Protein–RNA interactions for Protein: Q05722

Col9a1, Collagen alpha-1(IX) chain, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col9a1Q05722 Tm4sf19-201ENSMUST00000115149 1257 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col9a1Q05722 Pou2f3-rs1-201ENSMUST00000120271 1046 ntBASIC17.05■□□□□ 0.32
Col9a1Q05722 0610025J13Rik-201ENSMUST00000131324 652 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Col9a1Q05722 Ptpa-208ENSMUST00000131476 989 ntTSL 2 BASIC17.05■□□□□ 0.32
Col9a1Q05722 AA543401-201ENSMUST00000164248 1269 ntBASIC17.05■□□□□ 0.32
Col9a1Q05722 Ankrd65-202ENSMUST00000165000 1140 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
Col9a1Q05722 Csrp3-202ENSMUST00000167786 899 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col9a1Q05722 6430573P05Rik-202ENSMUST00000192648 597 ntTSL 3 BASIC17.05■□□□□ 0.32
Col9a1Q05722 Bcl2l12-201ENSMUST00000003290 1075 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col9a1Q05722 Foxd1-201ENSMUST00000105098 5064 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
Col9a1Q05722 Hmgb3-201ENSMUST00000015361 1544 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Col9a1Q05722 Gnb2-203ENSMUST00000111023 1471 ntTSL 5 BASIC17.05■□□□□ 0.32
Col9a1Q05722 Rab3a-201ENSMUST00000034301 1363 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Col9a1Q05722 Tmem143-201ENSMUST00000069772 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Col9a1Q05722 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Col9a1Q05722 Samd10-201ENSMUST00000060173 2164 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Col9a1Q05722 Triqk-201ENSMUST00000143186 888 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Col9a1Q05722 Gm13830-202ENSMUST00000144202 381 ntTSL 3 BASIC17.04■□□□□ 0.32
Col9a1Q05722 Alms1-ps2-201ENSMUST00000160606 1170 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Col9a1Q05722 Gm37280-201ENSMUST00000194583 375 ntTSL 3 BASIC17.04■□□□□ 0.32
Col9a1Q05722 Lce1l-201ENSMUST00000054426 670 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Col9a1Q05722 Hs3st4-201ENSMUST00000106437 3189 ntAPPRIS P1 TSL 3 BASIC17.04■□□□□ 0.32
Col9a1Q05722 Ralgapa1-204ENSMUST00000219432 6631 ntTSL 5 BASIC17.04■□□□□ 0.32
Col9a1Q05722 Prdm5-201ENSMUST00000031973 1488 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Col9a1Q05722 Kctd13-201ENSMUST00000032924 1676 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Col9a1Q05722 Gp5-201ENSMUST00000061190 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Col9a1Q05722 Rasgrp2-206ENSMUST00000113472 2124 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Col9a1Q05722 Golph3-202ENSMUST00000226517 2359 ntBASIC17.03■□□□□ 0.32
Col9a1Q05722 Mrpl55-204ENSMUST00000108786 757 ntTSL 2 BASIC17.03■□□□□ 0.32
Col9a1Q05722 Chchd7-208ENSMUST00000121651 620 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Col9a1Q05722 Fhad1os2-201ENSMUST00000152351 945 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Col9a1Q05722 Gm37171-201ENSMUST00000192636 1185 ntBASIC17.03■□□□□ 0.32
Col9a1Q05722 Snapc2-203ENSMUST00000208316 1190 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Col9a1Q05722 Gm31545-201ENSMUST00000209358 1219 ntTSL 5 BASIC17.03■□□□□ 0.32
Col9a1Q05722 Bpnt1-205ENSMUST00000210277 1226 ntTSL 5 BASIC17.03■□□□□ 0.32
Col9a1Q05722 Chchd7-201ENSMUST00000041122 672 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Col9a1Q05722 Coq10b-201ENSMUST00000027125 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Col9a1Q05722 Vps72-201ENSMUST00000009102 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Col9a1Q05722 Gm3020-202ENSMUST00000167430 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Col9a1Q05722 Gm10409-201ENSMUST00000170123 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Col9a1Q05722 Tmbim1-201ENSMUST00000016309 2378 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Col9a1Q05722 Klrg2-201ENSMUST00000096030 2276 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Col9a1Q05722 Gnb2-212ENSMUST00000150063 1569 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Col9a1Q05722 Folr1-204ENSMUST00000106985 1313 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
Col9a1Q05722 Thap4-206ENSMUST00000190116 5558 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Col9a1Q05722 Gpr137b-ps-203ENSMUST00000220758 1942 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Col9a1Q05722 Naa50-202ENSMUST00000063542 2136 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Col9a1Q05722 Sept7-201ENSMUST00000115272 2533 ntAPPRIS ALT1 TSL 5 BASIC17.02■□□□□ 0.32
Col9a1Q05722 Gm34220-201ENSMUST00000223001 2709 ntBASIC17.02■□□□□ 0.32
Col9a1Q05722 Pkd2-201ENSMUST00000086831 5219 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Col9a1Q05722 Chchd7-203ENSMUST00000119307 889 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
Col9a1Q05722 Gm38119-201ENSMUST00000192027 755 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
Col9a1Q05722 Arf5-201ENSMUST00000020717 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Col9a1Q05722 Spr-201ENSMUST00000045986 1230 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Col9a1Q05722 Gga1-201ENSMUST00000041587 3034 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Col9a1Q05722 Mroh6-201ENSMUST00000184858 2216 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
Col9a1Q05722 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
Col9a1Q05722 Cyp4f15-204ENSMUST00000168171 2168 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.31
Col9a1Q05722 Tubg1-201ENSMUST00000043680 1802 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Col9a1Q05722 Arhgap42-203ENSMUST00000183182 1458 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Col9a1Q05722 Ftl2-ps-201ENSMUST00000118517 552 ntBASIC17.01■□□□□ 0.31
Col9a1Q05722 2410080I02Rik-201ENSMUST00000142712 414 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Col9a1Q05722 Ntpcr-205ENSMUST00000143504 520 ntTSL 5 BASIC17.01■□□□□ 0.31
Col9a1Q05722 Gm16838-201ENSMUST00000144594 816 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Col9a1Q05722 Zbtb7c-202ENSMUST00000167921 2147 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Col9a1Q05722 Vsig2-201ENSMUST00000002008 1166 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Col9a1Q05722 AC155729.1-201ENSMUST00000227758 544 ntBASIC17.01■□□□□ 0.31
Col9a1Q05722 Tmem52-201ENSMUST00000023920 932 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Col9a1Q05722 2010003K11Rik-201ENSMUST00000048482 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Col9a1Q05722 Rassf8-202ENSMUST00000058538 1131 ntBASIC17.01■□□□□ 0.31
Col9a1Q05722 Gm15590-201ENSMUST00000078419 552 ntBASIC17.01■□□□□ 0.31
Col9a1Q05722 Snx5-201ENSMUST00000028909 2419 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Col9a1Q05722 Gm20460-201ENSMUST00000168709 1572 ntTSL 5 BASIC17.01■□□□□ 0.31
Col9a1Q05722 Eva1c-202ENSMUST00000099543 1554 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Col9a1Q05722 Arhgap44-202ENSMUST00000093001 2256 ntTSL 2 BASIC17■□□□□ 0.31
Col9a1Q05722 Tedc1-201ENSMUST00000049271 2441 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Col9a1Q05722 Spg21-202ENSMUST00000213957 1302 ntTSL 1 (best) BASIC17■□□□□ 0.31
Col9a1Q05722 Mgat5b-201ENSMUST00000103027 4258 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
Col9a1Q05722 Lcn12-202ENSMUST00000114245 619 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
Col9a1Q05722 Psmc4-206ENSMUST00000140053 1244 ntTSL 5 BASIC17■□□□□ 0.31
Col9a1Q05722 Gm23547-201ENSMUST00000158210 271 ntBASIC17■□□□□ 0.31
Col9a1Q05722 Gm13830-205ENSMUST00000201195 1155 ntBASIC17■□□□□ 0.31
Col9a1Q05722 Emd-201ENSMUST00000002029 1595 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Col9a1Q05722 Gm9731-201ENSMUST00000209480 747 ntBASIC17■□□□□ 0.31
Col9a1Q05722 Gm45609-204ENSMUST00000209837 1207 ntTSL 5 BASIC17■□□□□ 0.31
Col9a1Q05722 AC153845.2-202ENSMUST00000213372 807 ntTSL 3 BASIC17■□□□□ 0.31
Col9a1Q05722 CT025535.1-201ENSMUST00000227172 491 ntBASIC17■□□□□ 0.31
Col9a1Q05722 Cidea-201ENSMUST00000025404 1164 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Col9a1Q05722 Tmem107-202ENSMUST00000094081 1263 ntTSL 1 (best) BASIC17■□□□□ 0.31
Col9a1Q05722 1700086L19Rik-201ENSMUST00000095617 706 ntBASIC17■□□□□ 0.31
Col9a1Q05722 Crxos-201ENSMUST00000098801 934 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Col9a1Q05722 Jak2-202ENSMUST00000065796 5030 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
Col9a1Q05722 Gm16933-201ENSMUST00000141741 2169 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Col9a1Q05722 Rtcb-201ENSMUST00000001834 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Col9a1Q05722 4930528D03Rik-201ENSMUST00000181528 1339 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Col9a1Q05722 Bicdl1-203ENSMUST00000118576 1874 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Col9a1Q05722 Trim72-202ENSMUST00000106248 2134 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
Col9a1Q05722 Kctd9-201ENSMUST00000078053 3157 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Col9a1Q05722 Rab3il1-201ENSMUST00000113161 2225 ntAPPRIS P3 TSL 5 BASIC16.99■□□□□ 0.31
Col9a1Q05722 Edn3-203ENSMUST00000140908 731 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
Retrieved 100 of 76,532 protein–RNA pairs in 19.1 ms