Protein–RNA interactions for Protein: Q6PE01

Snrnp40, U5 small nuclear ribonucleoprotein 40 kDa protein, mousemouse

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Snrnp40Q6PE01 Gm35154-202ENSMUST00000217008 1093 ntTSL 5 BASIC15.27■□□□□ 0.04
Snrnp40Q6PE01 Mrps18a-201ENSMUST00000024763 884 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Snrnp40Q6PE01 Dnajc2-201ENSMUST00000030771 2133 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Snrnp40Q6PE01 Lsm6-201ENSMUST00000051867 2107 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Snrnp40Q6PE01 Pou3f1-201ENSMUST00000053491 3849 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
Snrnp40Q6PE01 Rasd1-201ENSMUST00000062405 1611 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Snrnp40Q6PE01 Golph3-205ENSMUST00000228671 2842 ntBASIC15.27■□□□□ 0.03
Snrnp40Q6PE01 Nipsnap3b-201ENSMUST00000015391 1552 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Snrnp40Q6PE01 Chd5-202ENSMUST00000030775 9486 ntAPPRIS P3 TSL 5 BASIC15.27■□□□□ 0.03
Snrnp40Q6PE01 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
Snrnp40Q6PE01 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
Snrnp40Q6PE01 Gm37374-201ENSMUST00000194954 1829 ntBASIC15.27■□□□□ 0.03
Snrnp40Q6PE01 Acot2-201ENSMUST00000021649 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Snrnp40Q6PE01 Babam1-201ENSMUST00000002473 1433 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Snrnp40Q6PE01 Rpl3l-202ENSMUST00000170239 1375 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
Snrnp40Q6PE01 Gm14029-201ENSMUST00000151051 1348 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Snrnp40Q6PE01 Celf6-203ENSMUST00000118549 2973 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
Snrnp40Q6PE01 Rpap3-201ENSMUST00000023104 2260 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Snrnp40Q6PE01 Stx2-201ENSMUST00000031378 2939 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
Snrnp40Q6PE01 Tsacc-202ENSMUST00000107556 584 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Snrnp40Q6PE01 Faap20-210ENSMUST00000178473 1076 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
Snrnp40Q6PE01 Bex3-204ENSMUST00000178632 933 ntAPPRIS P3 TSL 2 BASIC15.26■□□□□ 0.03
Snrnp40Q6PE01 Gm26644-201ENSMUST00000181365 958 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Snrnp40Q6PE01 Ankrd23-204ENSMUST00000194853 1073 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Snrnp40Q6PE01 4933412L11Rik-201ENSMUST00000203702 1044 ntBASIC15.26■□□□□ 0.03
Snrnp40Q6PE01 Dlgap1-209ENSMUST00000140728 2173 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
Snrnp40Q6PE01 Pgam5-202ENSMUST00000112505 2098 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Snrnp40Q6PE01 Cxcl14-202ENSMUST00000224801 1467 ntBASIC15.26■□□□□ 0.03
Snrnp40Q6PE01 Lrrc43-203ENSMUST00000196809 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Snrnp40Q6PE01 2810474O19Rik-201ENSMUST00000046689 6066 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Snrnp40Q6PE01 Polr3d-201ENSMUST00000000793 2016 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Snrnp40Q6PE01 Gm5414-201ENSMUST00000062879 1659 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
Snrnp40Q6PE01 Vav2-201ENSMUST00000056176 5221 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Snrnp40Q6PE01 Proc-201ENSMUST00000171765 1566 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
Snrnp40Q6PE01 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Snrnp40Q6PE01 E2f7-205ENSMUST00000173634 827 ntTSL 2 BASIC15.25■□□□□ 0.03
Snrnp40Q6PE01 Gtf3c2-202ENSMUST00000200871 318 ntTSL 3 BASIC15.25■□□□□ 0.03
Snrnp40Q6PE01 Snrnp35-201ENSMUST00000031349 1115 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Snrnp40Q6PE01 Ppib-201ENSMUST00000034947 892 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Snrnp40Q6PE01 Yipf2-203ENSMUST00000180365 2014 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Snrnp40Q6PE01 Atp8b2-202ENSMUST00000107396 5705 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
Snrnp40Q6PE01 Grb14-201ENSMUST00000028252 1986 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Snrnp40Q6PE01 Tm9sf2-203ENSMUST00000171318 1494 ntTSL 5 BASIC15.25■□□□□ 0.03
Snrnp40Q6PE01 Tm6sf2-201ENSMUST00000049197 1418 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
Snrnp40Q6PE01 4930447C04Rik-201ENSMUST00000044000 2051 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Snrnp40Q6PE01 Ulk2-201ENSMUST00000004920 5743 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Snrnp40Q6PE01 Ahcyl1-201ENSMUST00000029490 3863 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Snrnp40Q6PE01 Coq5-201ENSMUST00000040421 2037 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Snrnp40Q6PE01 Nrxn2-204ENSMUST00000113461 5505 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
Snrnp40Q6PE01 Ankle2-202ENSMUST00000086674 5025 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
Snrnp40Q6PE01 U2af2-201ENSMUST00000005041 2183 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Snrnp40Q6PE01 Fam3c-205ENSMUST00000165576 2826 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Snrnp40Q6PE01 Atf4-201ENSMUST00000109605 1724 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Snrnp40Q6PE01 Prps1l3-201ENSMUST00000139049 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Snrnp40Q6PE01 Zdhhc6-209ENSMUST00000225495 1711 ntBASIC15.24■□□□□ 0.03
Snrnp40Q6PE01 Nnat-202ENSMUST00000109526 1213 ntAPPRIS P4 TSL 1 (best) BASIC15.24■□□□□ 0.03
Snrnp40Q6PE01 Cd82-204ENSMUST00000111257 1003 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
Snrnp40Q6PE01 Gm5864-201ENSMUST00000202263 970 ntBASIC15.24■□□□□ 0.03
Snrnp40Q6PE01 CAAA01066804.1-201ENSMUST00000217800 611 ntTSL 3 BASIC15.24■□□□□ 0.03
Snrnp40Q6PE01 Gm9857-201ENSMUST00000050914 393 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
Snrnp40Q6PE01 Gm13285-201ENSMUST00000179725 1462 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
Snrnp40Q6PE01 Cyb561-201ENSMUST00000019734 2741 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Snrnp40Q6PE01 Krt77-201ENSMUST00000087996 2930 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Snrnp40Q6PE01 Map3k9-201ENSMUST00000035987 4564 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Snrnp40Q6PE01 Smad2-205ENSMUST00000168423 2857 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
Snrnp40Q6PE01 Calb2-201ENSMUST00000003754 1431 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Snrnp40Q6PE01 Sart1-201ENSMUST00000044207 5091 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Snrnp40Q6PE01 2010016I18Rik-204ENSMUST00000190356 1562 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Snrnp40Q6PE01 Stam2-202ENSMUST00000127316 1928 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Snrnp40Q6PE01 Adgra2-202ENSMUST00000178514 5129 ntTSL 5 BASIC15.23■□□□□ 0.03
Snrnp40Q6PE01 Magi2-203ENSMUST00000115267 4478 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Snrnp40Q6PE01 Nsmf-206ENSMUST00000114388 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Snrnp40Q6PE01 2810408A11Rik-204ENSMUST00000108621 1455 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
Snrnp40Q6PE01 AC154855.1-201ENSMUST00000227353 1458 ntBASIC15.23■□□□□ 0.03
Snrnp40Q6PE01 Zdhhc14-201ENSMUST00000089185 3115 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Snrnp40Q6PE01 Tulp3-205ENSMUST00000157005 1053 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Snrnp40Q6PE01 Mpst-202ENSMUST00000167140 1279 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
Snrnp40Q6PE01 Ankrd40-201ENSMUST00000021227 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Snrnp40Q6PE01 Kat14-201ENSMUST00000028911 3801 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Snrnp40Q6PE01 Rragd-203ENSMUST00000098190 5008 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
Snrnp40Q6PE01 Klhdc1-201ENSMUST00000063445 2620 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Snrnp40Q6PE01 Galk2-202ENSMUST00000094604 1928 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Snrnp40Q6PE01 Lrrfip1-201ENSMUST00000068116 2050 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
Snrnp40Q6PE01 Agpat3-201ENSMUST00000001240 5980 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Snrnp40Q6PE01 Wnt10b-207ENSMUST00000228594 1510 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
Snrnp40Q6PE01 Tcf7l1-201ENSMUST00000069536 3042 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
Snrnp40Q6PE01 Supv3l1-201ENSMUST00000020273 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Snrnp40Q6PE01 Lhx6-208ENSMUST00000148852 1481 ntTSL 5 BASIC15.22■□□□□ 0.03
Snrnp40Q6PE01 Sephs1-202ENSMUST00000115019 2933 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Snrnp40Q6PE01 Pla2g2c-201ENSMUST00000030530 1618 ntAPPRIS P1 TSL 3 BASIC15.22■□□□□ 0.03
Snrnp40Q6PE01 Hs3st5-202ENSMUST00000167191 2408 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Snrnp40Q6PE01 Kxd1-202ENSMUST00000117580 696 ntTSL 5 BASIC15.22■□□□□ 0.03
Snrnp40Q6PE01 Gm15794-201ENSMUST00000120182 631 ntBASIC15.22■□□□□ 0.03
Snrnp40Q6PE01 Cldn19-201ENSMUST00000084309 924 ntAPPRIS P4 TSL 1 (best) BASIC15.22■□□□□ 0.03
Snrnp40Q6PE01 Ttc9-202ENSMUST00000218362 4754 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Snrnp40Q6PE01 Slbp-203ENSMUST00000101354 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Snrnp40Q6PE01 Serac1-201ENSMUST00000024570 2033 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
Snrnp40Q6PE01 Brsk2-201ENSMUST00000018971 4049 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Snrnp40Q6PE01 Adgrl1-207ENSMUST00000141158 8181 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Snrnp40Q6PE01 Ybx2-202ENSMUST00000108601 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 44.7 ms