Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Gm22814-201ENSMUST00000157452 104 ntBASIC6.34□□□□□ -1.39
Rnf40Q3U319 Zakit-201ENSMUST00000157677 308 ntBASIC6.34□□□□□ -1.39
Rnf40Q3U319 Gm10319-202ENSMUST00000159439 846 ntBASIC6.34□□□□□ -1.39
Rnf40Q3U319 Gm17206-201ENSMUST00000168123 577 ntTSL 5 BASIC6.34□□□□□ -1.39
Rnf40Q3U319 Speer6-ps1-201ENSMUST00000168736 545 ntBASIC6.34□□□□□ -1.39
Rnf40Q3U319 Gm5218-201ENSMUST00000172270 465 ntAPPRIS P1 BASIC6.34□□□□□ -1.39
Rnf40Q3U319 Gm26179-201ENSMUST00000177723 132 ntBASIC6.34□□□□□ -1.39
Rnf40Q3U319 Mir6769b-201ENSMUST00000184793 60 ntBASIC6.34□□□□□ -1.39
Rnf40Q3U319 Gm29369-201ENSMUST00000190674 615 ntBASIC6.34□□□□□ -1.39
Rnf40Q3U319 Gm28288-201ENSMUST00000191019 214 ntBASIC6.34□□□□□ -1.39
Rnf40Q3U319 Gm42865-201ENSMUST00000197981 613 ntTSL 3 BASIC6.34□□□□□ -1.39
Rnf40Q3U319 Shisa5-214ENSMUST00000198708 771 ntTSL 5 BASIC6.34□□□□□ -1.39
Rnf40Q3U319 Gm42804-201ENSMUST00000199701 178 ntBASIC6.34□□□□□ -1.39
Rnf40Q3U319 Gm3549-201ENSMUST00000203873 794 ntBASIC6.34□□□□□ -1.39
Rnf40Q3U319 Gm44085-201ENSMUST00000205056 372 ntTSL 3 BASIC6.34□□□□□ -1.39
Rnf40Q3U319 Aldoa-ps4-201ENSMUST00000216332 753 ntBASIC6.34□□□□□ -1.39
Rnf40Q3U319 AC154994.1-201ENSMUST00000217395 302 ntBASIC6.34□□□□□ -1.39
Rnf40Q3U319 Gm45941-202ENSMUST00000223144 389 ntTSL 2 BASIC6.34□□□□□ -1.39
Rnf40Q3U319 Gcnt2-204ENSMUST00000223570 335 ntBASIC6.34□□□□□ -1.39
Rnf40Q3U319 AC101945.1-201ENSMUST00000226734 466 ntBASIC6.34□□□□□ -1.39
Rnf40Q3U319 n-R5s65-201ENSMUST00000082614 117 ntBASIC6.34□□□□□ -1.39
Rnf40Q3U319 Gm13304-201ENSMUST00000098123 837 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
Rnf40Q3U319 Olfr1090-201ENSMUST00000099875 942 ntAPPRIS P1 BASIC6.34□□□□□ -1.39
Rnf40Q3U319 Muc15-203ENSMUST00000111017 3095 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
Rnf40Q3U319 Gm35842-201ENSMUST00000207859 4464 ntTSL 5 BASIC6.34□□□□□ -1.39
Rnf40Q3U319 AC153494.1-201ENSMUST00000218664 3041 ntBASIC6.34□□□□□ -1.39
Rnf40Q3U319 Cfap70-203ENSMUST00000056073 3615 ntAPPRIS P4 TSL 1 (best) BASIC6.34□□□□□ -1.39
Rnf40Q3U319 Gm42507-201ENSMUST00000201187 2555 ntBASIC6.34□□□□□ -1.39
Rnf40Q3U319 Tmem207-201ENSMUST00000165687 1538 ntAPPRIS P1 TSL 2 BASIC6.34□□□□□ -1.39
Rnf40Q3U319 AC151971.5-202ENSMUST00000215946 3188 ntTSL 5 BASIC6.34□□□□□ -1.4
Rnf40Q3U319 6430511E19Rik-201ENSMUST00000192772 3835 ntBASIC6.34□□□□□ -1.4
Rnf40Q3U319 Ankrd34c-201ENSMUST00000060700 5457 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.4
Rnf40Q3U319 Lypd6-205ENSMUST00000169232 3499 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.4
Rnf40Q3U319 Olfr736-204ENSMUST00000215227 2485 ntAPPRIS P1 TSL 5 BASIC6.34□□□□□ -1.4
Rnf40Q3U319 Gabrb1-201ENSMUST00000031122 13737 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
Rnf40Q3U319 Mug2-201ENSMUST00000081777 4579 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
Rnf40Q3U319 Olfr668-202ENSMUST00000215359 3613 ntAPPRIS P1 TSL 5 BASIC6.33□□□□□ -1.4
Rnf40Q3U319 Olfr1058-202ENSMUST00000213998 1710 ntAPPRIS P1 TSL 5 BASIC6.33□□□□□ -1.4
Rnf40Q3U319 Gm37897-201ENSMUST00000192613 3561 ntBASIC6.33□□□□□ -1.4
Rnf40Q3U319 Pfkfb2-202ENSMUST00000066863 4425 ntAPPRIS P3 TSL 1 (best) BASIC6.33□□□□□ -1.4
Rnf40Q3U319 Gsdmc4-201ENSMUST00000063530 1988 ntAPPRIS P1 TSL 5 BASIC6.33□□□□□ -1.4
Rnf40Q3U319 Olfr1031-202ENSMUST00000216807 1946 ntAPPRIS P1 TSL 5 BASIC6.33□□□□□ -1.4
Rnf40Q3U319 Klhl13-203ENSMUST00000115316 3064 ntTSL 5 BASIC6.33□□□□□ -1.4
Rnf40Q3U319 Rabgap1-203ENSMUST00000112920 4847 ntAPPRIS P4 TSL 5 BASIC6.33□□□□□ -1.4
Rnf40Q3U319 Fap-202ENSMUST00000102732 2751 ntAPPRIS P2 TSL 1 (best) BASIC6.33□□□□□ -1.4
Rnf40Q3U319 Gm33378-201ENSMUST00000219831 2758 ntBASIC6.33□□□□□ -1.4
Rnf40Q3U319 Enox2-209ENSMUST00000167659 3632 ntTSL 5 BASIC6.33□□□□□ -1.4
Rnf40Q3U319 Gm22231-201ENSMUST00000101027 73 ntBASIC6.33□□□□□ -1.4
Rnf40Q3U319 Mir541-201ENSMUST00000102097 90 ntBASIC6.33□□□□□ -1.4
Rnf40Q3U319 Gm24869-201ENSMUST00000104072 128 ntBASIC6.33□□□□□ -1.4
Rnf40Q3U319 Gm23294-201ENSMUST00000104150 164 ntBASIC6.33□□□□□ -1.4
Rnf40Q3U319 Tmco2-201ENSMUST00000106268 719 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
Rnf40Q3U319 Gnrh1-201ENSMUST00000111095 486 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
Rnf40Q3U319 Gm12417-201ENSMUST00000119153 403 ntBASIC6.33□□□□□ -1.4
Rnf40Q3U319 Gm25966-201ENSMUST00000157169 117 ntBASIC6.33□□□□□ -1.4
Rnf40Q3U319 Gm26022-201ENSMUST00000158663 108 ntBASIC6.33□□□□□ -1.4
Rnf40Q3U319 Gm9320-201ENSMUST00000184151 473 ntBASIC6.33□□□□□ -1.4
Rnf40Q3U319 Gm28303-201ENSMUST00000185642 747 ntBASIC6.33□□□□□ -1.4
Rnf40Q3U319 Gm28636-201ENSMUST00000186353 696 ntBASIC6.33□□□□□ -1.4
Rnf40Q3U319 Trav17-202ENSMUST00000186545 338 ntAPPRIS ALT2 BASIC6.33□□□□□ -1.4
Rnf40Q3U319 Stk-ps2-204ENSMUST00000187808 616 ntBASIC6.33□□□□□ -1.4
Rnf40Q3U319 Gm29352-201ENSMUST00000188054 544 ntBASIC6.33□□□□□ -1.4
Rnf40Q3U319 Gm28272-201ENSMUST00000189512 696 ntBASIC6.33□□□□□ -1.4
Rnf40Q3U319 Gm7837-201ENSMUST00000190873 412 ntBASIC6.33□□□□□ -1.4
Rnf40Q3U319 Gm4322-201ENSMUST00000191094 336 ntBASIC6.33□□□□□ -1.4
Rnf40Q3U319 Gm8939-201ENSMUST00000192577 964 ntBASIC6.33□□□□□ -1.4
Rnf40Q3U319 Gm32340-201ENSMUST00000192883 259 ntBASIC6.33□□□□□ -1.4
Rnf40Q3U319 Gm5552-201ENSMUST00000197149 515 ntBASIC6.33□□□□□ -1.4
Rnf40Q3U319 Ndufa4-204ENSMUST00000204714 452 ntAPPRIS P1 TSL 3 BASIC6.33□□□□□ -1.4
Rnf40Q3U319 AC158633.1-201ENSMUST00000219892 649 ntBASIC6.33□□□□□ -1.4
Rnf40Q3U319 AC165092.2-201ENSMUST00000224681 368 ntBASIC6.33□□□□□ -1.4
Rnf40Q3U319 AC125405.1-201ENSMUST00000226406 589 ntBASIC6.33□□□□□ -1.4
Rnf40Q3U319 Gm23686-201ENSMUST00000083241 164 ntBASIC6.33□□□□□ -1.4
Rnf40Q3U319 Mir138-2-201ENSMUST00000083578 71 ntBASIC6.33□□□□□ -1.4
Rnf40Q3U319 Casp8ap2-205ENSMUST00000178925 6557 ntAPPRIS P2 TSL 5 BASIC6.33□□□□□ -1.4
Rnf40Q3U319 Trps1-203ENSMUST00000183421 3446 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
Rnf40Q3U319 Pdgfd-203ENSMUST00000214892 2862 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
Rnf40Q3U319 Map2-201ENSMUST00000024639 5195 ntTSL 5 BASIC6.33□□□□□ -1.4
Rnf40Q3U319 Ppp2r3a-201ENSMUST00000066773 4461 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
Rnf40Q3U319 Txndc9-201ENSMUST00000162031 3381 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
Rnf40Q3U319 A230103L15Rik-201ENSMUST00000207198 3872 ntBASIC6.32□□□□□ -1.4
Rnf40Q3U319 Olfr365-203ENSMUST00000218602 5374 ntAPPRIS P1 TSL 5 BASIC6.32□□□□□ -1.4
Rnf40Q3U319 Olfr741-203ENSMUST00000213903 3305 ntAPPRIS P1 TSL 5 BASIC6.32□□□□□ -1.4
Rnf40Q3U319 Gabra6-202ENSMUST00000109286 1554 ntAPPRIS ALT2 TSL 5 BASIC6.32□□□□□ -1.4
Rnf40Q3U319 Gm20125-201ENSMUST00000185722 3201 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
Rnf40Q3U319 Enox2-201ENSMUST00000033437 3170 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
Rnf40Q3U319 Cr2-208ENSMUST00000195120 6212 ntTSL 5 BASIC6.32□□□□□ -1.4
Rnf40Q3U319 Trmt10a-206ENSMUST00000162864 4064 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
Rnf40Q3U319 Igkv6-32-201ENSMUST00000103377 366 ntAPPRIS P1 BASIC6.32□□□□□ -1.4
Rnf40Q3U319 Gm24120-201ENSMUST00000103978 129 ntBASIC6.32□□□□□ -1.4
Rnf40Q3U319 Gm16224-201ENSMUST00000127711 412 ntTSL 3 BASIC6.32□□□□□ -1.4
Rnf40Q3U319 Gm8715-201ENSMUST00000162728 531 ntBASIC6.32□□□□□ -1.4
Rnf40Q3U319 Gm4675-201ENSMUST00000163396 502 ntTSL 3 BASIC6.32□□□□□ -1.4
Rnf40Q3U319 Gm21746-201ENSMUST00000177612 543 ntAPPRIS P1 BASIC6.32□□□□□ -1.4
Rnf40Q3U319 Gm25360-201ENSMUST00000178786 191 ntBASIC6.32□□□□□ -1.4
Rnf40Q3U319 Gm17786-201ENSMUST00000182000 427 ntBASIC6.32□□□□□ -1.4
Rnf40Q3U319 Gm27185-201ENSMUST00000184296 247 ntBASIC6.32□□□□□ -1.4
Rnf40Q3U319 Gm27596-201ENSMUST00000185061 83 ntBASIC6.32□□□□□ -1.4
Rnf40Q3U319 Gm28219-201ENSMUST00000185452 696 ntBASIC6.32□□□□□ -1.4
Rnf40Q3U319 Gm29244-201ENSMUST00000185825 696 ntBASIC6.32□□□□□ -1.4
Retrieved 100 of 76,532 protein–RNA pairs in 71.4 ms