Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Gm19514-201ENSMUST00000206856 4489 ntBASIC6.21□□□□□ -1.42
Rnf40Q3U319 Bclaf1-202ENSMUST00000092678 5307 ntAPPRIS P3 TSL 1 (best) BASIC6.21□□□□□ -1.42
Rnf40Q3U319 4732496C06Rik-201ENSMUST00000206533 2500 ntBASIC6.21□□□□□ -1.42
Rnf40Q3U319 Mug-ps1-201ENSMUST00000186891 4386 ntBASIC6.21□□□□□ -1.42
Rnf40Q3U319 Gm37212-201ENSMUST00000192582 3650 ntBASIC6.21□□□□□ -1.42
Rnf40Q3U319 Ighv1-42-201ENSMUST00000103516 294 ntAPPRIS P1 BASIC6.21□□□□□ -1.42
Rnf40Q3U319 Ighv1-43-201ENSMUST00000103517 294 ntAPPRIS P1 BASIC6.21□□□□□ -1.42
Rnf40Q3U319 Traj46-201ENSMUST00000103696 63 ntAPPRIS P1 BASIC6.21□□□□□ -1.42
Rnf40Q3U319 Gm25938-201ENSMUST00000104139 166 ntBASIC6.21□□□□□ -1.42
Rnf40Q3U319 Gm14180-201ENSMUST00000105066 78 ntAPPRIS P1 BASIC6.21□□□□□ -1.42
Rnf40Q3U319 Gstm7-202ENSMUST00000106687 743 ntTSL 3 BASIC6.21□□□□□ -1.42
Rnf40Q3U319 Cyp2j14-ps-201ENSMUST00000117776 361 ntBASIC6.21□□□□□ -1.42
Rnf40Q3U319 Gm8692-201ENSMUST00000118102 438 ntBASIC6.21□□□□□ -1.42
Rnf40Q3U319 Gm15603-201ENSMUST00000119252 492 ntBASIC6.21□□□□□ -1.42
Rnf40Q3U319 Gm12399-201ENSMUST00000121475 446 ntBASIC6.21□□□□□ -1.42
Rnf40Q3U319 Gm2788-201ENSMUST00000129551 797 ntTSL 3 BASIC6.21□□□□□ -1.42
Rnf40Q3U319 Olfr406-201ENSMUST00000133561 1101 ntAPPRIS P1 BASIC6.21□□□□□ -1.42
Rnf40Q3U319 Gm22097-201ENSMUST00000157929 278 ntBASIC6.21□□□□□ -1.42
Rnf40Q3U319 Cst12-202ENSMUST00000168443 546 ntAPPRIS P2 TSL 1 (best) BASIC6.21□□□□□ -1.42
Rnf40Q3U319 Mir6921-201ENSMUST00000183719 80 ntBASIC6.21□□□□□ -1.42
Rnf40Q3U319 Gm28543-201ENSMUST00000188986 509 ntTSL 5 BASIC6.21□□□□□ -1.42
Rnf40Q3U319 Sprr2g-202ENSMUST00000189634 651 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
Rnf40Q3U319 Gm38131-201ENSMUST00000192449 430 ntBASIC6.21□□□□□ -1.42
Rnf40Q3U319 Gm37997-201ENSMUST00000193515 267 ntBASIC6.21□□□□□ -1.42
Rnf40Q3U319 Ighv1-29-201ENSMUST00000194116 342 ntBASIC6.21□□□□□ -1.42
Rnf40Q3U319 Gm42500-201ENSMUST00000199898 517 ntTSL 3 BASIC6.21□□□□□ -1.42
Rnf40Q3U319 Gm5318-201ENSMUST00000205249 406 ntBASIC6.21□□□□□ -1.42
Rnf40Q3U319 AC124184.1-201ENSMUST00000218167 283 ntBASIC6.21□□□□□ -1.42
Rnf40Q3U319 Gm32443-202ENSMUST00000220011 773 ntTSL 5 BASIC6.21□□□□□ -1.42
Rnf40Q3U319 Gm30624-201ENSMUST00000220039 628 ntTSL 3 BASIC6.21□□□□□ -1.42
Rnf40Q3U319 Gm4263-201ENSMUST00000220693 1101 ntBASIC6.21□□□□□ -1.42
Rnf40Q3U319 AC134254.2-201ENSMUST00000221262 170 ntBASIC6.21□□□□□ -1.42
Rnf40Q3U319 Sprr2g-201ENSMUST00000056590 650 ntAPPRIS P1 TSL 5 BASIC6.21□□□□□ -1.42
Rnf40Q3U319 Gm25133-201ENSMUST00000082647 130 ntBASIC6.21□□□□□ -1.42
Rnf40Q3U319 Gm24705-201ENSMUST00000082808 107 ntBASIC6.21□□□□□ -1.42
Rnf40Q3U319 n-R5s169-201ENSMUST00000083110 120 ntBASIC6.21□□□□□ -1.42
Rnf40Q3U319 Clca4b-201ENSMUST00000098549 2997 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
Rnf40Q3U319 Alkbh8-204ENSMUST00000211933 7674 ntAPPRIS P2 TSL 1 (best) BASIC6.21□□□□□ -1.42
Rnf40Q3U319 Ddx58-201ENSMUST00000037907 3874 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
Rnf40Q3U319 Tex47-203ENSMUST00000160634 2881 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
Rnf40Q3U319 Olfr985-202ENSMUST00000214981 1879 ntAPPRIS P1 TSL 3 BASIC6.21□□□□□ -1.42
Rnf40Q3U319 Olfr1261-204ENSMUST00000216953 3176 ntAPPRIS P1 TSL 5 BASIC6.21□□□□□ -1.42
Rnf40Q3U319 Gm14429-201ENSMUST00000121881 2024 ntBASIC6.21□□□□□ -1.42
Rnf40Q3U319 Zfp182-201ENSMUST00000040628 2487 ntAPPRIS P2 TSL 1 (best) BASIC6.21□□□□□ -1.42
Rnf40Q3U319 Gm5798-201ENSMUST00000164613 1751 ntAPPRIS P1 TSL 5 BASIC6.21□□□□□ -1.42
Rnf40Q3U319 Gm8104-201ENSMUST00000168165 1761 ntAPPRIS P1 TSL 5 BASIC6.21□□□□□ -1.42
Rnf40Q3U319 Gm8011-201ENSMUST00000172163 1751 ntAPPRIS P1 TSL 5 BASIC6.21□□□□□ -1.42
Rnf40Q3U319 Xpo1-203ENSMUST00000102870 3471 ntAPPRIS P1 TSL 5 BASIC6.2□□□□□ -1.42
Rnf40Q3U319 Gm10033-201ENSMUST00000072427 1813 ntBASIC6.2□□□□□ -1.42
Rnf40Q3U319 Olfr560-201ENSMUST00000210453 2168 ntAPPRIS P1 TSL 5 BASIC6.2□□□□□ -1.42
Rnf40Q3U319 Gm43361-201ENSMUST00000196562 4690 ntBASIC6.2□□□□□ -1.42
Rnf40Q3U319 Emsy-202ENSMUST00000205276 7693 ntAPPRIS P2 TSL 1 (best) BASIC6.2□□□□□ -1.42
Rnf40Q3U319 AC162908.1-201ENSMUST00000219164 4563 ntBASIC6.2□□□□□ -1.42
Rnf40Q3U319 Vmn1r67-202ENSMUST00000226237 2352 ntAPPRIS ALT2 BASIC6.2□□□□□ -1.42
Rnf40Q3U319 Gm24888-201ENSMUST00000104387 130 ntBASIC6.2□□□□□ -1.42
Rnf40Q3U319 Gm3020-201ENSMUST00000112801 450 ntTSL 5 BASIC6.2□□□□□ -1.42
Rnf40Q3U319 Gm15016-201ENSMUST00000117300 720 ntBASIC6.2□□□□□ -1.42
Rnf40Q3U319 Gm15037-201ENSMUST00000120358 259 ntBASIC6.2□□□□□ -1.42
Rnf40Q3U319 Gm11679-201ENSMUST00000121830 779 ntBASIC6.2□□□□□ -1.42
Rnf40Q3U319 Gm12929-201ENSMUST00000122406 370 ntBASIC6.2□□□□□ -1.42
Rnf40Q3U319 Gm12066-201ENSMUST00000123592 443 ntTSL 3 BASIC6.2□□□□□ -1.42
Rnf40Q3U319 Gm13793-201ENSMUST00000124214 438 ntTSL 2 BASIC6.2□□□□□ -1.42
Rnf40Q3U319 Gm10130-201ENSMUST00000133235 303 ntAPPRIS P1 TSL 5 BASIC6.2□□□□□ -1.42
Rnf40Q3U319 1600025M17Rik-201ENSMUST00000138262 666 ntTSL 5 BASIC6.2□□□□□ -1.42
Rnf40Q3U319 Med9os-202ENSMUST00000139794 446 ntTSL 3 BASIC6.2□□□□□ -1.42
Rnf40Q3U319 4930517O19Rik-201ENSMUST00000140320 603 ntTSL 5 BASIC6.2□□□□□ -1.42
Rnf40Q3U319 C230035I16Rik-201ENSMUST00000141543 623 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
Rnf40Q3U319 Gm25278-201ENSMUST00000157267 120 ntBASIC6.2□□□□□ -1.42
Rnf40Q3U319 Gm22728-201ENSMUST00000158087 129 ntBASIC6.2□□□□□ -1.42
Rnf40Q3U319 Gm17153-201ENSMUST00000171314 490 ntBASIC6.2□□□□□ -1.42
Rnf40Q3U319 Csnk2b-209ENSMUST00000174779 632 ntTSL 2 BASIC6.2□□□□□ -1.42
Rnf40Q3U319 Dnah7c-201ENSMUST00000178395 612 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
Rnf40Q3U319 Mir3473g-201ENSMUST00000183494 136 ntBASIC6.2□□□□□ -1.42
Rnf40Q3U319 Gtpbp4-ps4-201ENSMUST00000184813 258 ntBASIC6.2□□□□□ -1.42
Rnf40Q3U319 Gm29048-201ENSMUST00000185342 615 ntBASIC6.2□□□□□ -1.42
Rnf40Q3U319 Gm29403-201ENSMUST00000185491 615 ntBASIC6.2□□□□□ -1.42
Rnf40Q3U319 Gm28248-201ENSMUST00000186093 615 ntBASIC6.2□□□□□ -1.42
Rnf40Q3U319 Gm29633-202ENSMUST00000186217 615 ntBASIC6.2□□□□□ -1.42
Rnf40Q3U319 Gm28829-201ENSMUST00000186231 615 ntBASIC6.2□□□□□ -1.42
Rnf40Q3U319 Gm28261-201ENSMUST00000186417 615 ntBASIC6.2□□□□□ -1.42
Rnf40Q3U319 Gm28815-201ENSMUST00000186751 615 ntBASIC6.2□□□□□ -1.42
Rnf40Q3U319 Gm28608-201ENSMUST00000186860 615 ntBASIC6.2□□□□□ -1.42
Rnf40Q3U319 Gm28420-201ENSMUST00000187340 615 ntBASIC6.2□□□□□ -1.42
Rnf40Q3U319 Gm28106-201ENSMUST00000187640 615 ntBASIC6.2□□□□□ -1.42
Rnf40Q3U319 Gm28698-201ENSMUST00000187734 615 ntBASIC6.2□□□□□ -1.42
Rnf40Q3U319 Gm29224-201ENSMUST00000187965 615 ntBASIC6.2□□□□□ -1.42
Rnf40Q3U319 Gm29189-201ENSMUST00000188018 615 ntBASIC6.2□□□□□ -1.42
Rnf40Q3U319 Gm29476-201ENSMUST00000188397 615 ntBASIC6.2□□□□□ -1.42
Rnf40Q3U319 Gm29505-201ENSMUST00000188424 615 ntBASIC6.2□□□□□ -1.42
Rnf40Q3U319 Gm28125-201ENSMUST00000188470 615 ntBASIC6.2□□□□□ -1.42
Rnf40Q3U319 Gm29391-201ENSMUST00000188545 615 ntBASIC6.2□□□□□ -1.42
Rnf40Q3U319 Gm29280-201ENSMUST00000188571 615 ntBASIC6.2□□□□□ -1.42
Rnf40Q3U319 Gm28349-201ENSMUST00000188590 615 ntBASIC6.2□□□□□ -1.42
Rnf40Q3U319 Gm28213-201ENSMUST00000189183 615 ntBASIC6.2□□□□□ -1.42
Rnf40Q3U319 Gm29377-205ENSMUST00000189603 615 ntBASIC6.2□□□□□ -1.42
Rnf40Q3U319 Gm28327-201ENSMUST00000189638 615 ntBASIC6.2□□□□□ -1.42
Rnf40Q3U319 Gm28790-201ENSMUST00000189642 615 ntBASIC6.2□□□□□ -1.42
Rnf40Q3U319 Gm28907-201ENSMUST00000189700 615 ntBASIC6.2□□□□□ -1.42
Rnf40Q3U319 Gm29115-201ENSMUST00000189870 615 ntBASIC6.2□□□□□ -1.42
Rnf40Q3U319 Gm28366-201ENSMUST00000190147 615 ntBASIC6.2□□□□□ -1.42
Retrieved 100 of 76,532 protein–RNA pairs in 98.4 ms