13□□□□□ -1.59
Ccdc88bQ4QRL3 Gm14403-202ENSMUST00000108947 1209 ntAPPRIS P1 TSL 5 BASIC5.13□□□□□ -1.59
Ccdc88bQ4QRL3 Gm8569-201ENSMUST00000117630 647 ntBASIC5.13□□□□□ -1.59
Ccdc88bQ4QRL3 Gm5754-201ENSMUST00000118774 892 ntBASIC5.13□□□□□ -1.59
Ccdc88bQ4QRL3 Gm12788-201ENSMUST00000119090 308 ntBASIC5.13□□□□□ -1.59
Ccdc88bQ4QRL3 Scgb2b17-203ENSMUST00000182673 434 ntAPPRIS P2 TSL 2 BASIC5.13□□□□□ -1.59
Ccdc88bQ4QRL3 Scgb2b15-201ENSMUST00000182975 434 ntAPPRIS P1 TSL 2 BASIC5.13□□□□□ -1.59
Ccdc88bQ4QRL3 Gm25820-201ENSMUST00000198589 127 ntBASIC5.13□□□□□ -1.59
Ccdc88bQ4QRL3 Gm45252-201ENSMUST00000211579 397 ntBASIC5.13□□□□□ -1.59
Ccdc88bQ4QRL3 Gm10484-201ENSMUST00000196372 4759 ntBASIC5.12□□□□□ -1.59
Ccdc88bQ4QRL3 Lrrtm2-201ENSMUST00000091636 5665 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
Ccdc88bQ4QRL3 Olfr1202-202ENSMUST00000214703 3665 ntAPPRIS P1 TSL 5 BASIC5.12□□□□□ -1.59
Ccdc88bQ4QRL3 Olfr1206-202ENSMUST00000216950 3303 ntAPPRIS P1 TSL 5 BASIC5.12□□□□□ -1.59
Ccdc88bQ4QRL3 Mir291a-201ENSMUST00000104815 82 ntBASIC5.12□□□□□ -1.59
Ccdc88bQ4QRL3 1700123O12Rik-203ENSMUST00000145856 425 ntTSL 5 BASIC5.12□□□□□ -1.59
Ccdc88bQ4QRL3 Gm20456-201ENSMUST00000174690 385 ntTSL 5 BASIC5.12□□□□□ -1.59
Ccdc88bQ4QRL3 Gm42850-201ENSMUST00000202094 201 ntBASIC5.12□□□□□ -1.59
Ccdc88bQ4QRL3 Tpbpb-201ENSMUST00000080766 850 ntAPPRIS P2 TSL 1 (best) BASIC5.12□□□□□ -1.59
Ccdc88bQ4QRL3 Rps15a-ps2-201ENSMUST00000087473 393 ntBASIC5.12□□□□□ -1.59
Ccdc88bQ4QRL3 Olfr235-203ENSMUST00000214551 2240 ntAPPRIS P1 TSL 5 BASIC5.12□□□□□ -1.59
Ccdc88bQ4QRL3 Gm12667-201ENSMUST00000118299 1332 ntBASIC5.12□□□□□ -1.59
Ccdc88bQ4QRL3 Ccdc178-202ENSMUST00000115837 2979 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
Ccdc88bQ4QRL3 Btla-202ENSMUST00000102802 3251 ntAPPRIS ALT2 TSL 1 (best) BASIC5.11□□□□□ -1.59
Ccdc88bQ4QRL3 Gm20139-202ENSMUST00000216041 3888 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
Ccdc88bQ4QRL3 Olfr69-201ENSMUST00000106878 2829 ntAPPRIS P1 TSL 5 BASIC5.11□□□□□ -1.59
Ccdc88bQ4QRL3 Gm11387-201ENSMUST00000120266 772 ntBASIC5.11□□□□□ -1.59
Ccdc88bQ4QRL3 Gm12001-201ENSMUST00000121727 913 ntBASIC5.11□□□□□ -1.59
Ccdc88bQ4QRL3 4930461G14Rik-201ENSMUST00000181967 843 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
Ccdc88bQ4QRL3 Ighv1-40-201ENSMUST00000194231 345 ntBASIC5.11□□□□□ -1.59
Ccdc88bQ4QRL3 Ighv1-17-1-201ENSMUST00000194849 351 ntBASIC5.11□□□□□ -1.59
Ccdc88bQ4QRL3 Gm6064-201ENSMUST00000203999 454 ntBASIC5.11□□□□□ -1.59
Ccdc88bQ4QRL3 Gm38997-201ENSMUST00000205669 304 ntTSL 5 BASIC5.11□□□□□ -1.59
Ccdc88bQ4QRL3 Gm21112-201ENSMUST00000212224 578 ntBASIC5.11□□□□□ -1.59
Ccdc88bQ4QRL3 Gm7760-201ENSMUST00000212265 578 ntBASIC5.11□□□□□ -1.59
Ccdc88bQ4QRL3 Olfr767-201ENSMUST00000082131 1086 ntAPPRIS P1 BASIC5.11□□□□□ -1.59
Ccdc88bQ4QRL3 Zfp518a-201ENSMUST00000050092 6840 ntAPPRIS P1 TSL 2 BASIC5.11□□□□□ -1.59
Ccdc88bQ4QRL3 Gm45178-201ENSMUST00000207744 4110 ntBASIC5.11□□□□□ -1.59
Ccdc88bQ4QRL3 Pak3-204ENSMUST00000112865 8484 ntAPPRIS P3 TSL 5 BASIC5.11□□□□□ -1.59
Ccdc88bQ4QRL3 AC153365.1-201ENSMUST00000219016 2031 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
Ccdc88bQ4QRL3 Gpr34-202ENSMUST00000096492 1898 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
Ccdc88bQ4QRL3 Olfr1370-203ENSMUST00000215357 4285 ntAPPRIS P1 TSL 5 BASIC5.1□□□□□ -1.59
Ccdc88bQ4QRL3 Gm45264-201ENSMUST00000210090 3995 ntBASIC5.1□□□□□ -1.59
Ccdc88bQ4QRL3 Olfr843-202ENSMUST00000214019 7499 ntAPPRIS P1 TSL 5 BASIC5.1□□□□□ -1.59
Ccdc88bQ4QRL3 Gm2033-201ENSMUST00000210753 2287 ntBASIC5.1□□□□□ -1.59
Ccdc88bQ4QRL3 Gm4468-201ENSMUST00000170206 294 ntBASIC5.1□□□□□ -1.59
Ccdc88bQ4QRL3 Pip-202ENSMUST00000203244 736 ntTSL 3 BASIC5.1□□□□□ -1.59
Ccdc88bQ4QRL3 Gm44012-201ENSMUST00000204154 424 ntTSL 3 BASIC5.1□□□□□ -1.59
Ccdc88bQ4QRL3 Gm44526-201ENSMUST00000204664 121 ntBASIC5.1□□□□□ -1.59
Ccdc88bQ4QRL3 Gm5176-202ENSMUST00000220267 583 ntBASIC5.1□□□□□ -1.59
Ccdc88bQ4QRL3 AC122924.1-201ENSMUST00000222044 163 ntBASIC5.1□□□□□ -1.59
Ccdc88bQ4QRL3 Olfr1444-201ENSMUST00000059675 1129 ntAPPRIS P1 BASIC5.1□□□□□ -1.59
Ccdc88bQ4QRL3 Zfp280c-204ENSMUST00000114940 3863 ntAPPRIS ALT2 TSL 1 (best) BASIC5.1□□□□□ -1.59
Ccdc88bQ4QRL3 Macc1-205ENSMUST00000222784 4710 ntAPPRIS P1 TSL 5 BASIC5.1□□□□□ -1.59
Ccdc88bQ4QRL3 Vmn1r74-202ENSMUST00000228471 6608 ntAPPRIS P1 BASIC5.1□□□□□ -1.59
Ccdc88bQ4QRL3 Olfr1228-202ENSMUST00000215447 3223 ntAPPRIS ALT2 TSL 2 BASIC5.1□□□□□ -1.59
Ccdc88bQ4QRL3 Olfr1454-203ENSMUST00000214695 4049 ntAPPRIS P1 TSL 5 BASIC5.09□□□□□ -1.59
Ccdc88bQ4QRL3 Tcrg-V5-201ENSMUST00000103556 293 ntAPPRIS P1 BASIC5.09□□□□□ -1.59
Ccdc88bQ4QRL3 Gm12865-201ENSMUST00000137353 326 ntTSL 2 BASIC5.09□□□□□ -1.59
Ccdc88bQ4QRL3 Gm24930-201ENSMUST00000158315 83 ntBASIC5.09□□□□□ -1.59
Ccdc88bQ4QRL3 Gm22666-201ENSMUST00000158717 164 ntBASIC5.09□□□□□ -1.59
Ccdc88bQ4QRL3 Gm20651-201ENSMUST00000177219 329 ntBASIC5.09□□□□□ -1.59
Ccdc88bQ4QRL3 Gm4859-201ENSMUST00000199625 787 ntBASIC5.09□□□□□ -1.59
Ccdc88bQ4QRL3 Gm44688-201ENSMUST00000209083 537 ntBASIC5.09□□□□□ -1.59
Ccdc88bQ4QRL3 AC168266.1-201ENSMUST00000216024 226 ntBASIC5.09□□□□□ -1.59
Ccdc88bQ4QRL3 AC091764.1-201ENSMUST00000218029 132 ntTSL 5 BASIC5.09□□□□□ -1.59
Ccdc88bQ4QRL3 Gm25581-201ENSMUST00000083410 164 ntBASIC5.09□□□□□ -1.59
Ccdc88bQ4QRL3 C230031I18Rik-201ENSMUST00000197856 3698 ntBASIC5.09□□□□□ -1.6
Ccdc88bQ4QRL3 Vmn1r84-201ENSMUST00000086228 2452 ntAPPRIS P2 BASIC5.09□□□□□ -1.6
Ccdc88bQ4QRL3 Gm18337-201ENSMUST00000219023 5762 ntBASIC5.08□□□□□ -1.6
Ccdc88bQ4QRL3 Skint3-201ENSMUST00000038455 3627 ntAPPRIS P3 TSL 1 (best) BASIC5.08□□□□□ -1.6
Ccdc88bQ4QRL3 Gm8260-201ENSMUST00000119230 353 ntBASIC5.08□□□□□ -1.6
Ccdc88bQ4QRL3 Gm22141-201ENSMUST00000157403 277 ntBASIC5.08□□□□□ -1.6
Ccdc88bQ4QRL3 Scgb2b21-201ENSMUST00000185407 520 ntAPPRIS P1 TSL 5 BASIC5.08□□□□□ -1.6
Ccdc88bQ4QRL3 Gm8392-201ENSMUST00000185647 835 ntBASIC5.08□□□□□ -1.6
Ccdc88bQ4QRL3 1810044D09Rik-201ENSMUST00000186472 486 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
Ccdc88bQ4QRL3 AC160134.1-201ENSMUST00000213450 551 ntBASIC5.08□□□□□ -1.6
Ccdc88bQ4QRL3 S100z-201ENSMUST00000022186 399 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
Ccdc88bQ4QRL3 AC139294.1-201ENSMUST00000226708 571 ntBASIC5.08□□□□□ -1.6
Ccdc88bQ4QRL3 Bcl2a1c-201ENSMUST00000066460 444 ntAPPRIS P1 BASIC5.08□□□□□ -1.6
Ccdc88bQ4QRL3 Olfr1056-202ENSMUST00000216547 2213 ntAPPRIS P1 TSL 5 BASIC5.08□□□□□ -1.6
Ccdc88bQ4QRL3 A330044P14Rik-201ENSMUST00000176108 2706 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
Ccdc88bQ4QRL3 Olfr1309-203ENSMUST00000214935 5448 ntAPPRIS P1 TSL 5 BASIC5.07□□□□□ -1.6
Ccdc88bQ4QRL3 Gm25270-201ENSMUST00000122606 138 ntBASIC5.07□□□□□ -1.6
Ccdc88bQ4QRL3 4930597A21Rik-201ENSMUST00000128652 698 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
Ccdc88bQ4QRL3 Mir3075-201ENSMUST00000175340 85 ntBASIC5.07□□□□□ -1.6
Ccdc88bQ4QRL3 Olfr1136-201ENSMUST00000077471 1067 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
Ccdc88bQ4QRL3 n-R5s205-201ENSMUST00000083149 125 ntBASIC5.07□□□□□ -1.6
Ccdc88bQ4QRL3 Olfr844-202ENSMUST00000220268 1686 ntAPPRIS P1 TSL 5 BASIC5.07□□□□□ -1.6
Ccdc88bQ4QRL3 Serpinb9e-201ENSMUST00000071873 1923 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
Ccdc88bQ4QRL3 AC115034.1-201ENSMUST00000215393 3846 ntBASIC5.07□□□□□ -1.6
Ccdc88bQ4QRL3 AC156632.1-201ENSMUST00000220626 3845 ntBASIC5.07□□□□□ -1.6
Ccdc88bQ4QRL3 Gm42684-201ENSMUST00000197663 3615 ntBASIC5.07□□□□□ -1.6
Ccdc88bQ4QRL3 Olfr1104-202ENSMUST00000214857 2693 ntAPPRIS P1 TSL 5 BASIC5.07□□□□□ -1.6
Retrieved 100 of 76,532 protein–RNA pairs in 75.9 ms