Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Ddx19a-201ENSMUST00000040416 2547 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Shmt1P50431 Cyth2-201ENSMUST00000056820 2527 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Shmt1P50431 Comtd1-204ENSMUST00000177527 714 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
Shmt1P50431 Snrnp48-202ENSMUST00000178564 847 ntTSL 5 BASIC18.37■□□□□ 0.53
Shmt1P50431 Gm4217-201ENSMUST00000182243 1002 ntBASIC18.37■□□□□ 0.53
Shmt1P50431 Lamtor5-202ENSMUST00000199317 743 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Shmt1P50431 Krt88-201ENSMUST00000023781 903 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Shmt1P50431 Zfpl1-201ENSMUST00000025707 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Shmt1P50431 Dctn3-201ENSMUST00000030158 973 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Shmt1P50431 Gng11-201ENSMUST00000031670 919 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Shmt1P50431 Abhd11-206ENSMUST00000154469 1473 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Shmt1P50431 Plekhf2-201ENSMUST00000054776 2977 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Shmt1P50431 Tlk2-201ENSMUST00000015107 3212 ntAPPRIS P3 TSL 5 BASIC18.37■□□□□ 0.53
Shmt1P50431 Plekha4-206ENSMUST00000211155 2044 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
Shmt1P50431 Apba3-201ENSMUST00000057798 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Shmt1P50431 Tmem198-202ENSMUST00000113575 2185 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Shmt1P50431 Lrrc75b-201ENSMUST00000051129 4601 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Shmt1P50431 Zfp768-201ENSMUST00000060783 2356 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Shmt1P50431 Gpat3-203ENSMUST00000112887 3059 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Shmt1P50431 Nrxn2-204ENSMUST00000113461 5505 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
Shmt1P50431 Tmc6-202ENSMUST00000103025 1279 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Shmt1P50431 Thegl-202ENSMUST00000117880 1641 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Shmt1P50431 Ccl27a-219ENSMUST00000173865 657 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Shmt1P50431 Adgra2-202ENSMUST00000178514 5129 ntTSL 5 BASIC18.36■□□□□ 0.53
Shmt1P50431 A930029G22Rik-201ENSMUST00000181032 1710 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Shmt1P50431 Carmn-201ENSMUST00000181155 1778 ntTSL 2 BASIC18.36■□□□□ 0.53
Shmt1P50431 Gm3488-202ENSMUST00000181562 1945 ntAPPRIS P5 TSL 5 BASIC18.36■□□□□ 0.53
Shmt1P50431 Gm7889-201ENSMUST00000185591 958 ntBASIC18.36■□□□□ 0.53
Shmt1P50431 Gm7791-201ENSMUST00000219066 539 ntBASIC18.36■□□□□ 0.53
Shmt1P50431 Mrpl21-202ENSMUST00000025745 1138 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
Shmt1P50431 Ift74-201ENSMUST00000030311 2139 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
Shmt1P50431 Ripply2-201ENSMUST00000058846 503 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Shmt1P50431 Ahcyl2-204ENSMUST00000115242 5152 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
Shmt1P50431 Smap2-201ENSMUST00000043200 2905 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Shmt1P50431 Tbx20-202ENSMUST00000166018 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Shmt1P50431 4732440D04Rik-203ENSMUST00000191825 5428 ntBASIC18.35■□□□□ 0.53
Shmt1P50431 Slc35g1-201ENSMUST00000054098 3471 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Shmt1P50431 Gprc5c-203ENSMUST00000122967 1709 ntTSL 5 BASIC18.35■□□□□ 0.53
Shmt1P50431 Panx2-203ENSMUST00000162424 3391 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Shmt1P50431 Gm45623-201ENSMUST00000210744 1457 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
Shmt1P50431 Gne-202ENSMUST00000102936 2920 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Shmt1P50431 Mpdu1-201ENSMUST00000018905 1321 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Shmt1P50431 Fam104a-201ENSMUST00000120194 2619 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Shmt1P50431 Rps5-202ENSMUST00000108539 794 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
Shmt1P50431 Slc2a8-204ENSMUST00000153484 1168 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Shmt1P50431 Steap1-201ENSMUST00000015796 1230 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Shmt1P50431 Khdc3-204ENSMUST00000173734 1228 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Shmt1P50431 Gm10231-201ENSMUST00000181584 441 ntBASIC18.35■□□□□ 0.53
Shmt1P50431 Atp5g2-202ENSMUST00000185641 731 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Shmt1P50431 Gm10175-202ENSMUST00000208752 441 ntBASIC18.35■□□□□ 0.53
Shmt1P50431 Atp5g2-201ENSMUST00000075630 441 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Shmt1P50431 Fbxw5-201ENSMUST00000015239 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Shmt1P50431 Tmem260-209ENSMUST00000226422 6333 ntAPPRIS ALT2 BASIC18.35■□□□□ 0.53
Shmt1P50431 Jph1-201ENSMUST00000038382 4809 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Shmt1P50431 Trp73-203ENSMUST00000105643 1916 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
Shmt1P50431 Gpaa1-210ENSMUST00000172281 1809 ntTSL 5 BASIC18.35■□□□□ 0.53
Shmt1P50431 Alyref-201ENSMUST00000026125 3527 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Shmt1P50431 Bmt2-201ENSMUST00000045235 4143 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Shmt1P50431 Pacsin1-203ENSMUST00000114872 1647 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Shmt1P50431 BC029722-201ENSMUST00000124586 1615 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Shmt1P50431 Slc25a3-201ENSMUST00000076694 1612 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Shmt1P50431 Map4k5-203ENSMUST00000110570 4498 ntAPPRIS P5 TSL 5 BASIC18.34■□□□□ 0.53
Shmt1P50431 Xxylt1-201ENSMUST00000055389 2987 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Shmt1P50431 Zc3hav1l-201ENSMUST00000058524 6536 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Shmt1P50431 Nfkbib-201ENSMUST00000032815 2061 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Shmt1P50431 Srf-201ENSMUST00000015749 4093 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Shmt1P50431 Ablim1-204ENSMUST00000111524 1251 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Shmt1P50431 Nmnat3-203ENSMUST00000112938 848 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Shmt1P50431 4833413E03Rik-201ENSMUST00000013706 1091 ntTSL 5 BASIC18.34■□□□□ 0.53
Shmt1P50431 Inppl1-202ENSMUST00000165052 4730 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Shmt1P50431 Ccdc105-201ENSMUST00000105383 1714 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Shmt1P50431 Fam129c-208ENSMUST00000143662 2267 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
Shmt1P50431 Tnrc18-201ENSMUST00000151477 6487 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Shmt1P50431 Auh-202ENSMUST00000110031 3235 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Shmt1P50431 A930012L18Rik-201ENSMUST00000181094 2364 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Shmt1P50431 Msl1-204ENSMUST00000107487 2836 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.53
Shmt1P50431 Stk32c-202ENSMUST00000165870 1883 ntTSL 5 BASIC18.33■□□□□ 0.53
Shmt1P50431 2810474O19Rik-201ENSMUST00000046689 6066 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.53
Shmt1P50431 Card10-203ENSMUST00000170584 3220 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.53
Shmt1P50431 Tia1-203ENSMUST00000095754 1789 ntAPPRIS ALT1 TSL 5 BASIC18.33■□□□□ 0.53
Shmt1P50431 Etv5-201ENSMUST00000079601 3975 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Shmt1P50431 Izumo1r-204ENSMUST00000121116 726 ntTSL 2 BASIC18.33■□□□□ 0.52
Shmt1P50431 Gm27463-201ENSMUST00000183569 57 ntBASIC18.33■□□□□ 0.52
Shmt1P50431 Prok1-201ENSMUST00000049852 813 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Shmt1P50431 Epc2-201ENSMUST00000092123 4697 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Shmt1P50431 Mgea5-201ENSMUST00000026243 5024 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Shmt1P50431 Tfap2a-208ENSMUST00000224999 2058 ntAPPRIS ALT1 BASIC18.33■□□□□ 0.52
Shmt1P50431 Pdlim5-211ENSMUST00000198381 1555 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
Shmt1P50431 Pi4k2b-201ENSMUST00000031081 3139 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
Shmt1P50431 Prss54-205ENSMUST00000213096 1501 ntAPPRIS P3 TSL 5 BASIC18.33■□□□□ 0.52
Shmt1P50431 Sept8-203ENSMUST00000120878 1806 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
Shmt1P50431 Nptx1-201ENSMUST00000026670 5217 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Shmt1P50431 Acbd4-201ENSMUST00000024492 2075 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
Shmt1P50431 Glmn-201ENSMUST00000078021 2015 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Shmt1P50431 Klhl25-201ENSMUST00000092073 3385 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Shmt1P50431 Klhl33-201ENSMUST00000164415 1602 ntTSL 5 BASIC18.32■□□□□ 0.52
Shmt1P50431 Pdcd5-202ENSMUST00000120714 767 ntTSL 3 BASIC18.32■□□□□ 0.52
Shmt1P50431 Serf1-205ENSMUST00000152286 465 ntTSL 3 BASIC18.32■□□□□ 0.52
Shmt1P50431 4732471J01Rik-202ENSMUST00000205787 991 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Shmt1P50431 Lsm10-201ENSMUST00000055575 943 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 22.9 ms