Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Gm12564-201ENSMUST00000119860 321 ntBASIC6.36□□□□□ -1.39
Rnf40Q3U319 Rhox3b-ps-201ENSMUST00000121045 868 ntBASIC6.36□□□□□ -1.39
Rnf40Q3U319 Gm14101-201ENSMUST00000121502 473 ntBASIC6.36□□□□□ -1.39
Rnf40Q3U319 Zfp783-203ENSMUST00000130463 537 ntTSL 2 BASIC6.36□□□□□ -1.39
Rnf40Q3U319 Gm23077-201ENSMUST00000157854 116 ntBASIC6.36□□□□□ -1.39
Rnf40Q3U319 Mir1945-201ENSMUST00000157919 78 ntBASIC6.36□□□□□ -1.39
Rnf40Q3U319 Gm23894-201ENSMUST00000158107 313 ntBASIC6.36□□□□□ -1.39
Rnf40Q3U319 Gm25654-201ENSMUST00000158467 88 ntBASIC6.36□□□□□ -1.39
Rnf40Q3U319 Skint1-205ENSMUST00000162885 603 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
Rnf40Q3U319 2210418O10Rik-204ENSMUST00000166464 750 ntBASIC6.36□□□□□ -1.39
Rnf40Q3U319 Gm23810-201ENSMUST00000175150 74 ntBASIC6.36□□□□□ -1.39
Rnf40Q3U319 Gm20690-201ENSMUST00000177341 315 ntBASIC6.36□□□□□ -1.39
Rnf40Q3U319 Gm16378-201ENSMUST00000179168 342 ntBASIC6.36□□□□□ -1.39
Rnf40Q3U319 Rpl9-ps1-202ENSMUST00000182502 576 ntAPPRIS P1 BASIC6.36□□□□□ -1.39
Rnf40Q3U319 Gm11983-202ENSMUST00000184940 318 ntAPPRIS P1 BASIC6.36□□□□□ -1.39
Rnf40Q3U319 Gm29422-201ENSMUST00000188062 694 ntBASIC6.36□□□□□ -1.39
Rnf40Q3U319 Gm29119-201ENSMUST00000189973 696 ntBASIC6.36□□□□□ -1.39
Rnf40Q3U319 Gm38373-201ENSMUST00000192042 288 ntBASIC6.36□□□□□ -1.39
Rnf40Q3U319 Ighv1-30-201ENSMUST00000194082 349 ntBASIC6.36□□□□□ -1.39
Rnf40Q3U319 Gm44147-201ENSMUST00000204658 94 ntBASIC6.36□□□□□ -1.39
Rnf40Q3U319 Gm44817-201ENSMUST00000205416 453 ntBASIC6.36□□□□□ -1.39
Rnf40Q3U319 Gm44825-201ENSMUST00000207557 150 ntBASIC6.36□□□□□ -1.39
Rnf40Q3U319 Gm44598-201ENSMUST00000207566 150 ntBASIC6.36□□□□□ -1.39
Rnf40Q3U319 Gm17988-201ENSMUST00000208796 535 ntBASIC6.36□□□□□ -1.39
Rnf40Q3U319 Gm18904-201ENSMUST00000218756 329 ntBASIC6.36□□□□□ -1.39
Rnf40Q3U319 1700020D12Rik-201ENSMUST00000221140 426 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
Rnf40Q3U319 AC170999.2-201ENSMUST00000226223 264 ntBASIC6.36□□□□□ -1.39
Rnf40Q3U319 2210407C18Rik-201ENSMUST00000048801 876 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
Rnf40Q3U319 Gm5265-201ENSMUST00000076828 342 ntBASIC6.36□□□□□ -1.39
Rnf40Q3U319 n-R5s180-201ENSMUST00000082770 106 ntBASIC6.36□□□□□ -1.39
Rnf40Q3U319 n-R5s29-201ENSMUST00000082836 119 ntBASIC6.36□□□□□ -1.39
Rnf40Q3U319 Sprr2a3-201ENSMUST00000090872 682 ntAPPRIS P1 BASIC6.36□□□□□ -1.39
Rnf40Q3U319 Defa25-201ENSMUST00000095425 279 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
Rnf40Q3U319 Mpeg1-201ENSMUST00000081035 4335 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
Rnf40Q3U319 Ahnak-202ENSMUST00000092956 18099 ntAPPRIS P3 TSL 1 (best) BASIC6.36□□□□□ -1.39
Rnf40Q3U319 Gm14910-201ENSMUST00000121037 1805 ntBASIC6.36□□□□□ -1.39
Rnf40Q3U319 AC124579.1-201ENSMUST00000223468 2520 ntBASIC6.36□□□□□ -1.39
Rnf40Q3U319 Gabra6-201ENSMUST00000020703 2436 ntAPPRIS P3 TSL 1 (best) BASIC6.36□□□□□ -1.39
Rnf40Q3U319 Zfp113-201ENSMUST00000049393 6470 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
Rnf40Q3U319 Dnal1-202ENSMUST00000123491 5727 ntAPPRIS P1 TSL 2 BASIC6.36□□□□□ -1.39
Rnf40Q3U319 Olfr273-202ENSMUST00000107670 4796 ntAPPRIS P1 TSL 5 BASIC6.35□□□□□ -1.39
Rnf40Q3U319 Olfr963-202ENSMUST00000215649 2203 ntAPPRIS P1 TSL 5 BASIC6.35□□□□□ -1.39
Rnf40Q3U319 Gm10259-201ENSMUST00000091289 1590 ntBASIC6.35□□□□□ -1.39
Rnf40Q3U319 Sgip1-202ENSMUST00000072481 3915 ntAPPRIS ALT2 TSL 1 (best) BASIC6.35□□□□□ -1.39
Rnf40Q3U319 AC124561.2-201ENSMUST00000226657 1973 ntBASIC6.35□□□□□ -1.39
Rnf40Q3U319 A630031M04Rik-201ENSMUST00000146587 3568 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
Rnf40Q3U319 Qser1-201ENSMUST00000117237 8973 ntAPPRIS P1 TSL 5 BASIC6.35□□□□□ -1.39
Rnf40Q3U319 Gm20750-201ENSMUST00000194274 3515 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
Rnf40Q3U319 Vmn1r57-202ENSMUST00000227798 2409 ntAPPRIS P1 BASIC6.35□□□□□ -1.39
Rnf40Q3U319 Trbv12-1-201ENSMUST00000103267 389 ntAPPRIS P1 BASIC6.35□□□□□ -1.39
Rnf40Q3U319 Gm25311-201ENSMUST00000104136 132 ntBASIC6.35□□□□□ -1.39
Rnf40Q3U319 Gm24519-201ENSMUST00000104507 132 ntBASIC6.35□□□□□ -1.39
Rnf40Q3U319 Gm6760-201ENSMUST00000114682 604 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
Rnf40Q3U319 Gm13193-201ENSMUST00000117275 225 ntBASIC6.35□□□□□ -1.39
Rnf40Q3U319 Gm12635-201ENSMUST00000117285 752 ntBASIC6.35□□□□□ -1.39
Rnf40Q3U319 Gm7657-201ENSMUST00000118851 666 ntBASIC6.35□□□□□ -1.39
Rnf40Q3U319 Gm12852-201ENSMUST00000119478 719 ntBASIC6.35□□□□□ -1.39
Rnf40Q3U319 Gm13677-201ENSMUST00000120739 595 ntBASIC6.35□□□□□ -1.39
Rnf40Q3U319 Gm11849-201ENSMUST00000121293 261 ntBASIC6.35□□□□□ -1.39
Rnf40Q3U319 Gm11250-201ENSMUST00000142137 306 ntTSL 5 BASIC6.35□□□□□ -1.39
Rnf40Q3U319 Gm24442-201ENSMUST00000157238 327 ntBASIC6.35□□□□□ -1.39
Rnf40Q3U319 Gm25387-201ENSMUST00000157813 132 ntBASIC6.35□□□□□ -1.39
Rnf40Q3U319 Gm25223-201ENSMUST00000158200 110 ntBASIC6.35□□□□□ -1.39
Rnf40Q3U319 Gm25051-201ENSMUST00000158602 249 ntBASIC6.35□□□□□ -1.39
Rnf40Q3U319 AC122858.3-202ENSMUST00000161721 433 ntTSL 5 BASIC6.35□□□□□ -1.39
Rnf40Q3U319 Gm5456-201ENSMUST00000170706 844 ntBASIC6.35□□□□□ -1.39
Rnf40Q3U319 Tshb-202ENSMUST00000170856 552 ntAPPRIS P1 TSL 5 BASIC6.35□□□□□ -1.39
Rnf40Q3U319 Vmn2r-ps6-201ENSMUST00000176317 1101 ntBASIC6.35□□□□□ -1.39
Rnf40Q3U319 Gm9999-202ENSMUST00000185832 335 ntAPPRIS ALT2 TSL 1 (best) BASIC6.35□□□□□ -1.39
Rnf40Q3U319 Gm29597-201ENSMUST00000188035 308 ntBASIC6.35□□□□□ -1.39
Rnf40Q3U319 Gm37838-201ENSMUST00000194464 312 ntBASIC6.35□□□□□ -1.39
Rnf40Q3U319 Gm42708-201ENSMUST00000196332 905 ntBASIC6.35□□□□□ -1.39
Rnf40Q3U319 Gm43749-201ENSMUST00000199345 352 ntBASIC6.35□□□□□ -1.39
Rnf40Q3U319 Gm7452-201ENSMUST00000200764 788 ntBASIC6.35□□□□□ -1.39
Rnf40Q3U319 Gm8288-201ENSMUST00000223406 593 ntBASIC6.35□□□□□ -1.39
Rnf40Q3U319 Dpm2-201ENSMUST00000028151 869 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
Rnf40Q3U319 Olfr743-201ENSMUST00000071294 936 ntAPPRIS P1 BASIC6.35□□□□□ -1.39
Rnf40Q3U319 Gm24045-201ENSMUST00000083113 98 ntBASIC6.35□□□□□ -1.39
Rnf40Q3U319 Glyat-202ENSMUST00000119960 3296 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
Rnf40Q3U319 Gm42496-201ENSMUST00000197976 3241 ntBASIC6.35□□□□□ -1.39
Rnf40Q3U319 Gm42992-201ENSMUST00000197043 6836 ntBASIC6.35□□□□□ -1.39
Rnf40Q3U319 Tom1l1-202ENSMUST00000107867 2439 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
Rnf40Q3U319 Gm43333-201ENSMUST00000198340 2262 ntBASIC6.34□□□□□ -1.39
Rnf40Q3U319 Olfr235-204ENSMUST00000214613 2217 ntAPPRIS P1 TSL 3 BASIC6.34□□□□□ -1.39
Rnf40Q3U319 Gm10521-201ENSMUST00000097466 2574 ntAPPRIS P1 BASIC6.34□□□□□ -1.39
Rnf40Q3U319 Pramel3-201ENSMUST00000113176 3673 ntAPPRIS P2 TSL 1 (best) BASIC6.34□□□□□ -1.39
Rnf40Q3U319 Olfr1180-203ENSMUST00000217320 2107 ntAPPRIS P1 TSL 5 BASIC6.34□□□□□ -1.39
Rnf40Q3U319 Serpinb9b-201ENSMUST00000006392 3253 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
Rnf40Q3U319 Tbx22-204ENSMUST00000168403 1715 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
Rnf40Q3U319 9430037G07Rik-201ENSMUST00000180723 3177 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
Rnf40Q3U319 Gm13101-201ENSMUST00000105763 1678 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
Rnf40Q3U319 Atad2-208ENSMUST00000228783 3472 ntAPPRIS ALT2 BASIC6.34□□□□□ -1.39
Rnf40Q3U319 Gm13664-201ENSMUST00000117304 345 ntBASIC6.34□□□□□ -1.39
Rnf40Q3U319 Gm12285-201ENSMUST00000117347 233 ntBASIC6.34□□□□□ -1.39
Rnf40Q3U319 Gm13239-201ENSMUST00000119920 637 ntBASIC6.34□□□□□ -1.39
Rnf40Q3U319 Gm11761-201ENSMUST00000121392 445 ntBASIC6.34□□□□□ -1.39
Rnf40Q3U319 Gm15743-201ENSMUST00000129645 242 ntTSL 3 BASIC6.34□□□□□ -1.39
Rnf40Q3U319 Ssxb6-201ENSMUST00000138642 518 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
Rnf40Q3U319 Gm14747-201ENSMUST00000149888 984 ntBASIC6.34□□□□□ -1.39
Rnf40Q3U319 Gm11419-201ENSMUST00000150772 683 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
Retrieved 100 of 76,532 protein–RNA pairs in 82.4 ms