Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Gas2-201ENSMUST00000051912 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Trim40Q3UWA4 Dancr-204ENSMUST00000132389 2347 ntBASIC16.33■□□□□ 0.2
Trim40Q3UWA4 Tsc22d2-203ENSMUST00000199164 4659 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Trim40Q3UWA4 Ryr2-203ENSMUST00000220597 4924 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Trim40Q3UWA4 S100a6-201ENSMUST00000001051 731 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Trim40Q3UWA4 Gm13790-201ENSMUST00000156209 473 ntTSL 3 BASIC16.33■□□□□ 0.2
Trim40Q3UWA4 AC122828.1-201ENSMUST00000220785 489 ntTSL 3 BASIC16.33■□□□□ 0.2
Trim40Q3UWA4 Bri3-201ENSMUST00000056578 955 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Trim40Q3UWA4 E130116L18Rik-201ENSMUST00000066954 306 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
Trim40Q3UWA4 Hsd17b2-201ENSMUST00000034304 1320 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Trim40Q3UWA4 Fam219b-202ENSMUST00000114200 3017 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Trim40Q3UWA4 C130073E24Rik-201ENSMUST00000210222 6144 ntTSL 5 BASIC16.33■□□□□ 0.2
Trim40Q3UWA4 Efna4-201ENSMUST00000029674 1599 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Trim40Q3UWA4 Tmem125-201ENSMUST00000060214 1864 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
Trim40Q3UWA4 Lhfp-203ENSMUST00000147139 1932 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
Trim40Q3UWA4 Mid1ip1-201ENSMUST00000008179 2019 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Trim40Q3UWA4 Mmp14-201ENSMUST00000089688 2596 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Trim40Q3UWA4 Cep104-201ENSMUST00000047497 5151 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trim40Q3UWA4 Mettl21a-201ENSMUST00000053469 2666 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trim40Q3UWA4 Col11a2-202ENSMUST00000114252 5620 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
Trim40Q3UWA4 Sept8-203ENSMUST00000120878 1806 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
Trim40Q3UWA4 Gm12063-201ENSMUST00000148087 715 ntTSL 2 BASIC16.32■□□□□ 0.2
Trim40Q3UWA4 Ypel3-210ENSMUST00000170882 1050 ntAPPRIS P1 TSL 3 BASIC16.32■□□□□ 0.2
Trim40Q3UWA4 2700046G09Rik-201ENSMUST00000181612 1641 ntTSL 2 BASIC16.32■□□□□ 0.2
Trim40Q3UWA4 P2ry1-203ENSMUST00000193943 2203 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
Trim40Q3UWA4 Rnaseh1-201ENSMUST00000020959 1455 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trim40Q3UWA4 Rab35-201ENSMUST00000031492 2820 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trim40Q3UWA4 Gas6-201ENSMUST00000033828 2548 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trim40Q3UWA4 Farsa-201ENSMUST00000003906 1826 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trim40Q3UWA4 Olfr94-201ENSMUST00000055324 1304 ntAPPRIS P2 BASIC16.32■□□□□ 0.2
Trim40Q3UWA4 Dtd2-202ENSMUST00000085404 1012 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Trim40Q3UWA4 Pole4-201ENSMUST00000095786 1769 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trim40Q3UWA4 Cdh24-201ENSMUST00000067784 3489 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
Trim40Q3UWA4 Rab6a-202ENSMUST00000098252 3110 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trim40Q3UWA4 Mipep-201ENSMUST00000063562 3015 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trim40Q3UWA4 Zfp367-202ENSMUST00000117241 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trim40Q3UWA4 A130014A01Rik-201ENSMUST00000183021 2323 ntBASIC16.31■□□□□ 0.2
Trim40Q3UWA4 Acap3-201ENSMUST00000079031 4301 ntTSL 5 BASIC16.31■□□□□ 0.2
Trim40Q3UWA4 Ccdc59-201ENSMUST00000020049 1813 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim40Q3UWA4 Oxct2b-201ENSMUST00000102648 1735 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
Trim40Q3UWA4 Fmnl2-202ENSMUST00000050719 3380 ntTSL 5 BASIC16.31■□□□□ 0.2
Trim40Q3UWA4 Rchy1-204ENSMUST00000169948 1417 ntTSL 3 BASIC16.31■□□□□ 0.2
Trim40Q3UWA4 Reep4-203ENSMUST00000226563 1444 ntBASIC16.31■□□□□ 0.2
Trim40Q3UWA4 H2-Q7-201ENSMUST00000071951 1406 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim40Q3UWA4 H2-Q7-203ENSMUST00000078205 1419 ntTSL 5 BASIC16.31■□□□□ 0.2
Trim40Q3UWA4 Pde8b-208ENSMUST00000162292 4235 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim40Q3UWA4 Whrn-207ENSMUST00000107393 4028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim40Q3UWA4 Whrn-203ENSMUST00000084510 4049 ntAPPRIS P4 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim40Q3UWA4 Gm13216-201ENSMUST00000117145 591 ntBASIC16.31■□□□□ 0.2
Trim40Q3UWA4 Gm13146-201ENSMUST00000118508 780 ntBASIC16.31■□□□□ 0.2
Trim40Q3UWA4 Far2os2-201ENSMUST00000149815 980 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Trim40Q3UWA4 Vax2os-202ENSMUST00000150233 595 ntTSL 3 BASIC16.31■□□□□ 0.2
Trim40Q3UWA4 Prr14-201ENSMUST00000033095 2402 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim40Q3UWA4 Ankrd17-202ENSMUST00000081914 8057 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
Trim40Q3UWA4 Lrch4-204ENSMUST00000176667 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim40Q3UWA4 Nup85-201ENSMUST00000021085 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim40Q3UWA4 Ormdl3-201ENSMUST00000052919 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim40Q3UWA4 Chic2-201ENSMUST00000075452 9699 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim40Q3UWA4 Cdipt-201ENSMUST00000032920 1974 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim40Q3UWA4 Nhs-201ENSMUST00000081569 4881 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim40Q3UWA4 Simc1-202ENSMUST00000121401 4819 ntAPPRIS P2 TSL 5 BASIC16.31■□□□□ 0.2
Trim40Q3UWA4 Hace1-201ENSMUST00000037044 3785 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim40Q3UWA4 Xpo6-213ENSMUST00000168189 4552 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim40Q3UWA4 Acaa1a-201ENSMUST00000039784 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trim40Q3UWA4 Sphk1-202ENSMUST00000063446 2527 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
Trim40Q3UWA4 Wnt1-201ENSMUST00000023734 2378 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim40Q3UWA4 Abcd4-201ENSMUST00000021666 2309 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim40Q3UWA4 Cask-201ENSMUST00000033321 4057 ntTSL 5 BASIC16.3■□□□□ 0.2
Trim40Q3UWA4 Lrig3-201ENSMUST00000074807 4016 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim40Q3UWA4 Kctd17-206ENSMUST00000162517 901 ntAPPRIS P4 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim40Q3UWA4 Kctd17-209ENSMUST00000166142 826 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim40Q3UWA4 P4hb-203ENSMUST00000168360 770 ntTSL 3 BASIC16.3■□□□□ 0.2
Trim40Q3UWA4 Slc44a1-201ENSMUST00000102911 3102 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Trim40Q3UWA4 Sapcd2-202ENSMUST00000100323 1761 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
Trim40Q3UWA4 Ndel1-203ENSMUST00000108672 1653 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Trim40Q3UWA4 Tmem196-201ENSMUST00000058644 1678 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
Trim40Q3UWA4 Zfyve19-201ENSMUST00000090174 2008 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim40Q3UWA4 Dtx2-203ENSMUST00000111144 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim40Q3UWA4 Epha10-201ENSMUST00000059343 2544 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim40Q3UWA4 Clic1-201ENSMUST00000007257 1466 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim40Q3UWA4 Cdh2-201ENSMUST00000025166 4843 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim40Q3UWA4 Plbd2-201ENSMUST00000031597 4208 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim40Q3UWA4 Ccnyl1-202ENSMUST00000114077 3281 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Trim40Q3UWA4 H2afx-201ENSMUST00000052686 1384 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
Trim40Q3UWA4 Shq1-202ENSMUST00000113312 6816 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim40Q3UWA4 Ccdc85b-201ENSMUST00000179549 609 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
Trim40Q3UWA4 Zfp324-204ENSMUST00000210619 447 ntTSL 3 BASIC16.29■□□□□ 0.2
Trim40Q3UWA4 Nol7-205ENSMUST00000222499 756 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim40Q3UWA4 Nenf-201ENSMUST00000046770 742 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim40Q3UWA4 Chka-202ENSMUST00000072055 2549 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim40Q3UWA4 Ano8-204ENSMUST00000213382 3785 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
Trim40Q3UWA4 Efcab11-201ENSMUST00000046485 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim40Q3UWA4 Slc29a1-202ENSMUST00000064889 1988 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim40Q3UWA4 Pomp-201ENSMUST00000031654 1579 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim40Q3UWA4 Col4a3bp-203ENSMUST00000179226 3040 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Trim40Q3UWA4 Umad1-202ENSMUST00000159335 2615 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trim40Q3UWA4 Cadps2-201ENSMUST00000018122 4723 ntAPPRIS P3 TSL 5 BASIC16.28■□□□□ 0.2
Trim40Q3UWA4 Gm16754-201ENSMUST00000181222 2077 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Trim40Q3UWA4 Cdk5-201ENSMUST00000030814 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trim40Q3UWA4 Prdm11-201ENSMUST00000111272 3012 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 32.2 ms