Protein–RNA interactions for Protein: Q8C2E4

Ptcd1, Pentatricopeptide repeat-containing protein 1, mitochondrial, mousemouse

Known RBP Predictions only

Length 695 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ptcd1Q8C2E4 Mcu-202ENSMUST00000020312 2872 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
Ptcd1Q8C2E4 Hoxa10-201ENSMUST00000121043 1436 ntAPPRIS P1 TSL 2 BASIC21.36■■□□□ 1.01
Ptcd1Q8C2E4 Lyl1-201ENSMUST00000037165 1800 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Ptcd1Q8C2E4 Cyp4f16-201ENSMUST00000003416 2227 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Ptcd1Q8C2E4 Nus1-201ENSMUST00000023830 4605 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Ptcd1Q8C2E4 Lrig1-202ENSMUST00000101126 4951 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Ptcd1Q8C2E4 Dap3-201ENSMUST00000090938 4760 ntAPPRIS P2 TSL 1 (best) BASIC21.36■■□□□ 1.01
Ptcd1Q8C2E4 Pdia6-201ENSMUST00000057288 2175 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Ptcd1Q8C2E4 Tesk1-201ENSMUST00000060864 3947 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Ptcd1Q8C2E4 Cyp26c1-201ENSMUST00000073391 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Ptcd1Q8C2E4 Tle4-202ENSMUST00000167776 4545 ntAPPRIS ALT1 TSL 5 BASIC21.35■■□□□ 1.01
Ptcd1Q8C2E4 Agbl5-209ENSMUST00000201225 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
Ptcd1Q8C2E4 Krt77-201ENSMUST00000087996 2930 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Ptcd1Q8C2E4 Ispd-207ENSMUST00000223205 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
Ptcd1Q8C2E4 Prkcz-203ENSMUST00000105624 694 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Ptcd1Q8C2E4 Tmsb10-202ENSMUST00000114049 690 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Ptcd1Q8C2E4 Gm11950-201ENSMUST00000121615 838 ntBASIC21.35■■□□□ 1.01
Ptcd1Q8C2E4 Rbm4-203ENSMUST00000178615 1018 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Ptcd1Q8C2E4 4930505N22Rik-201ENSMUST00000181820 945 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Ptcd1Q8C2E4 Kcns1-201ENSMUST00000045196 2712 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Ptcd1Q8C2E4 Cyp2r1-201ENSMUST00000032908 1627 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Ptcd1Q8C2E4 Ankrd39-201ENSMUST00000001172 2109 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Ptcd1Q8C2E4 Taf4b-201ENSMUST00000169862 5149 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
Ptcd1Q8C2E4 Akain1-201ENSMUST00000169935 2296 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Ptcd1Q8C2E4 Mtch2-205ENSMUST00000136872 2596 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Ptcd1Q8C2E4 Grk6-206ENSMUST00000224995 2971 ntBASIC21.34■■□□□ 1.01
Ptcd1Q8C2E4 Rd3-201ENSMUST00000175680 1969 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Ptcd1Q8C2E4 Foxf1-201ENSMUST00000181504 2415 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Ptcd1Q8C2E4 Npb-202ENSMUST00000106194 530 ntAPPRIS ALT2 TSL 2 BASIC21.34■■□□□ 1.01
Ptcd1Q8C2E4 Npb-203ENSMUST00000106195 542 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
Ptcd1Q8C2E4 Srpx-202ENSMUST00000115543 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
Ptcd1Q8C2E4 Pabpc1l2b-ps-201ENSMUST00000124538 690 ntBASIC21.34■■□□□ 1.01
Ptcd1Q8C2E4 Flg-207ENSMUST00000180293 768 ntAPPRIS ALT2 BASIC21.34■■□□□ 1.01
Ptcd1Q8C2E4 2010010A06Rik-202ENSMUST00000186356 694 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Ptcd1Q8C2E4 Gm43514-201ENSMUST00000198852 424 ntBASIC21.34■■□□□ 1.01
Ptcd1Q8C2E4 Otx2os1-206ENSMUST00000228153 787 ntBASIC21.34■■□□□ 1.01
Ptcd1Q8C2E4 Camsap3-207ENSMUST00000207712 2539 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Ptcd1Q8C2E4 Krt27-201ENSMUST00000017732 1550 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Ptcd1Q8C2E4 Plac9a-201ENSMUST00000052286 1555 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Ptcd1Q8C2E4 Bmp6-201ENSMUST00000171970 3593 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Ptcd1Q8C2E4 Fndc4-202ENSMUST00000172435 2333 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Ptcd1Q8C2E4 Rab11b-203ENSMUST00000173860 1544 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Ptcd1Q8C2E4 Abcd4-210ENSMUST00000223107 2410 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Ptcd1Q8C2E4 Fam71e1-202ENSMUST00000205359 1307 ntAPPRIS ALT2 TSL 2 BASIC21.33■■□□□ 1.01
Ptcd1Q8C2E4 Fam166b-201ENSMUST00000052829 1349 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Ptcd1Q8C2E4 Hmga1-206ENSMUST00000119486 1003 ntAPPRIS P3 TSL 2 BASIC21.33■■□□□ 1.01
Ptcd1Q8C2E4 D330023K18Rik-201ENSMUST00000133550 920 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Ptcd1Q8C2E4 Gm25925-201ENSMUST00000158314 306 ntBASIC21.33■■□□□ 1.01
Ptcd1Q8C2E4 Dctn3-201ENSMUST00000030158 973 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Ptcd1Q8C2E4 Sox30-201ENSMUST00000049038 2997 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Ptcd1Q8C2E4 Exosc5-201ENSMUST00000079634 1020 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Ptcd1Q8C2E4 Lgmn-201ENSMUST00000021607 1990 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Ptcd1Q8C2E4 Grb14-201ENSMUST00000028252 1986 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Ptcd1Q8C2E4 Tmem47-203ENSMUST00000171953 1801 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Ptcd1Q8C2E4 Itsn2-201ENSMUST00000062580 5987 ntAPPRIS P2 TSL 5 BASIC21.33■■□□□ 1
Ptcd1Q8C2E4 Pard3-219ENSMUST00000162309 5659 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1
Ptcd1Q8C2E4 Trim47-202ENSMUST00000106441 2192 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1
Ptcd1Q8C2E4 Hoxb2-201ENSMUST00000100523 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Ptcd1Q8C2E4 Pgrmc1-201ENSMUST00000073339 1857 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Ptcd1Q8C2E4 Fam107a-202ENSMUST00000120411 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Ptcd1Q8C2E4 Dmrt2-201ENSMUST00000053068 2347 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Ptcd1Q8C2E4 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
Ptcd1Q8C2E4 B3gnt2-202ENSMUST00000062844 3057 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Ptcd1Q8C2E4 Tgfb1-201ENSMUST00000002678 2175 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Ptcd1Q8C2E4 Gm6443-201ENSMUST00000203599 874 ntBASIC21.32■■□□□ 1
Ptcd1Q8C2E4 Gm18115-201ENSMUST00000221209 621 ntBASIC21.32■■□□□ 1
Ptcd1Q8C2E4 Surf4-201ENSMUST00000015011 3281 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Ptcd1Q8C2E4 Noxa1-201ENSMUST00000044018 1617 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
Ptcd1Q8C2E4 Orai3-201ENSMUST00000061587 1996 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Ptcd1Q8C2E4 Tmem254b-201ENSMUST00000022418 1447 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Ptcd1Q8C2E4 2410002F23Rik-217ENSMUST00000188111 2131 ntAPPRIS P2 TSL 2 BASIC21.31■■□□□ 1
Ptcd1Q8C2E4 Arfrp1-209ENSMUST00000170190 2483 ntTSL 5 BASIC21.31■■□□□ 1
Ptcd1Q8C2E4 Mrpl15-203ENSMUST00000130201 1894 ntTSL 1 (best) BASIC21.31■■□□□ 1
Ptcd1Q8C2E4 Rtkn-203ENSMUST00000121093 2597 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
Ptcd1Q8C2E4 Surf1-201ENSMUST00000015934 1173 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Ptcd1Q8C2E4 Hrh3-204ENSMUST00000165248 1224 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
Ptcd1Q8C2E4 D830030K20Rik-204ENSMUST00000225885 1142 ntBASIC21.31■■□□□ 1
Ptcd1Q8C2E4 Ldlrad1-201ENSMUST00000094916 1093 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
Ptcd1Q8C2E4 Lancl2-201ENSMUST00000050077 2509 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Ptcd1Q8C2E4 Ttc19-201ENSMUST00000050646 3410 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
Ptcd1Q8C2E4 Hoxa1-202ENSMUST00000120363 2043 ntTSL 1 (best) BASIC21.31■■□□□ 1
Ptcd1Q8C2E4 Gls2-201ENSMUST00000044776 2573 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Ptcd1Q8C2E4 Lrrc27-202ENSMUST00000106104 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
Ptcd1Q8C2E4 Lrrc57-204ENSMUST00000102499 1961 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Ptcd1Q8C2E4 Mprip-203ENSMUST00000108751 4021 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
Ptcd1Q8C2E4 Kcns3-201ENSMUST00000055673 2933 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Ptcd1Q8C2E4 Sqor-201ENSMUST00000005953 1804 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Ptcd1Q8C2E4 Baz1a-201ENSMUST00000038926 6188 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
Ptcd1Q8C2E4 Gm14964-202ENSMUST00000149574 716 ntTSL 1 (best) BASIC21.3■■□□□ 1
Ptcd1Q8C2E4 Znhit2-201ENSMUST00000162726 1281 ntAPPRIS P1 BASIC21.3■■□□□ 1
Ptcd1Q8C2E4 Gm26661-201ENSMUST00000181025 471 ntAPPRIS P1 BASIC21.3■■□□□ 1
Ptcd1Q8C2E4 Hist1h2bc-201ENSMUST00000018246 1156 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Ptcd1Q8C2E4 Gm27357-201ENSMUST00000183754 135 ntBASIC21.3■■□□□ 1
Ptcd1Q8C2E4 Gm28626-201ENSMUST00000187004 520 ntTSL 2 BASIC21.3■■□□□ 1
Ptcd1Q8C2E4 Hist1h2ba-201ENSMUST00000052776 384 ntAPPRIS P1 BASIC21.3■■□□□ 1
Ptcd1Q8C2E4 Spr-ps1-201ENSMUST00000089584 605 ntBASIC21.3■■□□□ 1
Ptcd1Q8C2E4 Elmo2-204ENSMUST00000103088 3052 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
Ptcd1Q8C2E4 AU019823-202ENSMUST00000145139 2805 ntTSL 2 BASIC21.3■■□□□ 1
Ptcd1Q8C2E4 Nol4l-201ENSMUST00000035346 6399 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Ptcd1Q8C2E4 Glra1-203ENSMUST00000108853 1797 ntTSL 5 BASIC21.3■■□□□ 1
Retrieved 100 of 76,532 protein–RNA pairs in 21 ms