Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Syt3-203ENSMUST00000120262 2096 ntAPPRIS P1 TSL 5 BASIC22.08■■□□□ 1.13
Ddb1Q3U1J4 Galk2-202ENSMUST00000094604 1928 ntAPPRIS ALT2 TSL 1 (best) BASIC22.08■■□□□ 1.13
Ddb1Q3U1J4 Park7-203ENSMUST00000105674 937 ntAPPRIS P1 TSL 5 BASIC22.08■■□□□ 1.13
Ddb1Q3U1J4 Gm128-202ENSMUST00000107197 1289 ntTSL 2 BASIC22.08■■□□□ 1.13
Ddb1Q3U1J4 Gm11336-201ENSMUST00000118168 334 ntBASIC22.08■■□□□ 1.13
Ddb1Q3U1J4 Cox6c-205ENSMUST00000156915 606 ntAPPRIS P1 TSL 5 BASIC22.08■■□□□ 1.13
Ddb1Q3U1J4 Gm38119-201ENSMUST00000192027 755 ntAPPRIS P1 TSL 5 BASIC22.08■■□□□ 1.13
Ddb1Q3U1J4 Gal3st1-201ENSMUST00000063004 1879 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
Ddb1Q3U1J4 Dvl3-203ENSMUST00000171572 2493 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
Ddb1Q3U1J4 Rilp-201ENSMUST00000042972 1489 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
Ddb1Q3U1J4 Aida-206ENSMUST00000193625 1810 ntTSL 3 BASIC22.08■■□□□ 1.12
Ddb1Q3U1J4 Phc2-202ENSMUST00000106079 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC22.08■■□□□ 1.12
Ddb1Q3U1J4 B3gnt9-201ENSMUST00000093217 2325 ntAPPRIS P1 TSL 2 BASIC22.07■■□□□ 1.12
Ddb1Q3U1J4 Grb14-201ENSMUST00000028252 1986 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
Ddb1Q3U1J4 Gm7935-201ENSMUST00000100555 1278 ntBASIC22.07■■□□□ 1.12
Ddb1Q3U1J4 Klk12-202ENSMUST00000107970 1115 ntAPPRIS P1 TSL 5 BASIC22.07■■□□□ 1.12
Ddb1Q3U1J4 Naa10-204ENSMUST00000114389 1031 ntAPPRIS ALT2 TSL 1 (best) BASIC22.07■■□□□ 1.12
Ddb1Q3U1J4 Sytl3-204ENSMUST00000159880 1296 ntTSL 5 BASIC22.07■■□□□ 1.12
Ddb1Q3U1J4 Gm29629-201ENSMUST00000187926 386 ntTSL 3 BASIC22.07■■□□□ 1.12
Ddb1Q3U1J4 Gm42802-201ENSMUST00000202475 456 ntTSL 2 BASIC22.07■■□□□ 1.12
Ddb1Q3U1J4 AC153556.1-201ENSMUST00000215135 794 ntTSL 5 BASIC22.07■■□□□ 1.12
Ddb1Q3U1J4 Elf2-212ENSMUST00000194641 5919 ntAPPRIS P3 TSL 5 BASIC22.07■■□□□ 1.12
Ddb1Q3U1J4 Gm37374-201ENSMUST00000194954 1829 ntBASIC22.07■■□□□ 1.12
Ddb1Q3U1J4 Srsf1-201ENSMUST00000079866 2948 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
Ddb1Q3U1J4 Sec24b-201ENSMUST00000001079 5128 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
Ddb1Q3U1J4 Arl11-201ENSMUST00000055159 1482 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
Ddb1Q3U1J4 Ltbp3-201ENSMUST00000081496 5190 ntAPPRIS P1 TSL 5 BASIC22.07■■□□□ 1.12
Ddb1Q3U1J4 Zc3h15-201ENSMUST00000081591 2111 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Ddb1Q3U1J4 Dohh-202ENSMUST00000121047 946 ntTSL 2 BASIC22.06■■□□□ 1.12
Ddb1Q3U1J4 Timm23-201ENSMUST00000013845 1173 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Ddb1Q3U1J4 Fbxo6-208ENSMUST00000168503 1240 ntAPPRIS P1 TSL 2 BASIC22.06■■□□□ 1.12
Ddb1Q3U1J4 9530052E02Rik-201ENSMUST00000180750 949 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
Ddb1Q3U1J4 AC125350.1-201ENSMUST00000225115 903 ntBASIC22.06■■□□□ 1.12
Ddb1Q3U1J4 Rhoc-201ENSMUST00000002303 1202 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Ddb1Q3U1J4 Hist1h1a-201ENSMUST00000055770 741 ntAPPRIS P1 BASIC22.06■■□□□ 1.12
Ddb1Q3U1J4 Stim2-201ENSMUST00000117661 4934 ntAPPRIS P2 TSL 1 (best) BASIC22.06■■□□□ 1.12
Ddb1Q3U1J4 4930426D05Rik-202ENSMUST00000139804 1650 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
Ddb1Q3U1J4 Lrch2-201ENSMUST00000112819 4892 ntAPPRIS P1 TSL 5 BASIC22.06■■□□□ 1.12
Ddb1Q3U1J4 4933402J07Rik-201ENSMUST00000093342 1304 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Ddb1Q3U1J4 Dvl1-201ENSMUST00000030948 3358 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
Ddb1Q3U1J4 Prmt2-202ENSMUST00000099571 2052 ntAPPRIS P3 TSL 1 (best) BASIC22.05■■□□□ 1.12
Ddb1Q3U1J4 Strn3-201ENSMUST00000013130 3046 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
Ddb1Q3U1J4 Dok5-201ENSMUST00000029075 1768 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
Ddb1Q3U1J4 Gm27002-201ENSMUST00000182789 620 ntTSL 2 BASIC22.05■■□□□ 1.12
Ddb1Q3U1J4 Tssc4-208ENSMUST00000208779 647 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
Ddb1Q3U1J4 Gm19935-201ENSMUST00000209208 979 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
Ddb1Q3U1J4 AC161829.1-201ENSMUST00000220298 281 ntBASIC22.05■■□□□ 1.12
Ddb1Q3U1J4 Rps4l-201ENSMUST00000071745 943 ntBASIC22.05■■□□□ 1.12
Ddb1Q3U1J4 Nr1h2-204ENSMUST00000107912 1839 ntAPPRIS P3 TSL 1 (best) BASIC22.05■■□□□ 1.12
Ddb1Q3U1J4 Abcg5-202ENSMUST00000163375 1613 ntTSL 5 BASIC22.05■■□□□ 1.12
Ddb1Q3U1J4 Shc3-201ENSMUST00000021898 1537 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
Ddb1Q3U1J4 Spata18-202ENSMUST00000071077 1978 ntAPPRIS P2 TSL 5 BASIC22.05■■□□□ 1.12
Ddb1Q3U1J4 Cd248-201ENSMUST00000070630 2560 ntAPPRIS P1 BASIC22.04■■□□□ 1.12
Ddb1Q3U1J4 Smap1-201ENSMUST00000027339 2289 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Ddb1Q3U1J4 Erich2-201ENSMUST00000100041 1749 ntAPPRIS P2 TSL 1 (best) BASIC22.04■■□□□ 1.12
Ddb1Q3U1J4 Naa60-212ENSMUST00000186375 2424 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Ddb1Q3U1J4 Tmem254c-202ENSMUST00000100819 1211 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Ddb1Q3U1J4 Crct1-202ENSMUST00000107301 460 ntAPPRIS P1 TSL 2 BASIC22.04■■□□□ 1.12
Ddb1Q3U1J4 Scube1-202ENSMUST00000043634 5161 ntAPPRIS ALT2 TSL 1 (best) BASIC22.04■■□□□ 1.12
Ddb1Q3U1J4 B3gnt4-201ENSMUST00000031384 1423 ntAPPRIS P1 BASIC22.04■■□□□ 1.12
Ddb1Q3U1J4 Mchr1-201ENSMUST00000166855 2188 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Ddb1Q3U1J4 Ubxn11-202ENSMUST00000074690 1573 ntAPPRIS P2 TSL 1 (best) BASIC22.04■■□□□ 1.12
Ddb1Q3U1J4 Cenpb-201ENSMUST00000089510 4886 ntAPPRIS P1 BASIC22.03■■□□□ 1.12
Ddb1Q3U1J4 Cnnm4-201ENSMUST00000153128 4547 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Ddb1Q3U1J4 Sox10-201ENSMUST00000040019 2713 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Ddb1Q3U1J4 Phf14-201ENSMUST00000090632 3985 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
Ddb1Q3U1J4 Cdk10-201ENSMUST00000036880 1642 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Ddb1Q3U1J4 Dnajc24-201ENSMUST00000102555 1197 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Ddb1Q3U1J4 Tsen15-201ENSMUST00000015124 1133 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Ddb1Q3U1J4 1700001G17Rik-201ENSMUST00000191779 889 ntBASIC22.03■■□□□ 1.12
Ddb1Q3U1J4 Hs3st2-202ENSMUST00000206880 1149 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
Ddb1Q3U1J4 Prm2-201ENSMUST00000037996 621 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Ddb1Q3U1J4 Gm26885-201ENSMUST00000181920 1688 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
Ddb1Q3U1J4 Spout1-201ENSMUST00000100220 1805 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Ddb1Q3U1J4 Golph3-205ENSMUST00000228671 2842 ntBASIC22.02■■□□□ 1.12
Ddb1Q3U1J4 Isyna1-204ENSMUST00000210005 1914 ntAPPRIS P1 TSL 5 BASIC22.02■■□□□ 1.12
Ddb1Q3U1J4 Tesmin-201ENSMUST00000025840 2234 ntAPPRIS P3 TSL 1 (best) BASIC22.02■■□□□ 1.12
Ddb1Q3U1J4 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
Ddb1Q3U1J4 Notumos-201ENSMUST00000151998 2659 ntBASIC22.02■■□□□ 1.12
Ddb1Q3U1J4 Gm3468-201ENSMUST00000165193 1955 ntAPPRIS P1 TSL 5 BASIC22.02■■□□□ 1.12
Ddb1Q3U1J4 Gm2956-201ENSMUST00000177786 1955 ntAPPRIS P1 TSL 5 BASIC22.02■■□□□ 1.12
Ddb1Q3U1J4 Gm12644-201ENSMUST00000119935 606 ntBASIC22.02■■□□□ 1.12
Ddb1Q3U1J4 Rps27l-203ENSMUST00000127896 575 ntTSL 5 BASIC22.02■■□□□ 1.12
Ddb1Q3U1J4 Cd300c-201ENSMUST00000061637 690 ntAPPRIS ALT2 TSL 5 BASIC22.02■■□□□ 1.12
Ddb1Q3U1J4 Hist1h2ai-201ENSMUST00000070124 393 ntAPPRIS P1 BASIC22.02■■□□□ 1.12
Ddb1Q3U1J4 Hist1h2an-201ENSMUST00000091751 393 ntAPPRIS P1 BASIC22.02■■□□□ 1.12
Ddb1Q3U1J4 Cd300c-202ENSMUST00000092466 700 ntAPPRIS P5 TSL 5 BASIC22.02■■□□□ 1.12
Ddb1Q3U1J4 Gm5145-201ENSMUST00000095633 837 ntAPPRIS P1 BASIC22.02■■□□□ 1.12
Ddb1Q3U1J4 Rhog-201ENSMUST00000098230 1269 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
Ddb1Q3U1J4 Gpr137-201ENSMUST00000025909 1717 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
Ddb1Q3U1J4 Gm27029-202ENSMUST00000107259 1855 ntAPPRIS P5 TSL 5 BASIC22.02■■□□□ 1.12
Ddb1Q3U1J4 Htra3-201ENSMUST00000087629 2750 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
Ddb1Q3U1J4 Coq5-201ENSMUST00000040421 2037 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
Ddb1Q3U1J4 Iars2-203ENSMUST00000110975 2801 ntTSL 5 BASIC22.01■■□□□ 1.11
Ddb1Q3U1J4 Sh3glb1-205ENSMUST00000199854 1416 ntTSL 5 BASIC22.01■■□□□ 1.11
Ddb1Q3U1J4 Rpsa-ps1-201ENSMUST00000191040 886 ntBASIC22.01■■□□□ 1.11
Ddb1Q3U1J4 Lat-206ENSMUST00000206793 1215 ntAPPRIS ALT2 TSL 5 BASIC22.01■■□□□ 1.11
Ddb1Q3U1J4 Vti1a-206ENSMUST00000225529 1244 ntBASIC22.01■■□□□ 1.11
Ddb1Q3U1J4 Gm9925-201ENSMUST00000066583 483 ntAPPRIS P1 BASIC22.01■■□□□ 1.11
Ddb1Q3U1J4 Iqcd-202ENSMUST00000094391 1673 ntAPPRIS P2 TSL 1 (best) BASIC22.01■■□□□ 1.11
Retrieved 100 of 76,532 protein–RNA pairs in 29.7 ms