Protein–RNA interactions for Protein: Q6IFX3

Krt40, Keratin, type I cytoskeletal 40, mousemouse

Predictions only

Length 439 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Krt40Q6IFX3 Spata2l-202ENSMUST00000166768 2707 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Krt40Q6IFX3 Kcns1-201ENSMUST00000045196 2712 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Krt40Q6IFX3 Glra1-203ENSMUST00000108853 1797 ntTSL 5 BASIC20.45■□□□□ 0.86
Krt40Q6IFX3 Echdc2-203ENSMUST00000116307 893 ntTSL 5 BASIC20.45■□□□□ 0.86
Krt40Q6IFX3 Gm34933-201ENSMUST00000203245 1067 ntTSL 5 BASIC20.45■□□□□ 0.86
Krt40Q6IFX3 Krtap1-5-201ENSMUST00000054532 1041 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
Krt40Q6IFX3 Trim45-202ENSMUST00000094048 1815 ntTSL 5 BASIC20.45■□□□□ 0.86
Krt40Q6IFX3 Magi2-203ENSMUST00000115267 4478 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Krt40Q6IFX3 Fam69a-201ENSMUST00000031198 2721 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Krt40Q6IFX3 Tmcc1-202ENSMUST00000088896 5838 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Krt40Q6IFX3 Best2-203ENSMUST00000209421 2212 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Krt40Q6IFX3 Kmt2b-202ENSMUST00000108154 8454 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Krt40Q6IFX3 AU019823-202ENSMUST00000145139 2805 ntTSL 2 BASIC20.45■□□□□ 0.86
Krt40Q6IFX3 Tm6sf2-202ENSMUST00000110160 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Krt40Q6IFX3 Gm20460-201ENSMUST00000168709 1572 ntTSL 5 BASIC20.44■□□□□ 0.86
Krt40Q6IFX3 Hmgb3-202ENSMUST00000072699 1571 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Krt40Q6IFX3 Mafg-202ENSMUST00000106180 732 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
Krt40Q6IFX3 Mafg-204ENSMUST00000106182 1104 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
Krt40Q6IFX3 Gm27389-201ENSMUST00000183622 195 ntBASIC20.44■□□□□ 0.86
Krt40Q6IFX3 Pfdn6-201ENSMUST00000025163 807 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Krt40Q6IFX3 Grk2-202ENSMUST00000088737 3376 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Krt40Q6IFX3 Fam98a-201ENSMUST00000112507 2817 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Krt40Q6IFX3 Zfp219-204ENSMUST00000226522 2804 ntAPPRIS P2 BASIC20.44■□□□□ 0.86
Krt40Q6IFX3 Cnn2-201ENSMUST00000004784 2460 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Krt40Q6IFX3 Tmem198-202ENSMUST00000113575 2185 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Krt40Q6IFX3 Cyp4f16-201ENSMUST00000003416 2227 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Krt40Q6IFX3 Gga2-201ENSMUST00000033160 4915 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Krt40Q6IFX3 Prmt2-202ENSMUST00000099571 2052 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
Krt40Q6IFX3 Asnsd1-202ENSMUST00000123519 983 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Krt40Q6IFX3 Zfp629-206ENSMUST00000132524 215 ntTSL 5 BASIC20.43■□□□□ 0.86
Krt40Q6IFX3 Gm17349-201ENSMUST00000163472 300 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
Krt40Q6IFX3 Gm6345-202ENSMUST00000180900 204 ntBASIC20.43■□□□□ 0.86
Krt40Q6IFX3 Qdpr-208ENSMUST00000197946 1206 ntTSL 5 BASIC20.43■□□□□ 0.86
Krt40Q6IFX3 Cdkn2c-201ENSMUST00000063531 1106 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Krt40Q6IFX3 Ly6h-202ENSMUST00000065417 985 ntAPPRIS ALT1 TSL 2 BASIC20.43■□□□□ 0.86
Krt40Q6IFX3 Olfr315-201ENSMUST00000081533 998 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
Krt40Q6IFX3 Sharpin-201ENSMUST00000023211 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Krt40Q6IFX3 Odf2-211ENSMUST00000113767 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Krt40Q6IFX3 Pigw-201ENSMUST00000067058 2675 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Krt40Q6IFX3 Ythdf1-201ENSMUST00000037299 3184 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Krt40Q6IFX3 Ctbp2-201ENSMUST00000033269 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Krt40Q6IFX3 Fzd5-202ENSMUST00000116133 2895 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Krt40Q6IFX3 Stam2-202ENSMUST00000127316 1928 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Krt40Q6IFX3 Wnt10b-207ENSMUST00000228594 1510 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
Krt40Q6IFX3 Ndufv3-201ENSMUST00000046288 1537 ntAPPRIS P4 TSL 1 (best) BASIC20.43■□□□□ 0.86
Krt40Q6IFX3 Gls2-201ENSMUST00000044776 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Krt40Q6IFX3 Gls-202ENSMUST00000114510 5596 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Krt40Q6IFX3 Gm13420-201ENSMUST00000129574 1091 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
Krt40Q6IFX3 Tppp3-201ENSMUST00000014990 1127 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Krt40Q6IFX3 Gas5-203ENSMUST00000159119 665 ntTSL 5 BASIC20.42■□□□□ 0.86
Krt40Q6IFX3 Krtcap3-201ENSMUST00000054829 904 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Krt40Q6IFX3 Ldlrad1-201ENSMUST00000094916 1093 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
Krt40Q6IFX3 Paox-202ENSMUST00000097967 1024 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Krt40Q6IFX3 Nr1h2-213ENSMUST00000167197 1944 ntAPPRIS P3 TSL 5 BASIC20.42■□□□□ 0.86
Krt40Q6IFX3 Pitx2-207ENSMUST00000174661 1942 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
Krt40Q6IFX3 Slc43a1-202ENSMUST00000111624 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Krt40Q6IFX3 9930012K11Rik-205ENSMUST00000153871 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Krt40Q6IFX3 9930012K11Rik-201ENSMUST00000058240 1986 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
Krt40Q6IFX3 Tmem62-201ENSMUST00000067582 2921 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Krt40Q6IFX3 4930503L19Rik-201ENSMUST00000067556 2291 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Krt40Q6IFX3 A730089K16Rik-201ENSMUST00000194526 2427 ntBASIC20.42■□□□□ 0.86
Krt40Q6IFX3 Shisa7-203ENSMUST00000119433 3481 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Krt40Q6IFX3 Mapre3-201ENSMUST00000031058 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Krt40Q6IFX3 Ccnd3-202ENSMUST00000171031 2113 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
Krt40Q6IFX3 Zdhhc6-207ENSMUST00000224897 2168 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
Krt40Q6IFX3 5031439G07Rik-201ENSMUST00000047144 6845 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Krt40Q6IFX3 Hist1h2bj-201ENSMUST00000110452 463 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
Krt40Q6IFX3 Hist1h2bp-202ENSMUST00000110473 621 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Krt40Q6IFX3 Lamtor5-201ENSMUST00000145735 881 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Krt40Q6IFX3 Hist1h2bm-201ENSMUST00000224651 524 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
Krt40Q6IFX3 Pdcd2-201ENSMUST00000054450 1120 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Krt40Q6IFX3 Lmo4-203ENSMUST00000121796 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Krt40Q6IFX3 Dleu2-208ENSMUST00000182768 1442 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Krt40Q6IFX3 AC154855.1-201ENSMUST00000227353 1458 ntBASIC20.41■□□□□ 0.86
Krt40Q6IFX3 Tm2d3-202ENSMUST00000065574 1478 ntAPPRIS P4 TSL 1 (best) BASIC20.41■□□□□ 0.86
Krt40Q6IFX3 Gm7609-201ENSMUST00000113402 1538 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Krt40Q6IFX3 Gm42939-201ENSMUST00000197514 2205 ntBASIC20.41■□□□□ 0.86
Krt40Q6IFX3 Zscan12-201ENSMUST00000053293 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Krt40Q6IFX3 Fam109a-201ENSMUST00000056654 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Krt40Q6IFX3 Bcl11b-203ENSMUST00000109891 2888 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
Krt40Q6IFX3 Slc22a23-201ENSMUST00000040336 6251 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Krt40Q6IFX3 Lrch2-201ENSMUST00000112819 4892 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
Krt40Q6IFX3 Spout1-201ENSMUST00000100220 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Krt40Q6IFX3 Gm21057-201ENSMUST00000206022 670 ntTSL 3 BASIC20.4■□□□□ 0.86
Krt40Q6IFX3 Sfrp2-201ENSMUST00000029625 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Krt40Q6IFX3 Grcc10-201ENSMUST00000004389 863 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Krt40Q6IFX3 Rxra-201ENSMUST00000077257 4905 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Krt40Q6IFX3 Mrpl43-201ENSMUST00000097715 1213 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Krt40Q6IFX3 Kcnt1-203ENSMUST00000114172 5219 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
Krt40Q6IFX3 Glmn-201ENSMUST00000078021 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Krt40Q6IFX3 Gm26697-201ENSMUST00000180898 1760 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
Krt40Q6IFX3 Mmd-202ENSMUST00000107887 1654 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
Krt40Q6IFX3 Actl10-201ENSMUST00000104928 1501 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
Krt40Q6IFX3 Actl10-202ENSMUST00000226583 1501 ntBASIC20.39■□□□□ 0.85
Krt40Q6IFX3 Cacul1-202ENSMUST00000111460 5561 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
Krt40Q6IFX3 Fmnl2-201ENSMUST00000049483 5461 ntTSL 5 BASIC20.39■□□□□ 0.85
Krt40Q6IFX3 Taf4b-201ENSMUST00000169862 5149 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
Krt40Q6IFX3 Ndufaf8-201ENSMUST00000106223 781 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Krt40Q6IFX3 Ppdpf-201ENSMUST00000016488 1160 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Krt40Q6IFX3 Gm3272-201ENSMUST00000181181 1229 ntBASIC20.39■□□□□ 0.85
Retrieved 100 of 76,532 protein–RNA pairs in 32.5 ms