Protein–RNA interactions for Protein: Q4QRL3

Ccdc88b, Coiled-coil domain-containing protein 88B, mousemouse

Predictions only

Length 1,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88bQ4QRL3 Cox20-ps-201ENSMUST00000119872 353 ntBASIC5.58□□□□□ -1.52
Ccdc88bQ4QRL3 4930419G24Rik-201ENSMUST00000125494 1058 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
Ccdc88bQ4QRL3 Gm17216-201ENSMUST00000130872 728 ntTSL 5 BASIC5.58□□□□□ -1.52
Ccdc88bQ4QRL3 Gm16068-201ENSMUST00000136557 504 ntTSL 3 BASIC5.58□□□□□ -1.52
Ccdc88bQ4QRL3 Gm13912-201ENSMUST00000156541 1860 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
Ccdc88bQ4QRL3 Gm24734-201ENSMUST00000158860 262 ntBASIC5.58□□□□□ -1.52
Ccdc88bQ4QRL3 Gm17075-201ENSMUST00000171924 670 ntBASIC5.58□□□□□ -1.52
Ccdc88bQ4QRL3 Mir7009-201ENSMUST00000184519 64 ntBASIC5.58□□□□□ -1.52
Ccdc88bQ4QRL3 Gm28113-201ENSMUST00000188280 229 ntBASIC5.58□□□□□ -1.52
Ccdc88bQ4QRL3 Gm28358-202ENSMUST00000189292 223 ntBASIC5.58□□□□□ -1.52
Ccdc88bQ4QRL3 Gm37625-201ENSMUST00000194969 4872 ntBASIC5.58□□□□□ -1.52
Ccdc88bQ4QRL3 Gm6980-201ENSMUST00000214327 1003 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
Ccdc88bQ4QRL3 AC107757.3-201ENSMUST00000226312 535 ntBASIC5.58□□□□□ -1.52
Ccdc88bQ4QRL3 Stard9-207ENSMUST00000180041 15102 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
Ccdc88bQ4QRL3 Gm37868-201ENSMUST00000195578 2735 ntBASIC5.58□□□□□ -1.52
Ccdc88bQ4QRL3 Gm11576-201ENSMUST00000117433 417 ntBASIC5.58□□□□□ -1.52
Ccdc88bQ4QRL3 Gm15875-201ENSMUST00000152264 273 ntTSL 3 BASIC5.58□□□□□ -1.52
Ccdc88bQ4QRL3 Vmn1r-ps145-201ENSMUST00000175863 424 ntBASIC5.58□□□□□ -1.52
Ccdc88bQ4QRL3 Gm20688-201ENSMUST00000176779 512 ntTSL 5 BASIC5.58□□□□□ -1.52
Ccdc88bQ4QRL3 Gm29093-201ENSMUST00000187366 409 ntTSL 5 BASIC5.58□□□□□ -1.52
Ccdc88bQ4QRL3 4930595O18Rik-201ENSMUST00000205099 607 ntBASIC5.58□□□□□ -1.52
Ccdc88bQ4QRL3 AC121966.1-201ENSMUST00000221458 282 ntBASIC5.58□□□□□ -1.52
Ccdc88bQ4QRL3 AC091783.4-201ENSMUST00000224940 611 ntBASIC5.58□□□□□ -1.52
Ccdc88bQ4QRL3 Gm20619-201ENSMUST00000175814 2008 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
Ccdc88bQ4QRL3 A230085B16Rik-201ENSMUST00000209781 1856 ntBASIC5.57□□□□□ -1.52
Ccdc88bQ4QRL3 Gm2309-201ENSMUST00000149994 1941 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
Ccdc88bQ4QRL3 Krtap24-1-201ENSMUST00000052512 1571 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
Ccdc88bQ4QRL3 Vmn2r37-201ENSMUST00000072787 3081 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
Ccdc88bQ4QRL3 Gm43753-201ENSMUST00000196539 3309 ntBASIC5.57□□□□□ -1.52
Ccdc88bQ4QRL3 Mir711-201ENSMUST00000102188 82 ntBASIC5.57□□□□□ -1.52
Ccdc88bQ4QRL3 Gm24119-201ENSMUST00000103979 246 ntBASIC5.57□□□□□ -1.52
Ccdc88bQ4QRL3 2010106E10Rik-202ENSMUST00000113412 1276 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
Ccdc88bQ4QRL3 Gm2892-201ENSMUST00000145537 711 ntBASIC5.57□□□□□ -1.52
Ccdc88bQ4QRL3 Gm25373-201ENSMUST00000158156 115 ntBASIC5.57□□□□□ -1.52
Ccdc88bQ4QRL3 Gm18522-201ENSMUST00000173947 650 ntBASIC5.57□□□□□ -1.52
Ccdc88bQ4QRL3 Gm21244-201ENSMUST00000178447 684 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
Ccdc88bQ4QRL3 Rpl31-ps21-201ENSMUST00000181182 374 ntBASIC5.57□□□□□ -1.52
Ccdc88bQ4QRL3 Gm43227-201ENSMUST00000202239 677 ntBASIC5.57□□□□□ -1.52
Ccdc88bQ4QRL3 AC166830.1-201ENSMUST00000224201 533 ntBASIC5.57□□□□□ -1.52
Ccdc88bQ4QRL3 Gm37329-201ENSMUST00000192973 2057 ntBASIC5.57□□□□□ -1.52
Ccdc88bQ4QRL3 Olfr50-202ENSMUST00000216753 4531 ntAPPRIS P1 TSL 5 BASIC5.56□□□□□ -1.52
Ccdc88bQ4QRL3 Il13ra2-201ENSMUST00000033646 2281 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
Ccdc88bQ4QRL3 Vmn2r75-201ENSMUST00000167830 2562 ntAPPRIS P1 TSL 5 BASIC5.56□□□□□ -1.52
Ccdc88bQ4QRL3 Nap1l1-204ENSMUST00000218828 3934 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
Ccdc88bQ4QRL3 Hspb11-202ENSMUST00000106749 607 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
Ccdc88bQ4QRL3 Gm12268-201ENSMUST00000118398 442 ntBASIC5.56□□□□□ -1.52
Ccdc88bQ4QRL3 Gm13170-201ENSMUST00000119716 643 ntBASIC5.56□□□□□ -1.52
Ccdc88bQ4QRL3 Gm6762-201ENSMUST00000121769 289 ntBASIC5.56□□□□□ -1.52
Ccdc88bQ4QRL3 Gm15537-201ENSMUST00000126677 485 ntTSL 2 BASIC5.56□□□□□ -1.52
Ccdc88bQ4QRL3 Gm27445-201ENSMUST00000184484 72 ntBASIC5.56□□□□□ -1.52
Ccdc88bQ4QRL3 1700108N06Rik-201ENSMUST00000196572 681 ntTSL 5 BASIC5.56□□□□□ -1.52
Ccdc88bQ4QRL3 Gm45513-201ENSMUST00000210228 376 ntBASIC5.56□□□□□ -1.52
Ccdc88bQ4QRL3 AC154515.2-201ENSMUST00000226093 406 ntBASIC5.56□□□□□ -1.52
Ccdc88bQ4QRL3 Gm43875-201ENSMUST00000203319 2475 ntBASIC5.56□□□□□ -1.52
Ccdc88bQ4QRL3 9330159F19Rik-201ENSMUST00000092627 5681 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
Ccdc88bQ4QRL3 Olfr729-202ENSMUST00000213163 4283 ntAPPRIS P1 TSL 5 BASIC5.56□□□□□ -1.52
Ccdc88bQ4QRL3 Gm5346-201ENSMUST00000056023 2326 ntAPPRIS P1 BASIC5.56□□□□□ -1.52
Ccdc88bQ4QRL3 Olfr728-202ENSMUST00000213685 7087 ntAPPRIS P1 TSL 5 BASIC5.55□□□□□ -1.52
Ccdc88bQ4QRL3 Steap2-209ENSMUST00000164219 10089 ntAPPRIS P1 TSL 3 BASIC5.55□□□□□ -1.52
Ccdc88bQ4QRL3 Zfp322a-201ENSMUST00000050101 4844 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
Ccdc88bQ4QRL3 AC154368.2-201ENSMUST00000222334 1724 ntBASIC5.55□□□□□ -1.52
Ccdc88bQ4QRL3 Olfr1211-203ENSMUST00000213412 4173 ntAPPRIS P1 TSL 5 BASIC5.55□□□□□ -1.52
Ccdc88bQ4QRL3 Gm14288-201ENSMUST00000109020 3438 ntAPPRIS P2 TSL 1 (best) BASIC5.55□□□□□ -1.52
Ccdc88bQ4QRL3 Gm9972-201ENSMUST00000069051 1533 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
Ccdc88bQ4QRL3 Trav8n-2-201ENSMUST00000103632 408 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
Ccdc88bQ4QRL3 Gm22674-201ENSMUST00000104413 131 ntBASIC5.55□□□□□ -1.52
Ccdc88bQ4QRL3 Gm14926-201ENSMUST00000120650 508 ntBASIC5.55□□□□□ -1.52
Ccdc88bQ4QRL3 Gm13411-201ENSMUST00000149429 414 ntTSL 2 BASIC5.55□□□□□ -1.52
Ccdc88bQ4QRL3 Gm17732-201ENSMUST00000163259 821 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
Ccdc88bQ4QRL3 Gm44594-201ENSMUST00000208982 407 ntBASIC5.55□□□□□ -1.52
Ccdc88bQ4QRL3 Gm17917-201ENSMUST00000218561 953 ntBASIC5.55□□□□□ -1.52
Ccdc88bQ4QRL3 AC129541.1-201ENSMUST00000226940 523 ntBASIC5.55□□□□□ -1.52
Ccdc88bQ4QRL3 Defb9-201ENSMUST00000057076 310 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
Ccdc88bQ4QRL3 Tas2r136-201ENSMUST00000065532 984 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
Ccdc88bQ4QRL3 2410024N13Rik-201ENSMUST00000090704 669 ntBASIC5.55□□□□□ -1.52
Ccdc88bQ4QRL3 Vmn1r14-205ENSMUST00000227884 7542 ntAPPRIS P2 BASIC5.55□□□□□ -1.52
Ccdc88bQ4QRL3 Syne2-201ENSMUST00000044217 21690 ntAPPRIS P2 TSL 5 BASIC5.55□□□□□ -1.52
Ccdc88bQ4QRL3 Gm45066-201ENSMUST00000207528 2551 ntBASIC5.54□□□□□ -1.52
Ccdc88bQ4QRL3 Gm25485-201ENSMUST00000104120 132 ntBASIC5.54□□□□□ -1.52
Ccdc88bQ4QRL3 Gstm5-202ENSMUST00000167387 599 ntTSL 5 BASIC5.54□□□□□ -1.52
Ccdc88bQ4QRL3 Gm5527-201ENSMUST00000179821 642 ntBASIC5.54□□□□□ -1.52
Ccdc88bQ4QRL3 4933440J02Rik-201ENSMUST00000181547 1144 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
Ccdc88bQ4QRL3 Gm32340-201ENSMUST00000192883 259 ntBASIC5.54□□□□□ -1.52
Ccdc88bQ4QRL3 Gm3933-201ENSMUST00000195391 439 ntBASIC5.54□□□□□ -1.52
Ccdc88bQ4QRL3 Gm19104-201ENSMUST00000198392 679 ntBASIC5.54□□□□□ -1.52
Ccdc88bQ4QRL3 Olfr1315-ps1-201ENSMUST00000207542 1230 ntAPPRIS P5 TSL 5 BASIC5.54□□□□□ -1.52
Ccdc88bQ4QRL3 AC157572.3-201ENSMUST00000227288 303 ntBASIC5.54□□□□□ -1.52
Ccdc88bQ4QRL3 Olfr266-201ENSMUST00000059486 1027 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
Ccdc88bQ4QRL3 Olfr804-201ENSMUST00000077312 945 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
Ccdc88bQ4QRL3 Gm3665-201ENSMUST00000177214 2461 ntBASIC5.54□□□□□ -1.52
Ccdc88bQ4QRL3 Gm43466-201ENSMUST00000197836 5214 ntBASIC5.53□□□□□ -1.52
Ccdc88bQ4QRL3 Gm42455-201ENSMUST00000199761 2736 ntBASIC5.53□□□□□ -1.52
Ccdc88bQ4QRL3 Gm8840-201ENSMUST00000122454 386 ntBASIC5.53□□□□□ -1.52
Ccdc88bQ4QRL3 Gm25392-201ENSMUST00000157335 297 ntBASIC5.53□□□□□ -1.52
Ccdc88bQ4QRL3 Mir5128-201ENSMUST00000175217 84 ntBASIC5.53□□□□□ -1.52
Ccdc88bQ4QRL3 Gm26988-201ENSMUST00000183296 945 ntBASIC5.53□□□□□ -1.52
Ccdc88bQ4QRL3 Gtpbp4-ps4-201ENSMUST00000184813 258 ntBASIC5.53□□□□□ -1.52
Ccdc88bQ4QRL3 Gm8282-201ENSMUST00000187559 483 ntBASIC5.53□□□□□ -1.52
Ccdc88bQ4QRL3 Ms4a4a-201ENSMUST00000188995 836 ntAPPRIS P1 TSL 5 BASIC5.53□□□□□ -1.52
Ccdc88bQ4QRL3 4930533P14Rik-201ENSMUST00000189056 583 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
Retrieved 100 of 76,532 protein–RNA pairs in 80.6 ms