Protein–RNA interactions for Protein: Q8R5L3

Vps39, Vam6/Vps39-like protein, mousemouse

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps39Q8R5L3 Snx15-201ENSMUST00000025702 1635 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Vps39Q8R5L3 Tgds-201ENSMUST00000022727 1682 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Vps39Q8R5L3 Atf7-209ENSMUST00000184485 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Vps39Q8R5L3 Synpo-201ENSMUST00000097566 5060 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
Vps39Q8R5L3 Mef2d-201ENSMUST00000001455 5401 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Vps39Q8R5L3 Ppm1b-202ENSMUST00000112304 3262 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
Vps39Q8R5L3 Otx2-204ENSMUST00000122009 1737 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Vps39Q8R5L3 Lat2-202ENSMUST00000077636 1717 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Vps39Q8R5L3 Gm42417-201ENSMUST00000191849 2256 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Vps39Q8R5L3 Large1-204ENSMUST00000212459 4746 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Vps39Q8R5L3 Fam126a-201ENSMUST00000030849 5659 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Vps39Q8R5L3 Ecel1-201ENSMUST00000027463 2695 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Vps39Q8R5L3 Gm12216-203ENSMUST00000121435 655 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
Vps39Q8R5L3 1110065P20Rik-203ENSMUST00000137769 659 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Vps39Q8R5L3 2310068J16Rik-201ENSMUST00000188271 1124 ntBASIC17.41■□□□□ 0.38
Vps39Q8R5L3 Tspan2-203ENSMUST00000196611 682 ntTSL 5 BASIC17.41■□□□□ 0.38
Vps39Q8R5L3 Exosc3-201ENSMUST00000030003 1077 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Vps39Q8R5L3 1700018M17Rik-201ENSMUST00000052502 456 ntBASIC17.41■□□□□ 0.38
Vps39Q8R5L3 E030030I06Rik-201ENSMUST00000069372 876 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Vps39Q8R5L3 Fam110a-204ENSMUST00000109865 1853 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
Vps39Q8R5L3 Gm21596-201ENSMUST00000178049 1316 ntBASIC17.41■□□□□ 0.38
Vps39Q8R5L3 Ece2-202ENSMUST00000122306 2495 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Vps39Q8R5L3 Pitpnm1-201ENSMUST00000049658 4206 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Vps39Q8R5L3 Papola-203ENSMUST00000163473 2544 ntTSL 5 BASIC17.41■□□□□ 0.38
Vps39Q8R5L3 2010016I18Rik-204ENSMUST00000190356 1562 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Vps39Q8R5L3 Pomp-201ENSMUST00000031654 1579 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Vps39Q8R5L3 Ankrd17-202ENSMUST00000081914 8057 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
Vps39Q8R5L3 Fcgrt-201ENSMUST00000003512 1770 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Vps39Q8R5L3 Il1rn-201ENSMUST00000114482 1986 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Vps39Q8R5L3 Sik3-204ENSMUST00000126865 6287 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Vps39Q8R5L3 Baz1a-205ENSMUST00000173433 5788 ntAPPRIS P2 TSL 5 BASIC17.4■□□□□ 0.38
Vps39Q8R5L3 Sept4-205ENSMUST00000107962 1678 ntAPPRIS ALT1 TSL 5 BASIC17.4■□□□□ 0.38
Vps39Q8R5L3 Tm2d3-202ENSMUST00000065574 1478 ntAPPRIS P4 TSL 1 (best) BASIC17.4■□□□□ 0.38
Vps39Q8R5L3 Mrpl52-201ENSMUST00000010550 418 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Vps39Q8R5L3 Sdr39u1-201ENSMUST00000111325 1255 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Vps39Q8R5L3 Stmn4-202ENSMUST00000118426 1281 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Vps39Q8R5L3 Gm12896-201ENSMUST00000118430 226 ntBASIC17.4■□□□□ 0.38
Vps39Q8R5L3 Jtb-202ENSMUST00000119304 878 ntTSL 3 BASIC17.4■□□□□ 0.38
Vps39Q8R5L3 Gm15375-201ENSMUST00000119510 849 ntBASIC17.4■□□□□ 0.38
Vps39Q8R5L3 Tpsb2-201ENSMUST00000069616 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Vps39Q8R5L3 Fbrsl1-206ENSMUST00000198834 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Vps39Q8R5L3 Gm16863-201ENSMUST00000181476 2431 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Vps39Q8R5L3 Zfp318-201ENSMUST00000113481 7850 ntAPPRIS P4 TSL 5 BASIC17.4■□□□□ 0.38
Vps39Q8R5L3 Mpig6b-201ENSMUST00000097337 2252 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Vps39Q8R5L3 Ddx19a-201ENSMUST00000040416 2547 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Vps39Q8R5L3 Auh-202ENSMUST00000110031 3235 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Vps39Q8R5L3 Smad3-201ENSMUST00000034973 5090 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Vps39Q8R5L3 Il17re-201ENSMUST00000053569 1898 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
Vps39Q8R5L3 Hps4-201ENSMUST00000035279 2836 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
Vps39Q8R5L3 A430057M04Rik-202ENSMUST00000170150 2176 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Vps39Q8R5L3 Gdpd5-201ENSMUST00000037528 4611 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Vps39Q8R5L3 9930012K11Rik-205ENSMUST00000153871 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Vps39Q8R5L3 Ppp1r36-201ENSMUST00000063977 1515 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
Vps39Q8R5L3 Speg-204ENSMUST00000113589 833 ntTSL 2 BASIC17.39■□□□□ 0.37
Vps39Q8R5L3 Gm13401-201ENSMUST00000117074 291 ntBASIC17.39■□□□□ 0.37
Vps39Q8R5L3 Dsg2-203ENSMUST00000121837 953 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Vps39Q8R5L3 Arl4aos-201ENSMUST00000135883 748 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Vps39Q8R5L3 Dusp15-201ENSMUST00000037715 715 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Vps39Q8R5L3 AC121598.2-201ENSMUST00000228376 2325 ntBASIC17.39■□□□□ 0.37
Vps39Q8R5L3 Plppr2-201ENSMUST00000046371 2626 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Vps39Q8R5L3 Rasl10b-204ENSMUST00000175848 3249 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Vps39Q8R5L3 Fam131b-201ENSMUST00000031891 4065 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Vps39Q8R5L3 Ecel1-204ENSMUST00000161002 3033 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Vps39Q8R5L3 Lrp3-201ENSMUST00000118444 3877 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
Vps39Q8R5L3 Ttpal-202ENSMUST00000109408 1999 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Vps39Q8R5L3 Ddx28-201ENSMUST00000058579 2262 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
Vps39Q8R5L3 Mmp11-201ENSMUST00000000924 2288 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Vps39Q8R5L3 Dus3l-201ENSMUST00000007747 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Vps39Q8R5L3 Bcat2-201ENSMUST00000033098 1772 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Vps39Q8R5L3 Rap2a-201ENSMUST00000062117 4191 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Vps39Q8R5L3 Ache-201ENSMUST00000024099 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Vps39Q8R5L3 Tcf7l2-203ENSMUST00000111646 2839 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Vps39Q8R5L3 Artn-202ENSMUST00000097913 1568 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Vps39Q8R5L3 Vkorc1-202ENSMUST00000119922 387 ntTSL 3 BASIC17.38■□□□□ 0.37
Vps39Q8R5L3 Rell2-204ENSMUST00000163591 1057 ntTSL 5 BASIC17.38■□□□□ 0.37
Vps39Q8R5L3 2610035F20Rik-202ENSMUST00000177306 1149 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Vps39Q8R5L3 Gm3331-201ENSMUST00000183423 1017 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Vps39Q8R5L3 Cmtm7-204ENSMUST00000216760 665 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Vps39Q8R5L3 5033430I15Rik-201ENSMUST00000038032 729 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Vps39Q8R5L3 Gm10065-201ENSMUST00000076238 345 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
Vps39Q8R5L3 Kmt5b-203ENSMUST00000113968 3216 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Vps39Q8R5L3 Gm10654-201ENSMUST00000098653 1633 ntBASIC17.38■□□□□ 0.37
Vps39Q8R5L3 Prdm6-201ENSMUST00000091900 2601 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Vps39Q8R5L3 Plppr5-202ENSMUST00000106473 4294 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Vps39Q8R5L3 Prmt9-202ENSMUST00000118622 2768 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
Vps39Q8R5L3 Ncoa1-201ENSMUST00000085814 7329 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Vps39Q8R5L3 Meis2-202ENSMUST00000074285 2844 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Vps39Q8R5L3 Brpf1-203ENSMUST00000113121 4603 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
Vps39Q8R5L3 Gas2-201ENSMUST00000051912 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Vps39Q8R5L3 Aida-206ENSMUST00000193625 1810 ntTSL 3 BASIC17.37■□□□□ 0.37
Vps39Q8R5L3 Stk3-201ENSMUST00000018476 2914 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Vps39Q8R5L3 Tdh-201ENSMUST00000022522 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Vps39Q8R5L3 Larp1b-206ENSMUST00000191872 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Vps39Q8R5L3 Mfsd10-202ENSMUST00000114329 1906 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Vps39Q8R5L3 Mmp28-201ENSMUST00000021020 2311 ntAPPRIS P4 TSL 1 (best) BASIC17.37■□□□□ 0.37
Vps39Q8R5L3 Trmo-202ENSMUST00000086563 1554 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
Vps39Q8R5L3 Nsmf-202ENSMUST00000074422 2824 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Vps39Q8R5L3 Cacna1h-205ENSMUST00000159610 8230 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Vps39Q8R5L3 Cacna1h-201ENSMUST00000078496 8220 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Vps39Q8R5L3 Rab34-209ENSMUST00000207728 567 ntTSL 2 BASIC17.37■□□□□ 0.37
Retrieved 100 of 76,532 protein–RNA pairs in 21.1 ms