Protein–RNA interactions for Protein: O35493

Clk4, Dual specificity protein kinase CLK4, mousemouse

Predictions only

Length 481 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clk4O35493 Sft2d2-201ENSMUST00000043338 5535 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Clk4O35493 Acot1-201ENSMUST00000168120 2272 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Clk4O35493 Tmem136-202ENSMUST00000213544 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
Clk4O35493 Ccdc124-201ENSMUST00000007865 1356 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
Clk4O35493 Mtcp1-201ENSMUST00000033542 1592 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Clk4O35493 Tor3a-207ENSMUST00000188964 1750 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Clk4O35493 Crlf3-201ENSMUST00000061283 2396 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Clk4O35493 Gm37292-201ENSMUST00000192062 758 ntBASIC16.64■□□□□ 0.25
Clk4O35493 Ccnd2-202ENSMUST00000201066 983 ntTSL 2 BASIC16.64■□□□□ 0.25
Clk4O35493 Gm42545-201ENSMUST00000202755 922 ntBASIC16.64■□□□□ 0.25
Clk4O35493 Gm29791-202ENSMUST00000207888 369 ntBASIC16.64■□□□□ 0.25
Clk4O35493 Myl6-206ENSMUST00000218127 691 ntAPPRIS ALT1 TSL 2 BASIC16.64■□□□□ 0.25
Clk4O35493 Card10-202ENSMUST00000164826 4726 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Clk4O35493 Pigl-201ENSMUST00000014389 2174 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Clk4O35493 Dcaf5-201ENSMUST00000054145 5706 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Clk4O35493 Artn-202ENSMUST00000097913 1568 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Clk4O35493 Rab1b-201ENSMUST00000025804 1835 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Clk4O35493 Tmem80-201ENSMUST00000026578 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Clk4O35493 Farsa-201ENSMUST00000003906 1826 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Clk4O35493 Pdxdc1-202ENSMUST00000115802 2466 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Clk4O35493 Sybu-202ENSMUST00000110267 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Clk4O35493 Slc25a39-202ENSMUST00000107098 1606 ntAPPRIS ALT1 TSL 5 BASIC16.63■□□□□ 0.25
Clk4O35493 Negr1-202ENSMUST00000074015 4983 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Clk4O35493 Vegfa-201ENSMUST00000024747 2765 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Clk4O35493 Tmem196-201ENSMUST00000058644 1678 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
Clk4O35493 Ispd-207ENSMUST00000223205 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Clk4O35493 Lat2-202ENSMUST00000077636 1717 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Clk4O35493 Ern1-203ENSMUST00000106800 654 ntTSL 3 BASIC16.63■□□□□ 0.25
Clk4O35493 Ccdc58-202ENSMUST00000163352 970 ntTSL 3 BASIC16.63■□□□□ 0.25
Clk4O35493 Ccdc58-203ENSMUST00000164916 1096 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Clk4O35493 C430014B12Rik-202ENSMUST00000186858 657 ntTSL 2 BASIC16.63■□□□□ 0.25
Clk4O35493 Gm43183-201ENSMUST00000200632 547 ntBASIC16.63■□□□□ 0.25
Clk4O35493 Gm36736-201ENSMUST00000206060 646 ntTSL 3 BASIC16.63■□□□□ 0.25
Clk4O35493 Cdk2ap2-201ENSMUST00000025779 1080 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Clk4O35493 Prr29-201ENSMUST00000009354 1112 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Clk4O35493 Lcorl-202ENSMUST00000045586 5708 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Clk4O35493 Prmt6-201ENSMUST00000106567 2450 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
Clk4O35493 Lrrc45-201ENSMUST00000026139 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Clk4O35493 Agfg1-206ENSMUST00000189220 8044 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Clk4O35493 Scrib-202ENSMUST00000063747 5440 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Clk4O35493 Gm37374-201ENSMUST00000194954 1829 ntBASIC16.63■□□□□ 0.25
Clk4O35493 Snap91-202ENSMUST00000074468 4336 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
Clk4O35493 Eif4g3-201ENSMUST00000058133 2663 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Clk4O35493 A530084C06Rik-201ENSMUST00000170573 3200 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
Clk4O35493 Tnfsf13-201ENSMUST00000018896 1407 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Clk4O35493 Mapk7-201ENSMUST00000079080 3019 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Clk4O35493 Orai3-201ENSMUST00000061587 1996 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Clk4O35493 Atp11a-201ENSMUST00000033818 7549 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Clk4O35493 9330160F10Rik-201ENSMUST00000101007 2766 ntBASIC16.62■□□□□ 0.25
Clk4O35493 Ap2a2-201ENSMUST00000003038 4646 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Clk4O35493 Tm7sf2-202ENSMUST00000113543 1498 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Clk4O35493 Bcat2-201ENSMUST00000033098 1772 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Clk4O35493 Krt80-201ENSMUST00000077196 1774 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Clk4O35493 Rasip1-201ENSMUST00000057927 3202 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Clk4O35493 Tsks-201ENSMUST00000080233 1806 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
Clk4O35493 Atox1-201ENSMUST00000108857 541 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Clk4O35493 1110046J04Rik-201ENSMUST00000147622 397 ntTSL 3 BASIC16.62■□□□□ 0.25
Clk4O35493 Gm17035-201ENSMUST00000170557 419 ntTSL 3 BASIC16.62■□□□□ 0.25
Clk4O35493 Adrb2-201ENSMUST00000053640 2143 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
Clk4O35493 Strn-203ENSMUST00000145910 8629 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Clk4O35493 Atxn7-201ENSMUST00000022257 6853 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Clk4O35493 Olfr94-203ENSMUST00000222190 1611 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
Clk4O35493 Naxd-201ENSMUST00000033901 1359 ntTSL 2 BASIC16.62■□□□□ 0.25
Clk4O35493 Plppr2-203ENSMUST00000190387 2608 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Clk4O35493 Mpst-201ENSMUST00000043865 1413 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Clk4O35493 P2rx5-201ENSMUST00000006104 2395 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Clk4O35493 Kcnd3-202ENSMUST00000098761 7169 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Clk4O35493 Fndc4-202ENSMUST00000172435 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Clk4O35493 Clasp2-204ENSMUST00000213663 2727 ntTSL 5 BASIC16.61■□□□□ 0.25
Clk4O35493 Mir1199-201ENSMUST00000117015 119 ntBASIC16.61■□□□□ 0.25
Clk4O35493 Gm12382-201ENSMUST00000122005 922 ntBASIC16.61■□□□□ 0.25
Clk4O35493 Lypla1-208ENSMUST00000150971 877 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Clk4O35493 Mrpl13-205ENSMUST00000172387 1223 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Clk4O35493 2510002D24Rik-204ENSMUST00000191388 995 ntTSL 5 BASIC16.61■□□□□ 0.25
Clk4O35493 Tbc1d2b-202ENSMUST00000128874 3473 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Clk4O35493 Ncoa1-201ENSMUST00000085814 7329 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Clk4O35493 Zfp804a-201ENSMUST00000047527 4620 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Clk4O35493 CT010478.1-201ENSMUST00000220747 2787 ntBASIC16.6■□□□□ 0.25
Clk4O35493 Nsmf-202ENSMUST00000074422 2824 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Clk4O35493 Lsm6-201ENSMUST00000051867 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Clk4O35493 A230050P20Rik-201ENSMUST00000043911 1683 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Clk4O35493 Matn4-202ENSMUST00000103104 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Clk4O35493 Hmgn2-204ENSMUST00000105893 973 ntTSL 3 BASIC16.6■□□□□ 0.25
Clk4O35493 Aldh1a3-204ENSMUST00000174215 1066 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Clk4O35493 Gm3331-201ENSMUST00000183423 1017 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Clk4O35493 AC153881.1-201ENSMUST00000214448 284 ntBASIC16.6■□□□□ 0.25
Clk4O35493 Tmem14c-201ENSMUST00000021790 914 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Clk4O35493 Plpp1-202ENSMUST00000070951 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Clk4O35493 Syngr1-202ENSMUST00000009728 819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Clk4O35493 Dgkz-202ENSMUST00000099709 3512 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
Clk4O35493 Fgf4-201ENSMUST00000060336 3030 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Clk4O35493 Cep83-201ENSMUST00000020212 3639 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Clk4O35493 Arf1-202ENSMUST00000163300 1991 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Clk4O35493 Mtch2-205ENSMUST00000136872 2596 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Clk4O35493 Fam104a-201ENSMUST00000120194 2619 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Clk4O35493 Atp2c1-204ENSMUST00000112558 5642 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
Clk4O35493 Itgb4-205ENSMUST00000106461 6208 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
Clk4O35493 Ccnd3-215ENSMUST00000183044 2064 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Clk4O35493 Vamp4-203ENSMUST00000132158 2752 ntTSL 3 BASIC16.6■□□□□ 0.25
Clk4O35493 Trim7-201ENSMUST00000046903 2161 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 57.4 ms