Protein–RNA interactions for Protein: Q61164

Ctcf, Transcriptional repressor CTCF, mousemouse

Known RBP Predictions only

Length 736 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CtcfQ61164 Tsks-201ENSMUST00000080233 1806 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
CtcfQ61164 Lat2-202ENSMUST00000077636 1717 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CtcfQ61164 Prob1-203ENSMUST00000190196 4888 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
CtcfQ61164 Sar1a-201ENSMUST00000020285 2613 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CtcfQ61164 Tbx21-201ENSMUST00000001484 2488 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CtcfQ61164 Gm43859-201ENSMUST00000200075 1412 ntBASIC19.11■□□□□ 0.65
CtcfQ61164 A430078I02Rik-202ENSMUST00000154066 2233 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CtcfQ61164 Rmdn3-201ENSMUST00000094695 2249 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CtcfQ61164 Ppt2-204ENSMUST00000168391 1342 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
CtcfQ61164 Dnm2-204ENSMUST00000165766 3063 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CtcfQ61164 Tmem127-201ENSMUST00000035871 4811 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CtcfQ61164 Prcd-201ENSMUST00000106381 724 ntTSL 3 BASIC19.11■□□□□ 0.65
CtcfQ61164 Gm27405-201ENSMUST00000184201 112 ntBASIC19.11■□□□□ 0.65
CtcfQ61164 Gm44672-201ENSMUST00000206944 1098 ntBASIC19.11■□□□□ 0.65
CtcfQ61164 Gm40460-201ENSMUST00000211591 735 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
CtcfQ61164 Nfu1-201ENSMUST00000032060 948 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
CtcfQ61164 Cystm1-201ENSMUST00000050584 831 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
CtcfQ61164 Dtwd2-203ENSMUST00000163590 2857 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CtcfQ61164 Fbxl3-206ENSMUST00000145693 3352 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CtcfQ61164 A830073O21Rik-202ENSMUST00000205693 3096 ntBASIC19.11■□□□□ 0.65
CtcfQ61164 Rps6ka1-201ENSMUST00000003741 3085 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CtcfQ61164 Abcb10-201ENSMUST00000075578 4306 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CtcfQ61164 Bcor-206ENSMUST00000124033 6785 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
CtcfQ61164 Aaed1-202ENSMUST00000220895 2858 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CtcfQ61164 Gm16499-203ENSMUST00000204633 2177 ntBASIC19.1■□□□□ 0.65
CtcfQ61164 Hnrnpll-205ENSMUST00000184635 3009 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CtcfQ61164 Cmip-202ENSMUST00000166750 2408 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
CtcfQ61164 1700041G16Rik-202ENSMUST00000186344 1824 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CtcfQ61164 Zfand5-201ENSMUST00000025659 2834 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CtcfQ61164 Zdhhc12-202ENSMUST00000102865 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CtcfQ61164 Gm11627-202ENSMUST00000107081 818 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
CtcfQ61164 Gm45822-201ENSMUST00000212231 259 ntTSL 3 BASIC19.1■□□□□ 0.65
CtcfQ61164 Hebp1-201ENSMUST00000045855 1058 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CtcfQ61164 Olfr94-203ENSMUST00000222190 1611 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
CtcfQ61164 Iqgap2-201ENSMUST00000068603 5771 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CtcfQ61164 Dhx32-201ENSMUST00000033290 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CtcfQ61164 Espn-208ENSMUST00000105654 1566 ntTSL 5 BASIC19.1■□□□□ 0.65
CtcfQ61164 Ppp1r1b-201ENSMUST00000078694 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CtcfQ61164 Ing1-202ENSMUST00000209565 1971 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CtcfQ61164 Poglut1-201ENSMUST00000036210 2758 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CtcfQ61164 Fiz1-208ENSMUST00000208944 2306 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CtcfQ61164 Itgb1bp1-201ENSMUST00000076260 1874 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CtcfQ61164 Nploc4-201ENSMUST00000044271 4121 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CtcfQ61164 Lrrc43-202ENSMUST00000121444 2016 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
CtcfQ61164 Inpp4a-201ENSMUST00000027287 5691 ntAPPRIS P2 TSL 5 BASIC19.09■□□□□ 0.65
CtcfQ61164 Ikzf5-203ENSMUST00000128432 714 ntTSL 3 BASIC19.09■□□□□ 0.65
CtcfQ61164 Gm38285-201ENSMUST00000192928 922 ntBASIC19.09■□□□□ 0.65
CtcfQ61164 Gm44549-201ENSMUST00000208351 577 ntBASIC19.09■□□□□ 0.65
CtcfQ61164 Hsbp1-201ENSMUST00000034300 1208 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CtcfQ61164 Gapvd1-203ENSMUST00000113099 5758 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
CtcfQ61164 Dlgap4-212ENSMUST00000169464 4851 ntTSL 5 BASIC19.09■□□□□ 0.65
CtcfQ61164 Elk4-202ENSMUST00000086556 4433 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CtcfQ61164 AC108858.1-201ENSMUST00000228461 1498 ntBASIC19.09■□□□□ 0.65
CtcfQ61164 G3bp2-204ENSMUST00000169094 2716 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
CtcfQ61164 Gopc-202ENSMUST00000105475 4317 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
CtcfQ61164 Arhgap39-202ENSMUST00000077821 4494 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.65
CtcfQ61164 Mycl-201ENSMUST00000030407 3501 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
CtcfQ61164 Rab37-202ENSMUST00000067754 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
CtcfQ61164 Cyp2r1-201ENSMUST00000032908 1627 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
CtcfQ61164 Gm26524-201ENSMUST00000192339 390 ntBASIC19.08■□□□□ 0.64
CtcfQ61164 Gm37179-201ENSMUST00000194862 823 ntBASIC19.08■□□□□ 0.64
CtcfQ61164 Zfp125-203ENSMUST00000208744 928 ntTSL 5 BASIC19.08■□□□□ 0.64
CtcfQ61164 Naxe-201ENSMUST00000029708 908 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CtcfQ61164 Rtl8b-201ENSMUST00000088778 1232 ntAPPRIS P1 BASIC19.08■□□□□ 0.64
CtcfQ61164 Ypel1-202ENSMUST00000090199 631 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
CtcfQ61164 Nsmf-207ENSMUST00000116574 2863 ntTSL 5 BASIC19.08■□□□□ 0.64
CtcfQ61164 Sbf1-205ENSMUST00000144585 6165 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
CtcfQ61164 Lad1-201ENSMUST00000038760 2993 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CtcfQ61164 Cntln-201ENSMUST00000047023 5528 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.64
CtcfQ61164 Pgm3-202ENSMUST00000072585 1920 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
CtcfQ61164 Slc2a8-201ENSMUST00000028129 2108 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CtcfQ61164 Katnbl1-201ENSMUST00000028552 2886 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CtcfQ61164 Zfp943-202ENSMUST00000153985 1598 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CtcfQ61164 Igsf8-201ENSMUST00000039506 2278 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CtcfQ61164 Ctdsp2-202ENSMUST00000105256 4817 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CtcfQ61164 Tmem170-201ENSMUST00000034431 3878 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CtcfQ61164 Dhx32-203ENSMUST00000106139 2233 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CtcfQ61164 Gm26596-201ENSMUST00000180464 2655 ntBASIC19.07■□□□□ 0.64
CtcfQ61164 Cdca3-201ENSMUST00000024270 1976 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CtcfQ61164 Arl10-201ENSMUST00000026988 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CtcfQ61164 Zfp783-201ENSMUST00000095946 670 ntBASIC19.07■□□□□ 0.64
CtcfQ61164 Lrfn1-202ENSMUST00000108288 3060 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
CtcfQ61164 Dgkz-202ENSMUST00000099709 3512 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
CtcfQ61164 Sema6c-214ENSMUST00000202315 2843 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
CtcfQ61164 Actr3-201ENSMUST00000027579 2554 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
CtcfQ61164 Esrrb-201ENSMUST00000021680 2136 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
CtcfQ61164 Gm20628-201ENSMUST00000177363 3215 ntBASIC19.07■□□□□ 0.64
CtcfQ61164 Ankra2-203ENSMUST00000123924 2328 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CtcfQ61164 P2rx4-201ENSMUST00000031429 2702 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CtcfQ61164 Gm21974-201ENSMUST00000126662 2037 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
CtcfQ61164 Leprotl1-201ENSMUST00000033910 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CtcfQ61164 Nsfl1c-203ENSMUST00000103160 1369 ntTSL 5 BASIC19.06■□□□□ 0.64
CtcfQ61164 Snx11-202ENSMUST00000107661 2197 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CtcfQ61164 Zufsp-202ENSMUST00000218055 2180 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CtcfQ61164 Rnf26-208ENSMUST00000185479 2964 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CtcfQ61164 Tub-201ENSMUST00000033341 5997 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CtcfQ61164 Fam57b-201ENSMUST00000079423 2328 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CtcfQ61164 Gnb1-203ENSMUST00000165335 3143 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CtcfQ61164 Kcns2-201ENSMUST00000072868 5456 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CtcfQ61164 Tubgcp4-203ENSMUST00000110658 4250 ntAPPRIS ALT1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Retrieved 100 of 76,532 protein–RNA pairs in 216.1 ms