Protein–RNA interactions for Protein: P33435

Mmp13, Collagenase 3, mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Mmp13P33435 Ndufb2-202ENSMUST00000119379 455 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Mmp13P33435 4931413I07Rik-201ENSMUST00000173637 764 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Mmp13P33435 Nfu1-201ENSMUST00000032060 948 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
Mmp13P33435 Prrg2-201ENSMUST00000007981 1295 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Mmp13P33435 Fam129c-208ENSMUST00000143662 2267 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
Mmp13P33435 Wisp2-201ENSMUST00000029188 1719 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Mmp13P33435 Ift74-201ENSMUST00000030311 2139 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
Mmp13P33435 Garem1-201ENSMUST00000049260 4923 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Mmp13P33435 Fam110a-204ENSMUST00000109865 1853 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
Mmp13P33435 Mon2-202ENSMUST00000073792 9301 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
Mmp13P33435 Tm7sf3-201ENSMUST00000037709 3241 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Mmp13P33435 Ctdsp2-202ENSMUST00000105256 4817 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Mmp13P33435 Slain2-201ENSMUST00000143829 4828 ntTSL 5 BASIC17.79■□□□□ 0.44
Mmp13P33435 Ddhd2-206ENSMUST00000211688 2265 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Mmp13P33435 Aspscr1-205ENSMUST00000106160 1550 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Mmp13P33435 St3gal3-203ENSMUST00000106410 2225 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Mmp13P33435 Nrxn2-202ENSMUST00000113458 3503 ntTSL 5 BASIC17.79■□□□□ 0.44
Mmp13P33435 Pon1-201ENSMUST00000002663 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Mmp13P33435 Gas2-201ENSMUST00000051912 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Mmp13P33435 Gclm-201ENSMUST00000029769 5589 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Mmp13P33435 Crk-203ENSMUST00000108425 4290 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Mmp13P33435 Selenos-201ENSMUST00000101801 1191 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Mmp13P33435 Gm2399-201ENSMUST00000104944 225 ntBASIC17.79■□□□□ 0.44
Mmp13P33435 Naf1-201ENSMUST00000118009 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Mmp13P33435 Gm27275-201ENSMUST00000184318 272 ntBASIC17.79■□□□□ 0.44
Mmp13P33435 1700101I19Rik-202ENSMUST00000186712 510 ntBASIC17.79■□□□□ 0.44
Mmp13P33435 Gm44878-201ENSMUST00000205812 1295 ntBASIC17.79■□□□□ 0.44
Mmp13P33435 Mfap2-201ENSMUST00000071977 1073 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Mmp13P33435 Pacsin3-201ENSMUST00000028694 1862 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Mmp13P33435 Ccnd3-215ENSMUST00000183044 2064 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Mmp13P33435 Ppp1r1b-201ENSMUST00000078694 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Mmp13P33435 Nagpa-203ENSMUST00000147567 2230 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Mmp13P33435 Gm26795-201ENSMUST00000180993 1952 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Mmp13P33435 Iscu-202ENSMUST00000112311 1395 ntTSL 2 BASIC17.79■□□□□ 0.44
Mmp13P33435 Fam131b-203ENSMUST00000143278 4104 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
Mmp13P33435 Vopp1-201ENSMUST00000114297 2919 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Mmp13P33435 Shc3-201ENSMUST00000021898 1537 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Mmp13P33435 Sult2b1-204ENSMUST00000209739 1858 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
Mmp13P33435 2210016L21Rik-201ENSMUST00000031538 2607 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Mmp13P33435 Itgb1bp1-201ENSMUST00000076260 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Mmp13P33435 Polr3d-201ENSMUST00000000793 2016 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Mmp13P33435 Ntrk1-201ENSMUST00000029712 2588 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Mmp13P33435 Gm11527-201ENSMUST00000153795 596 ntTSL 2 BASIC17.78■□□□□ 0.44
Mmp13P33435 Tnnt2-201ENSMUST00000027671 1064 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
Mmp13P33435 Elac2-202ENSMUST00000101049 2884 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
Mmp13P33435 Ing1-202ENSMUST00000209565 1971 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Mmp13P33435 Mpst-201ENSMUST00000043865 1413 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Mmp13P33435 Rilpl2-201ENSMUST00000031347 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Mmp13P33435 Nfatc3-201ENSMUST00000109308 5984 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Mmp13P33435 Slc7a5-201ENSMUST00000045557 3517 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Mmp13P33435 Ddx41-204ENSMUST00000224765 2199 ntBASIC17.77■□□□□ 0.44
Mmp13P33435 Snap91-202ENSMUST00000074468 4336 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
Mmp13P33435 Otud5-202ENSMUST00000115665 3821 ntTSL 5 BASIC17.77■□□□□ 0.44
Mmp13P33435 Zfand5-201ENSMUST00000025659 2834 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Mmp13P33435 Cdc123-201ENSMUST00000043864 1827 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Mmp13P33435 Dbndd1-202ENSMUST00000176286 1344 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Mmp13P33435 Rara-204ENSMUST00000107475 2469 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Mmp13P33435 Cacng6-202ENSMUST00000183200 1977 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Mmp13P33435 Gm9954-202ENSMUST00000198686 4725 ntBASIC17.77■□□□□ 0.44
Mmp13P33435 Tor3a-207ENSMUST00000188964 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Mmp13P33435 Fam57b-207ENSMUST00000207020 1777 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Mmp13P33435 Sdr39u1-201ENSMUST00000111325 1255 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Mmp13P33435 Snca-201ENSMUST00000114268 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Mmp13P33435 Gm15847-201ENSMUST00000121417 1065 ntBASIC17.77■□□□□ 0.44
Mmp13P33435 Dmrta2os-202ENSMUST00000141893 691 ntTSL 3 BASIC17.77■□□□□ 0.44
Mmp13P33435 Alcam-206ENSMUST00000168071 878 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Mmp13P33435 Gm8520-201ENSMUST00000186517 868 ntBASIC17.77■□□□□ 0.44
Mmp13P33435 Rpl18-202ENSMUST00000209287 1027 ntTSL 3 BASIC17.77■□□□□ 0.44
Mmp13P33435 Grp-201ENSMUST00000025395 862 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Mmp13P33435 Rrp9-201ENSMUST00000047721 1586 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Mmp13P33435 Crebbp-201ENSMUST00000023165 10820 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Mmp13P33435 Igsf11-201ENSMUST00000023478 3443 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Mmp13P33435 Sbf1-205ENSMUST00000144585 6165 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
Mmp13P33435 Rnf157-201ENSMUST00000100202 4619 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.43
Mmp13P33435 Nkpd1-201ENSMUST00000078908 2753 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.43
Mmp13P33435 Ergic3-201ENSMUST00000006035 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Mmp13P33435 1700041G16Rik-202ENSMUST00000186344 1824 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
Mmp13P33435 Dok7-202ENSMUST00000101298 2443 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
Mmp13P33435 Ctcf-201ENSMUST00000005841 3782 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Mmp13P33435 Dach1-202ENSMUST00000071533 5219 ntAPPRIS P4 TSL 1 (best) BASIC17.76■□□□□ 0.43
Mmp13P33435 Igdcc4-205ENSMUST00000213533 6220 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Mmp13P33435 Igdcc4-201ENSMUST00000035499 6223 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Mmp13P33435 Bend4-204ENSMUST00000201972 8268 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
Mmp13P33435 Tle4-201ENSMUST00000052011 4555 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Mmp13P33435 Mtmr3-202ENSMUST00000109943 5674 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Mmp13P33435 Stk32c-202ENSMUST00000165870 1883 ntTSL 5 BASIC17.76■□□□□ 0.43
Mmp13P33435 Zfp691-202ENSMUST00000106355 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Mmp13P33435 Gm45472-201ENSMUST00000211295 1426 ntTSL 5 BASIC17.76■□□□□ 0.43
Mmp13P33435 Gm13168-201ENSMUST00000121771 632 ntBASIC17.76■□□□□ 0.43
Mmp13P33435 2700033N17Rik-201ENSMUST00000140185 721 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Mmp13P33435 2810405F15Rik-201ENSMUST00000195368 932 ntBASIC17.76■□□□□ 0.43
Mmp13P33435 Mtcl1-201ENSMUST00000086693 7221 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
Mmp13P33435 Rpf1-203ENSMUST00000199079 1978 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Mmp13P33435 Rala-201ENSMUST00000009003 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Mmp13P33435 Tspan10-201ENSMUST00000044105 1680 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Mmp13P33435 Mink1-205ENSMUST00000102559 4865 ntAPPRIS P4 TSL 1 (best) BASIC17.76■□□□□ 0.43
Mmp13P33435 Fiz1-203ENSMUST00000167804 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Mmp13P33435 Sncb-201ENSMUST00000036825 1351 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Mmp13P33435 Tm2d3-202ENSMUST00000065574 1478 ntAPPRIS P4 TSL 1 (best) BASIC17.75■□□□□ 0.43
Mmp13P33435 Zfp668-203ENSMUST00000106262 3169 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 29.8 ms