Protein–RNA interactions for Protein: Q5SPW0

Vps54, Vacuolar protein sorting-associated protein 54, mousemouse

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps54Q5SPW0 Tia1-203ENSMUST00000095754 1789 ntAPPRIS ALT1 TSL 5 BASIC20.86■□□□□ 0.93
Vps54Q5SPW0 Ddx41-201ENSMUST00000021956 2205 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Vps54Q5SPW0 Pacsin1-203ENSMUST00000114872 1647 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Vps54Q5SPW0 Pi4k2b-201ENSMUST00000031081 3139 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
Vps54Q5SPW0 Mpdu1-201ENSMUST00000018905 1321 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Vps54Q5SPW0 Peli2-201ENSMUST00000073150 5900 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Vps54Q5SPW0 Ablim1-204ENSMUST00000111524 1251 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Vps54Q5SPW0 4833413E03Rik-201ENSMUST00000013706 1091 ntTSL 5 BASIC20.85■□□□□ 0.93
Vps54Q5SPW0 Slc2a8-204ENSMUST00000153484 1168 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Vps54Q5SPW0 Gm27463-201ENSMUST00000183569 57 ntBASIC20.85■□□□□ 0.93
Vps54Q5SPW0 AC122465.1-201ENSMUST00000220813 1209 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Vps54Q5SPW0 Nudt8-202ENSMUST00000025802 787 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Vps54Q5SPW0 Prok1-201ENSMUST00000049852 813 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Vps54Q5SPW0 Lsm10-201ENSMUST00000055575 943 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Vps54Q5SPW0 Glmn-201ENSMUST00000078021 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Vps54Q5SPW0 Rnaseh2a-202ENSMUST00000109736 2981 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
Vps54Q5SPW0 Ttc39a-201ENSMUST00000064129 2356 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
Vps54Q5SPW0 Tsc22d1-201ENSMUST00000022587 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Vps54Q5SPW0 Sulf2-201ENSMUST00000088086 3927 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Vps54Q5SPW0 Rcn1-201ENSMUST00000006128 2720 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Vps54Q5SPW0 Usp13-202ENSMUST00000108228 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Vps54Q5SPW0 Sfrp2-201ENSMUST00000029625 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Vps54Q5SPW0 Cxcl14-201ENSMUST00000021970 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Vps54Q5SPW0 Pdcd5-202ENSMUST00000120714 767 ntTSL 3 BASIC20.84■□□□□ 0.93
Vps54Q5SPW0 AC158538.1-201ENSMUST00000225870 294 ntBASIC20.84■□□□□ 0.93
Vps54Q5SPW0 Mrpl21-202ENSMUST00000025745 1138 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
Vps54Q5SPW0 Mrps33-201ENSMUST00000031978 1107 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Vps54Q5SPW0 Cep83-201ENSMUST00000020212 3639 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Vps54Q5SPW0 Zdhhc6-207ENSMUST00000224897 2168 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
Vps54Q5SPW0 Snrnp48-201ENSMUST00000091641 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Vps54Q5SPW0 Usp21-202ENSMUST00000111305 2278 ntAPPRIS P2 TSL 5 BASIC20.84■□□□□ 0.93
Vps54Q5SPW0 Pacsin1-204ENSMUST00000114873 1857 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Vps54Q5SPW0 4930519A11Rik-201ENSMUST00000181381 1523 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Vps54Q5SPW0 Prss54-205ENSMUST00000213096 1501 ntAPPRIS P3 TSL 5 BASIC20.83■□□□□ 0.93
Vps54Q5SPW0 Ppp1r1b-204ENSMUST00000137634 1343 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Vps54Q5SPW0 Xrcc6-202ENSMUST00000100399 3296 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Vps54Q5SPW0 Klhl33-201ENSMUST00000164415 1602 ntTSL 5 BASIC20.83■□□□□ 0.93
Vps54Q5SPW0 Crct1-202ENSMUST00000107301 460 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
Vps54Q5SPW0 Gm37025-201ENSMUST00000195159 829 ntBASIC20.83■□□□□ 0.93
Vps54Q5SPW0 Prdx5-201ENSMUST00000025904 1262 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
Vps54Q5SPW0 Pdlim5-211ENSMUST00000198381 1555 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.92
Vps54Q5SPW0 Plac9a-201ENSMUST00000052286 1555 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Vps54Q5SPW0 2810425M01Rik-201ENSMUST00000180790 1850 ntTSL 5 BASIC20.83■□□□□ 0.92
Vps54Q5SPW0 Gm37811-201ENSMUST00000192416 2601 ntBASIC20.83■□□□□ 0.92
Vps54Q5SPW0 Snx14-205ENSMUST00000173011 2238 ntTSL 5 BASIC20.82■□□□□ 0.92
Vps54Q5SPW0 Gm29514-202ENSMUST00000186665 2214 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Vps54Q5SPW0 Lrriq4-203ENSMUST00000172350 1797 ntAPPRIS P3 TSL 5 BASIC20.82■□□□□ 0.92
Vps54Q5SPW0 Gm44832-201ENSMUST00000208849 2303 ntBASIC20.82■□□□□ 0.92
Vps54Q5SPW0 Nptxr-201ENSMUST00000023057 5004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
Vps54Q5SPW0 Gm9731-201ENSMUST00000209480 747 ntBASIC20.82■□□□□ 0.92
Vps54Q5SPW0 Atp23-201ENSMUST00000026504 903 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Vps54Q5SPW0 Psmd4-201ENSMUST00000071664 1276 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
Vps54Q5SPW0 Eif4enif1-203ENSMUST00000110049 3614 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Vps54Q5SPW0 Htr6-202ENSMUST00000105802 2341 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
Vps54Q5SPW0 Kmt5c-201ENSMUST00000098853 2189 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Vps54Q5SPW0 Fmnl2-203ENSMUST00000090952 5414 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
Vps54Q5SPW0 Itgb1bp1-201ENSMUST00000076260 1874 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Vps54Q5SPW0 D1Ertd622e-204ENSMUST00000153115 3495 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Vps54Q5SPW0 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Vps54Q5SPW0 Fam166b-201ENSMUST00000052829 1349 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Vps54Q5SPW0 Rragd-203ENSMUST00000098190 5008 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
Vps54Q5SPW0 Ubtf-206ENSMUST00000107123 2759 ntAPPRIS P3 TSL 5 BASIC20.81■□□□□ 0.92
Vps54Q5SPW0 Nkiras2-201ENSMUST00000017981 2097 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Vps54Q5SPW0 Mmp23-201ENSMUST00000030937 1434 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Vps54Q5SPW0 Cog2-201ENSMUST00000034460 2825 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Vps54Q5SPW0 Pdxdc1-203ENSMUST00000115803 1268 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
Vps54Q5SPW0 Izumo1r-204ENSMUST00000121116 726 ntTSL 2 BASIC20.81■□□□□ 0.92
Vps54Q5SPW0 Gm14114-201ENSMUST00000139345 287 ntTSL 3 BASIC20.81■□□□□ 0.92
Vps54Q5SPW0 Gm29994-201ENSMUST00000195495 1193 ntBASIC20.81■□□□□ 0.92
Vps54Q5SPW0 Fitm1-201ENSMUST00000022826 971 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Vps54Q5SPW0 Coa6-201ENSMUST00000059093 747 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Vps54Q5SPW0 Gm8994-201ENSMUST00000077886 1236 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
Vps54Q5SPW0 Myoz1-201ENSMUST00000090469 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Vps54Q5SPW0 Fgfr2-211ENSMUST00000120187 4311 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Vps54Q5SPW0 Pea15a-201ENSMUST00000013842 2501 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Vps54Q5SPW0 Ric3-202ENSMUST00000120876 1633 ntAPPRIS ALT1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Vps54Q5SPW0 Gm16861-201ENSMUST00000181498 1647 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Vps54Q5SPW0 Wnk2-202ENSMUST00000049265 6738 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
Vps54Q5SPW0 Krt15-201ENSMUST00000107411 1700 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Vps54Q5SPW0 Lhx6-208ENSMUST00000148852 1481 ntTSL 5 BASIC20.81■□□□□ 0.92
Vps54Q5SPW0 Fbrsl1-206ENSMUST00000198834 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Vps54Q5SPW0 Rasl10b-202ENSMUST00000108140 3156 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
Vps54Q5SPW0 Kdelr2-201ENSMUST00000110731 1829 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Vps54Q5SPW0 Rprd1b-207ENSMUST00000152452 1910 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Vps54Q5SPW0 Nol4l-201ENSMUST00000035346 6399 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Vps54Q5SPW0 Mapre3-201ENSMUST00000031058 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Vps54Q5SPW0 Tspan9-201ENSMUST00000032503 1405 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Vps54Q5SPW0 Slc30a5-205ENSMUST00000225922 2722 ntAPPRIS ALT2 BASIC20.8■□□□□ 0.92
Vps54Q5SPW0 Clcn2-202ENSMUST00000120099 2812 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
Vps54Q5SPW0 Dhx32-203ENSMUST00000106139 2233 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Vps54Q5SPW0 Rps5-202ENSMUST00000108539 794 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
Vps54Q5SPW0 Rhno1-202ENSMUST00000112151 1108 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Vps54Q5SPW0 Ptf1aos-201ENSMUST00000122978 916 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Vps54Q5SPW0 Gm17661-201ENSMUST00000170317 270 ntBASIC20.8■□□□□ 0.92
Vps54Q5SPW0 Mpc2-201ENSMUST00000027853 1025 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Vps54Q5SPW0 Matn4-204ENSMUST00000109359 2179 ntTSL 5 BASIC20.8■□□□□ 0.92
Vps54Q5SPW0 Acot1-201ENSMUST00000168120 2272 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Vps54Q5SPW0 Nrros-203ENSMUST00000115165 2389 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Vps54Q5SPW0 Donson-201ENSMUST00000023682 2360 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Vps54Q5SPW0 Pomp-201ENSMUST00000031654 1579 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Retrieved 100 of 76,532 protein–RNA pairs in 164.4 ms