Protein–RNA interactions for Protein: Q4QRL3

Ccdc88b, Coiled-coil domain-containing protein 88B, mousemouse

Predictions only

Length 1,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88bQ4QRL3 Defb43-201ENSMUST00000100491 408 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
Ccdc88bQ4QRL3 Traj24-201ENSMUST00000103717 63 ntAPPRIS P1 BASIC5.47□□□□□ -1.53
Ccdc88bQ4QRL3 Gm24937-201ENSMUST00000122597 134 ntBASIC5.47□□□□□ -1.53
Ccdc88bQ4QRL3 Hba-ps4-201ENSMUST00000128900 447 ntBASIC5.47□□□□□ -1.53
Ccdc88bQ4QRL3 Gm26041-201ENSMUST00000158148 108 ntBASIC5.47□□□□□ -1.53
Ccdc88bQ4QRL3 Gm42936-201ENSMUST00000174019 652 ntTSL 3 BASIC5.47□□□□□ -1.53
Ccdc88bQ4QRL3 Gm27538-201ENSMUST00000185065 294 ntBASIC5.47□□□□□ -1.53
Ccdc88bQ4QRL3 Gm37996-201ENSMUST00000191859 367 ntBASIC5.47□□□□□ -1.53
Ccdc88bQ4QRL3 Gm43899-201ENSMUST00000203675 246 ntBASIC5.47□□□□□ -1.53
Ccdc88bQ4QRL3 Gm45735-201ENSMUST00000212779 319 ntBASIC5.47□□□□□ -1.53
Ccdc88bQ4QRL3 AC117588.3-201ENSMUST00000228517 325 ntBASIC5.47□□□□□ -1.53
Ccdc88bQ4QRL3 4930568D16Rik-201ENSMUST00000028243 1227 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
Ccdc88bQ4QRL3 Scgb1b2-201ENSMUST00000080635 424 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
Ccdc88bQ4QRL3 Dync2h1-204ENSMUST00000140466 14264 ntAPPRIS P2 TSL 5 BASIC5.47□□□□□ -1.53
Ccdc88bQ4QRL3 Ccdc152-202ENSMUST00000226261 1327 ntAPPRIS P1 BASIC5.46□□□□□ -1.53
Ccdc88bQ4QRL3 Vmn1r39-203ENSMUST00000227285 2245 ntAPPRIS ALT2 BASIC5.46□□□□□ -1.53
Ccdc88bQ4QRL3 Mir1198-201ENSMUST00000116995 121 ntBASIC5.46□□□□□ -1.53
Ccdc88bQ4QRL3 Gm24681-201ENSMUST00000158760 107 ntBASIC5.46□□□□□ -1.53
Ccdc88bQ4QRL3 Gm29259-201ENSMUST00000186396 694 ntBASIC5.46□□□□□ -1.53
Ccdc88bQ4QRL3 Igkv9-128-201ENSMUST00000196602 353 ntBASIC5.46□□□□□ -1.53
Ccdc88bQ4QRL3 Scoc-204ENSMUST00000212449 280 ntTSL 3 BASIC5.46□□□□□ -1.53
Ccdc88bQ4QRL3 AC099578.1-201ENSMUST00000220147 435 ntBASIC5.46□□□□□ -1.53
Ccdc88bQ4QRL3 AC117797.2-201ENSMUST00000224419 531 ntBASIC5.46□□□□□ -1.53
Ccdc88bQ4QRL3 AC167669.1-201ENSMUST00000224932 384 ntBASIC5.46□□□□□ -1.53
Ccdc88bQ4QRL3 Olfr847-201ENSMUST00000079620 939 ntAPPRIS P1 BASIC5.46□□□□□ -1.53
Ccdc88bQ4QRL3 Olfr1188-201ENSMUST00000090701 968 ntAPPRIS P2 BASIC5.46□□□□□ -1.53
Ccdc88bQ4QRL3 Olfr577-202ENSMUST00000214080 3282 ntAPPRIS P1 TSL 5 BASIC5.46□□□□□ -1.54
Ccdc88bQ4QRL3 Gm884-201ENSMUST00000059279 10977 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
Ccdc88bQ4QRL3 Vmn1r202-202ENSMUST00000228020 5441 ntAPPRIS P1 BASIC5.46□□□□□ -1.54
Ccdc88bQ4QRL3 C730045M19Rik-201ENSMUST00000201944 1315 ntBASIC5.46□□□□□ -1.54
Ccdc88bQ4QRL3 Tbx22-201ENSMUST00000068451 2947 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
Ccdc88bQ4QRL3 2810403D21Rik-202ENSMUST00000124329 1660 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
Ccdc88bQ4QRL3 Junos-205ENSMUST00000130684 614 ntTSL 3 BASIC5.45□□□□□ -1.54
Ccdc88bQ4QRL3 Gm20777-201ENSMUST00000177818 699 ntAPPRIS P1 BASIC5.45□□□□□ -1.54
Ccdc88bQ4QRL3 Gm20873-201ENSMUST00000179410 699 ntAPPRIS P1 BASIC5.45□□□□□ -1.54
Ccdc88bQ4QRL3 Gm20737-201ENSMUST00000179665 699 ntAPPRIS P1 BASIC5.45□□□□□ -1.54
Ccdc88bQ4QRL3 Gm21310-201ENSMUST00000180130 699 ntAPPRIS P1 BASIC5.45□□□□□ -1.54
Ccdc88bQ4QRL3 Mir7068-201ENSMUST00000183439 74 ntBASIC5.45□□□□□ -1.54
Ccdc88bQ4QRL3 Gm28550-201ENSMUST00000189125 618 ntTSL 5 BASIC5.45□□□□□ -1.54
Ccdc88bQ4QRL3 Gm29365-201ENSMUST00000189461 699 ntBASIC5.45□□□□□ -1.54
Ccdc88bQ4QRL3 Gm28460-202ENSMUST00000190590 618 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
Ccdc88bQ4QRL3 A930014E01Rik-201ENSMUST00000194572 330 ntBASIC5.45□□□□□ -1.54
Ccdc88bQ4QRL3 AC173115.1-201ENSMUST00000220835 211 ntBASIC5.45□□□□□ -1.54
Ccdc88bQ4QRL3 Gm42547-201ENSMUST00000201159 3798 ntBASIC5.45□□□□□ -1.54
Ccdc88bQ4QRL3 Nlrp4d-201ENSMUST00000182420 2946 ntBASIC5.45□□□□□ -1.54
Ccdc88bQ4QRL3 Olfr630-201ENSMUST00000106880 2198 ntAPPRIS P1 TSL 5 BASIC5.45□□□□□ -1.54
Ccdc88bQ4QRL3 Olfr905-202ENSMUST00000214377 4429 ntAPPRIS P1 TSL 5 BASIC5.45□□□□□ -1.54
Ccdc88bQ4QRL3 Cfh-206ENSMUST00000192880 3746 ntTSL 5 BASIC5.45□□□□□ -1.54
Ccdc88bQ4QRL3 2610042L04Rik-201ENSMUST00000112778 599 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
Ccdc88bQ4QRL3 Ap3s1-ps1-201ENSMUST00000117113 579 ntBASIC5.45□□□□□ -1.54
Ccdc88bQ4QRL3 4930405D11Rik-201ENSMUST00000132218 568 ntTSL 3 BASIC5.45□□□□□ -1.54
Ccdc88bQ4QRL3 Gm43439-201ENSMUST00000138710 322 ntTSL 3 BASIC5.45□□□□□ -1.54
Ccdc88bQ4QRL3 Gm15200-201ENSMUST00000149950 410 ntTSL 2 BASIC5.45□□□□□ -1.54
Ccdc88bQ4QRL3 Ap3s1-ps2-201ENSMUST00000178107 579 ntBASIC5.45□□□□□ -1.54
Ccdc88bQ4QRL3 Gm28959-201ENSMUST00000186713 551 ntTSL 5 BASIC5.45□□□□□ -1.54
Ccdc88bQ4QRL3 Gm28920-201ENSMUST00000189957 699 ntBASIC5.45□□□□□ -1.54
Ccdc88bQ4QRL3 Trbv7-201ENSMUST00000193339 402 ntBASIC5.45□□□□□ -1.54
Ccdc88bQ4QRL3 Gm18387-201ENSMUST00000220333 702 ntBASIC5.45□□□□□ -1.54
Ccdc88bQ4QRL3 Gm30198-201ENSMUST00000222873 824 ntTSL 2 BASIC5.45□□□□□ -1.54
Ccdc88bQ4QRL3 AC154552.2-201ENSMUST00000223117 794 ntTSL 5 BASIC5.45□□□□□ -1.54
Ccdc88bQ4QRL3 AC122937.1-201ENSMUST00000226405 793 ntBASIC5.45□□□□□ -1.54
Ccdc88bQ4QRL3 Olfr147-201ENSMUST00000056364 1166 ntAPPRIS P2 TSL 2 BASIC5.45□□□□□ -1.54
Ccdc88bQ4QRL3 Prrc2c-210ENSMUST00000182660 11502 ntAPPRIS P2 TSL 5 BASIC5.45□□□□□ -1.54
Ccdc88bQ4QRL3 Gm26733-201ENSMUST00000180846 2046 ntTSL 5 BASIC5.44□□□□□ -1.54
Ccdc88bQ4QRL3 Vmn2r-ps57-201ENSMUST00000173861 2598 ntBASIC5.44□□□□□ -1.54
Ccdc88bQ4QRL3 Olfr1408-202ENSMUST00000200689 3453 ntAPPRIS P1 TSL 3 BASIC5.44□□□□□ -1.54
Ccdc88bQ4QRL3 Trav6-7-dv9-201ENSMUST00000103638 379 ntAPPRIS P1 BASIC5.44□□□□□ -1.54
Ccdc88bQ4QRL3 Gm2042-201ENSMUST00000110145 1894 ntAPPRIS P3 TSL 1 (best) BASIC5.44□□□□□ -1.54
Ccdc88bQ4QRL3 Rps11-ps5-201ENSMUST00000117302 472 ntBASIC5.44□□□□□ -1.54
Ccdc88bQ4QRL3 Gm6982-201ENSMUST00000118752 1560 ntBASIC5.44□□□□□ -1.54
Ccdc88bQ4QRL3 Prlr-205ENSMUST00000128921 3836 ntAPPRIS ALT2 TSL 1 (best) BASIC5.44□□□□□ -1.54
Ccdc88bQ4QRL3 Gm22311-201ENSMUST00000158006 110 ntBASIC5.44□□□□□ -1.54
Ccdc88bQ4QRL3 Gm9023-201ENSMUST00000198408 1038 ntBASIC5.44□□□□□ -1.54
Ccdc88bQ4QRL3 Gm25203-202ENSMUST00000200458 216 ntBASIC5.44□□□□□ -1.54
Ccdc88bQ4QRL3 AC158798.1-201ENSMUST00000219714 711 ntTSL 5 BASIC5.44□□□□□ -1.54
Ccdc88bQ4QRL3 Gm18388-201ENSMUST00000222339 557 ntBASIC5.44□□□□□ -1.54
Ccdc88bQ4QRL3 AC130477.2-201ENSMUST00000228158 274 ntBASIC5.44□□□□□ -1.54
Ccdc88bQ4QRL3 Olfr1031-201ENSMUST00000050942 1011 ntAPPRIS P1 BASIC5.44□□□□□ -1.54
Ccdc88bQ4QRL3 Sprr2h-201ENSMUST00000059845 752 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
Ccdc88bQ4QRL3 Gm25203-201ENSMUST00000082842 215 ntBASIC5.44□□□□□ -1.54
Ccdc88bQ4QRL3 Slitrk6-201ENSMUST00000078386 4240 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
Ccdc88bQ4QRL3 Obox4-ps12-201ENSMUST00000180084 1362 ntBASIC5.43□□□□□ -1.54
Ccdc88bQ4QRL3 Abi3bp-203ENSMUST00000096013 4495 ntAPPRIS ALT2 TSL 1 (best) BASIC5.43□□□□□ -1.54
Ccdc88bQ4QRL3 Olfr1019-202ENSMUST00000213515 3031 ntAPPRIS P1 TSL 5 BASIC5.43□□□□□ -1.54
Ccdc88bQ4QRL3 Tmem71-201ENSMUST00000048372 2988 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
Ccdc88bQ4QRL3 Gm6176-202ENSMUST00000207633 1581 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
Ccdc88bQ4QRL3 Gm13064-201ENSMUST00000119125 557 ntBASIC5.43□□□□□ -1.54
Ccdc88bQ4QRL3 Gm13788-201ENSMUST00000120767 601 ntBASIC5.43□□□□□ -1.54
Ccdc88bQ4QRL3 Gm11339-201ENSMUST00000154766 490 ntTSL 5 BASIC5.43□□□□□ -1.54
Ccdc88bQ4QRL3 Prl8a8-201ENSMUST00000018389 927 ntAPPRIS P3 TSL 1 (best) BASIC5.43□□□□□ -1.54
Ccdc88bQ4QRL3 Gm29405-201ENSMUST00000187204 370 ntTSL 5 BASIC5.43□□□□□ -1.54
Ccdc88bQ4QRL3 Gm29557-201ENSMUST00000188245 370 ntTSL 5 BASIC5.43□□□□□ -1.54
Ccdc88bQ4QRL3 Gm28174-201ENSMUST00000191003 370 ntTSL 5 BASIC5.43□□□□□ -1.54
Ccdc88bQ4QRL3 CT030161.1-201ENSMUST00000218411 124 ntBASIC5.43□□□□□ -1.54
Ccdc88bQ4QRL3 Olfr948-201ENSMUST00000076516 966 ntAPPRIS P1 BASIC5.43□□□□□ -1.54
Ccdc88bQ4QRL3 Gm22979-201ENSMUST00000082609 159 ntBASIC5.43□□□□□ -1.54
Ccdc88bQ4QRL3 Gm813-201ENSMUST00000099663 702 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
Ccdc88bQ4QRL3 Gm42675-201ENSMUST00000197552 4035 ntBASIC5.43□□□□□ -1.54
Ccdc88bQ4QRL3 Olfr392-201ENSMUST00000118463 3643 ntAPPRIS P1 TSL 2 BASIC5.42□□□□□ -1.54
Ccdc88bQ4QRL3 Gm36927-201ENSMUST00000192504 1841 ntBASIC5.42□□□□□ -1.54
Retrieved 100 of 76,532 protein–RNA pairs in 77 ms