Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Gm29437-201ENSMUST00000185865 696 ntBASIC6.32□□□□□ -1.4
Rnf40Q3U319 Gm28910-201ENSMUST00000185921 696 ntBASIC6.32□□□□□ -1.4
Rnf40Q3U319 Gm28812-201ENSMUST00000185963 696 ntBASIC6.32□□□□□ -1.4
Rnf40Q3U319 Gm29468-201ENSMUST00000185978 696 ntBASIC6.32□□□□□ -1.4
Rnf40Q3U319 Gm28854-201ENSMUST00000186218 696 ntBASIC6.32□□□□□ -1.4
Rnf40Q3U319 Gm28452-201ENSMUST00000186623 696 ntBASIC6.32□□□□□ -1.4
Rnf40Q3U319 Gm29298-201ENSMUST00000186704 696 ntBASIC6.32□□□□□ -1.4
Rnf40Q3U319 Gm28227-201ENSMUST00000186862 696 ntBASIC6.32□□□□□ -1.4
Rnf40Q3U319 Gm28796-201ENSMUST00000186905 696 ntBASIC6.32□□□□□ -1.4
Rnf40Q3U319 Gm28473-201ENSMUST00000187325 696 ntBASIC6.32□□□□□ -1.4
Rnf40Q3U319 Gm28787-201ENSMUST00000188357 696 ntBASIC6.32□□□□□ -1.4
Rnf40Q3U319 Gm29033-201ENSMUST00000189114 696 ntBASIC6.32□□□□□ -1.4
Rnf40Q3U319 Gm29614-201ENSMUST00000189263 694 ntBASIC6.32□□□□□ -1.4
Rnf40Q3U319 Gm28751-201ENSMUST00000189287 696 ntBASIC6.32□□□□□ -1.4
Rnf40Q3U319 Gm29559-201ENSMUST00000189412 696 ntBASIC6.32□□□□□ -1.4
Rnf40Q3U319 Gm28368-201ENSMUST00000189804 696 ntBASIC6.32□□□□□ -1.4
Rnf40Q3U319 Gm28716-201ENSMUST00000190217 696 ntBASIC6.32□□□□□ -1.4
Rnf40Q3U319 Gm28531-201ENSMUST00000190529 696 ntBASIC6.32□□□□□ -1.4
Rnf40Q3U319 Gm28165-201ENSMUST00000190669 694 ntBASIC6.32□□□□□ -1.4
Rnf40Q3U319 Gm2229-201ENSMUST00000193328 710 ntBASIC6.32□□□□□ -1.4
Rnf40Q3U319 Gm37990-201ENSMUST00000195821 696 ntBASIC6.32□□□□□ -1.4
Rnf40Q3U319 AC163357.1-201ENSMUST00000220847 233 ntBASIC6.32□□□□□ -1.4
Rnf40Q3U319 AC138329.1-201ENSMUST00000225040 471 ntBASIC6.32□□□□□ -1.4
Rnf40Q3U319 Dynap-201ENSMUST00000025390 1227 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
Rnf40Q3U319 Gm23645-201ENSMUST00000083228 108 ntBASIC6.32□□□□□ -1.4
Rnf40Q3U319 BC048559-202ENSMUST00000215667 3561 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
Rnf40Q3U319 Vmn1r196-204ENSMUST00000228382 6525 ntAPPRIS P2 BASIC6.32□□□□□ -1.4
Rnf40Q3U319 Ugt8a-203ENSMUST00000198610 3762 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
Rnf40Q3U319 Samd3-202ENSMUST00000164660 2620 ntAPPRIS ALT2 TSL 1 (best) BASIC6.32□□□□□ -1.4
Rnf40Q3U319 Samd3-203ENSMUST00000218301 2620 ntAPPRIS ALT2 TSL 1 (best) BASIC6.32□□□□□ -1.4
Rnf40Q3U319 Vmn1r71-209ENSMUST00000228526 5137 ntAPPRIS P2 BASIC6.32□□□□□ -1.4
Rnf40Q3U319 Gm5454-201ENSMUST00000052030 1453 ntBASIC6.32□□□□□ -1.4
Rnf40Q3U319 Pkn2-206ENSMUST00000173830 2808 ntTSL 5 BASIC6.32□□□□□ -1.4
Rnf40Q3U319 Nr3c1-204ENSMUST00000115571 6327 ntAPPRIS P2 TSL 1 (best) BASIC6.32□□□□□ -1.4
Rnf40Q3U319 Dock7-202ENSMUST00000075836 6704 ntAPPRIS ALT2 TSL 5 BASIC6.32□□□□□ -1.4
Rnf40Q3U319 Gm9930-201ENSMUST00000066742 3151 ntBASIC6.32□□□□□ -1.4
Rnf40Q3U319 Zfp994-201ENSMUST00000179996 4880 ntAPPRIS P1 TSL 5 BASIC6.32□□□□□ -1.4
Rnf40Q3U319 Gm32122-201ENSMUST00000212119 2259 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
Rnf40Q3U319 Gm16513-202ENSMUST00000201663 2485 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
Rnf40Q3U319 Gm15457-201ENSMUST00000129513 3990 ntTSL 2 BASIC6.32□□□□□ -1.4
Rnf40Q3U319 Gm7240-204ENSMUST00000222847 2239 ntTSL 2 BASIC6.31□□□□□ -1.4
Rnf40Q3U319 Gm4841-201ENSMUST00000090260 2838 ntAPPRIS P1 TSL 2 BASIC6.31□□□□□ -1.4
Rnf40Q3U319 AC156569.1-201ENSMUST00000222020 3841 ntBASIC6.31□□□□□ -1.4
Rnf40Q3U319 Gm43389-201ENSMUST00000196080 2595 ntBASIC6.31□□□□□ -1.4
Rnf40Q3U319 4930525G20Rik-201ENSMUST00000181912 2987 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
Rnf40Q3U319 Dazl-201ENSMUST00000010736 2942 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
Rnf40Q3U319 Gm44789-201ENSMUST00000207195 3101 ntBASIC6.31□□□□□ -1.4
Rnf40Q3U319 Olfr536-201ENSMUST00000064392 3853 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
Rnf40Q3U319 Cbx5-201ENSMUST00000108813 3661 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
Rnf40Q3U319 CT025556.1-201ENSMUST00000222965 1884 ntBASIC6.31□□□□□ -1.4
Rnf40Q3U319 Gm23437-201ENSMUST00000104036 127 ntBASIC6.31□□□□□ -1.4
Rnf40Q3U319 S100a1-202ENSMUST00000107340 577 ntTSL 2 BASIC6.31□□□□□ -1.4
Rnf40Q3U319 Gm15311-201ENSMUST00000119682 282 ntBASIC6.31□□□□□ -1.4
Rnf40Q3U319 Gm15305-201ENSMUST00000120354 288 ntBASIC6.31□□□□□ -1.4
Rnf40Q3U319 Smt3h2-ps-201ENSMUST00000121084 285 ntBASIC6.31□□□□□ -1.4
Rnf40Q3U319 Gm25783-201ENSMUST00000122525 190 ntBASIC6.31□□□□□ -1.4
Rnf40Q3U319 Gm13943-201ENSMUST00000144043 343 ntTSL 5 BASIC6.31□□□□□ -1.4
Rnf40Q3U319 Gm15471-201ENSMUST00000145893 625 ntTSL 2 BASIC6.31□□□□□ -1.4
Rnf40Q3U319 Gm2962-201ENSMUST00000159266 336 ntBASIC6.31□□□□□ -1.4
Rnf40Q3U319 Gm6133-201ENSMUST00000164064 948 ntAPPRIS P1 BASIC6.31□□□□□ -1.4
Rnf40Q3U319 Gm24106-201ENSMUST00000175498 127 ntBASIC6.31□□□□□ -1.4
Rnf40Q3U319 Gm27234-201ENSMUST00000183362 581 ntTSL 5 BASIC6.31□□□□□ -1.4
Rnf40Q3U319 Mir3473e-201ENSMUST00000183932 110 ntBASIC6.31□□□□□ -1.4
Rnf40Q3U319 Gm34882-201ENSMUST00000193245 974 ntTSL 5 BASIC6.31□□□□□ -1.4
Rnf40Q3U319 Gm20144-201ENSMUST00000203031 165 ntBASIC6.31□□□□□ -1.4
Rnf40Q3U319 Gm44386-201ENSMUST00000204288 429 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
Rnf40Q3U319 Gm45181-201ENSMUST00000207878 449 ntTSL 3 BASIC6.31□□□□□ -1.4
Rnf40Q3U319 AC099578.1-201ENSMUST00000220147 435 ntBASIC6.31□□□□□ -1.4
Rnf40Q3U319 AC114572.1-201ENSMUST00000227262 300 ntBASIC6.31□□□□□ -1.4
Rnf40Q3U319 Ryr3-204ENSMUST00000134358 14958 ntAPPRIS ALT2 TSL 5 BASIC6.31□□□□□ -1.4
Rnf40Q3U319 Pcdh9-202ENSMUST00000192221 5161 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
Rnf40Q3U319 Ryr3-210ENSMUST00000208151 15370 ntAPPRIS ALT2 TSL 5 BASIC6.31□□□□□ -1.4
Rnf40Q3U319 Dgkk-201ENSMUST00000067410 7155 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
Rnf40Q3U319 Gm3896-201ENSMUST00000176020 4094 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
Rnf40Q3U319 Olfr2-205ENSMUST00000214105 5798 ntAPPRIS P1 TSL 5 BASIC6.31□□□□□ -1.4
Rnf40Q3U319 Gm26691-202ENSMUST00000181952 4183 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
Rnf40Q3U319 Il18r1-206ENSMUST00000195684 2850 ntAPPRIS P1 TSL 5 BASIC6.31□□□□□ -1.4
Rnf40Q3U319 Clec4a2-202ENSMUST00000041779 2481 ntAPPRIS P3 TSL 1 (best) BASIC6.31□□□□□ -1.4
Rnf40Q3U319 AC151734.1-201ENSMUST00000227023 1740 ntBASIC6.3□□□□□ -1.4
Rnf40Q3U319 Lrrtm4-206ENSMUST00000136421 4435 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
Rnf40Q3U319 Olfr612-202ENSMUST00000214269 2420 ntAPPRIS P1 TSL 5 BASIC6.3□□□□□ -1.4
Rnf40Q3U319 AC122355.1-201ENSMUST00000228155 4184 ntBASIC6.3□□□□□ -1.4
Rnf40Q3U319 Dclre1a-204ENSMUST00000182276 4066 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
Rnf40Q3U319 Pramef6-202ENSMUST00000105767 1967 ntAPPRIS ALT2 TSL 5 BASIC6.3□□□□□ -1.4
Rnf40Q3U319 Gm43166-201ENSMUST00000202871 4379 ntTSL 5 BASIC6.3□□□□□ -1.4
Rnf40Q3U319 Igkv13-85-201ENSMUST00000114212 347 ntAPPRIS P1 BASIC6.3□□□□□ -1.4
Rnf40Q3U319 Gm15310-201ENSMUST00000117891 372 ntBASIC6.3□□□□□ -1.4
Rnf40Q3U319 Gm14877-201ENSMUST00000119803 478 ntBASIC6.3□□□□□ -1.4
Rnf40Q3U319 Gm11369-201ENSMUST00000120812 318 ntBASIC6.3□□□□□ -1.4
Rnf40Q3U319 Gm13153-201ENSMUST00000120969 637 ntBASIC6.3□□□□□ -1.4
Rnf40Q3U319 Gm13417-201ENSMUST00000155475 533 ntTSL 2 BASIC6.3□□□□□ -1.4
Rnf40Q3U319 Gm25281-201ENSMUST00000157270 104 ntBASIC6.3□□□□□ -1.4
Rnf40Q3U319 Gm25058-201ENSMUST00000157365 128 ntBASIC6.3□□□□□ -1.4
Rnf40Q3U319 Gm25989-201ENSMUST00000158761 133 ntBASIC6.3□□□□□ -1.4
Rnf40Q3U319 Gm15898-201ENSMUST00000162213 627 ntTSL 3 BASIC6.3□□□□□ -1.4
Rnf40Q3U319 Gm20484-201ENSMUST00000173738 231 ntTSL 2 BASIC6.3□□□□□ -1.4
Rnf40Q3U319 Gm18199-201ENSMUST00000173820 835 ntBASIC6.3□□□□□ -1.4
Rnf40Q3U319 Gm20643-201ENSMUST00000177284 322 ntTSL 3 BASIC6.3□□□□□ -1.4
Rnf40Q3U319 Gm21827-201ENSMUST00000178247 423 ntBASIC6.3□□□□□ -1.4
Rnf40Q3U319 Gm26844-201ENSMUST00000181690 673 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
Retrieved 100 of 76,532 protein–RNA pairs in 100 ms