Protein–RNA interactions for Protein: Q4QRL3

Ccdc88b, Coiled-coil domain-containing protein 88B, mousemouse

Predictions only

Length 1,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88bQ4QRL3 Snord7-201ENSMUST00000083781 97 ntBASIC5.69□□□□□ -1.5
Ccdc88bQ4QRL3 AC132336.1-201ENSMUST00000222844 1740 ntBASIC5.69□□□□□ -1.5
Ccdc88bQ4QRL3 Serpinb7-201ENSMUST00000086690 1887 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
Ccdc88bQ4QRL3 Vmn1r184-206ENSMUST00000228145 5888 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
Ccdc88bQ4QRL3 AC167250.1-201ENSMUST00000213739 3813 ntBASIC5.68□□□□□ -1.5
Ccdc88bQ4QRL3 Trav14d-2-201ENSMUST00000103597 276 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
Ccdc88bQ4QRL3 Trav14n-2-201ENSMUST00000103623 276 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
Ccdc88bQ4QRL3 Gm13865-201ENSMUST00000120957 865 ntBASIC5.68□□□□□ -1.5
Ccdc88bQ4QRL3 Pfdn4-205ENSMUST00000136839 452 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
Ccdc88bQ4QRL3 Gm11640-201ENSMUST00000155987 272 ntTSL 3 BASIC5.68□□□□□ -1.5
Ccdc88bQ4QRL3 Gm24819-201ENSMUST00000175094 166 ntBASIC5.68□□□□□ -1.5
Ccdc88bQ4QRL3 Trav14-2-202ENSMUST00000184874 276 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
Ccdc88bQ4QRL3 Gm8747-201ENSMUST00000195392 751 ntBASIC5.68□□□□□ -1.5
Ccdc88bQ4QRL3 Gm44256-201ENSMUST00000203304 335 ntBASIC5.68□□□□□ -1.5
Ccdc88bQ4QRL3 AL669916.5-201ENSMUST00000214874 361 ntBASIC5.68□□□□□ -1.5
Ccdc88bQ4QRL3 Gm19987-201ENSMUST00000216339 499 ntBASIC5.68□□□□□ -1.5
Ccdc88bQ4QRL3 AC160931.2-201ENSMUST00000221445 351 ntBASIC5.68□□□□□ -1.5
Ccdc88bQ4QRL3 AC133517.1-203ENSMUST00000225570 390 ntBASIC5.68□□□□□ -1.5
Ccdc88bQ4QRL3 AC106830.1-201ENSMUST00000228032 1003 ntBASIC5.68□□□□□ -1.5
Ccdc88bQ4QRL3 Vaultrc5-201ENSMUST00000083211 143 ntBASIC5.68□□□□□ -1.5
Ccdc88bQ4QRL3 Vmn2r82-201ENSMUST00000170596 3045 ntAPPRIS P1 TSL 5 BASIC5.68□□□□□ -1.5
Ccdc88bQ4QRL3 Olfr665-204ENSMUST00000216971 3248 ntAPPRIS P1 TSL 5 BASIC5.68□□□□□ -1.5
Ccdc88bQ4QRL3 Zfp534-201ENSMUST00000117638 2885 ntAPPRIS P1 TSL 2 BASIC5.67□□□□□ -1.5
Ccdc88bQ4QRL3 Gm19619-201ENSMUST00000200707 3201 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
Ccdc88bQ4QRL3 Serpinb6c-201ENSMUST00000110273 1325 ntAPPRIS P1 TSL 5 BASIC5.67□□□□□ -1.5
Ccdc88bQ4QRL3 Gm43705-201ENSMUST00000195958 3717 ntBASIC5.67□□□□□ -1.5
Ccdc88bQ4QRL3 Sycp2-201ENSMUST00000081134 5717 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
Ccdc88bQ4QRL3 Trbv13-1-201ENSMUST00000103268 334 ntAPPRIS ALT2 BASIC5.67□□□□□ -1.5
Ccdc88bQ4QRL3 Gm14581-201ENSMUST00000121726 198 ntBASIC5.67□□□□□ -1.5
Ccdc88bQ4QRL3 Gm8600-201ENSMUST00000186320 905 ntBASIC5.67□□□□□ -1.5
Ccdc88bQ4QRL3 Gm19039-201ENSMUST00000204363 575 ntBASIC5.67□□□□□ -1.5
Ccdc88bQ4QRL3 Olfr206-202ENSMUST00000207927 1122 ntAPPRIS P1 TSL 5 BASIC5.67□□□□□ -1.5
Ccdc88bQ4QRL3 CT025680.1-201ENSMUST00000217375 375 ntBASIC5.67□□□□□ -1.5
Ccdc88bQ4QRL3 Creg1-201ENSMUST00000040298 425 ntTSL 3 BASIC5.67□□□□□ -1.5
Ccdc88bQ4QRL3 Vmn1r43-204ENSMUST00000226983 12805 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
Ccdc88bQ4QRL3 Vmn1r13-202ENSMUST00000226892 5156 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
Ccdc88bQ4QRL3 Olfr1404-202ENSMUST00000216556 3305 ntAPPRIS P1 TSL 5 BASIC5.66□□□□□ -1.5
Ccdc88bQ4QRL3 Ccnb3-201ENSMUST00000056725 4475 ntAPPRIS P1 TSL 5 BASIC5.66□□□□□ -1.5
Ccdc88bQ4QRL3 Btbd35f5-201ENSMUST00000179538 1950 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
Ccdc88bQ4QRL3 Nfia-204ENSMUST00000107057 8913 ntTSL 5 BASIC5.66□□□□□ -1.5
Ccdc88bQ4QRL3 Olfr535-207ENSMUST00000217235 5186 ntAPPRIS P1 TSL 5 BASIC5.66□□□□□ -1.5
Ccdc88bQ4QRL3 n-R5s31-201ENSMUST00000104162 110 ntBASIC5.66□□□□□ -1.5
Ccdc88bQ4QRL3 Gm14647-201ENSMUST00000119392 680 ntBASIC5.66□□□□□ -1.5
Ccdc88bQ4QRL3 Gm14093-201ENSMUST00000145579 364 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
Ccdc88bQ4QRL3 Gm23668-201ENSMUST00000157465 111 ntBASIC5.66□□□□□ -1.5
Ccdc88bQ4QRL3 Gm45031-201ENSMUST00000206800 288 ntBASIC5.66□□□□□ -1.5
Ccdc88bQ4QRL3 Phf11c-201ENSMUST00000166912 3459 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
Ccdc88bQ4QRL3 Gm44625-201ENSMUST00000207838 1561 ntBASIC5.66□□□□□ -1.5
Ccdc88bQ4QRL3 Olfr502-202ENSMUST00000216919 3282 ntAPPRIS P1 TSL 5 BASIC5.66□□□□□ -1.5
Ccdc88bQ4QRL3 Gm37006-201ENSMUST00000195253 2674 ntBASIC5.66□□□□□ -1.5
Ccdc88bQ4QRL3 Gm37363-201ENSMUST00000192336 2233 ntBASIC5.66□□□□□ -1.5
Ccdc88bQ4QRL3 Vmn2r107-201ENSMUST00000042090 2586 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.5
Ccdc88bQ4QRL3 AC160931.3-201ENSMUST00000222111 2267 ntBASIC5.65□□□□□ -1.5
Ccdc88bQ4QRL3 Trbv16-201ENSMUST00000103274 398 ntAPPRIS P1 BASIC5.65□□□□□ -1.5
Ccdc88bQ4QRL3 Olfr1235-ps1-201ENSMUST00000117898 314 ntBASIC5.65□□□□□ -1.5
Ccdc88bQ4QRL3 Gm9208-201ENSMUST00000120468 948 ntBASIC5.65□□□□□ -1.5
Ccdc88bQ4QRL3 Gm16101-201ENSMUST00000160695 430 ntBASIC5.65□□□□□ -1.5
Ccdc88bQ4QRL3 Vmn2r-ps126-201ENSMUST00000176711 1149 ntBASIC5.65□□□□□ -1.5
Ccdc88bQ4QRL3 Cldn34c2-201ENSMUST00000178457 702 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.5
Ccdc88bQ4QRL3 Gm37085-201ENSMUST00000193780 196 ntBASIC5.65□□□□□ -1.5
Ccdc88bQ4QRL3 Gm39033-201ENSMUST00000209158 1021 ntTSL 5 BASIC5.65□□□□□ -1.5
Ccdc88bQ4QRL3 Gm8106-201ENSMUST00000213123 523 ntBASIC5.65□□□□□ -1.5
Ccdc88bQ4QRL3 Gm23615-201ENSMUST00000082602 65 ntBASIC5.65□□□□□ -1.5
Ccdc88bQ4QRL3 Vmn1r184-204ENSMUST00000227534 4807 ntAPPRIS P1 BASIC5.65□□□□□ -1.5
Ccdc88bQ4QRL3 AC160130.1-201ENSMUST00000220734 2735 ntBASIC5.65□□□□□ -1.5
Ccdc88bQ4QRL3 Olfr735-202ENSMUST00000216634 3860 ntAPPRIS ALT2 TSL 3 BASIC5.65□□□□□ -1.51
Ccdc88bQ4QRL3 Gm38699-201ENSMUST00000221301 1740 ntBASIC5.65□□□□□ -1.51
Ccdc88bQ4QRL3 Gm38032-201ENSMUST00000195052 1589 ntBASIC5.65□□□□□ -1.51
Ccdc88bQ4QRL3 Olfr715b-202ENSMUST00000215713 3879 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.51
Ccdc88bQ4QRL3 Gm15190-201ENSMUST00000120855 276 ntBASIC5.64□□□□□ -1.51
Ccdc88bQ4QRL3 Gm14100-201ENSMUST00000125575 651 ntTSL 3 BASIC5.64□□□□□ -1.51
Ccdc88bQ4QRL3 Gm22322-201ENSMUST00000157151 111 ntBASIC5.64□□□□□ -1.51
Ccdc88bQ4QRL3 Gm7258-201ENSMUST00000179317 300 ntBASIC5.64□□□□□ -1.51
Ccdc88bQ4QRL3 Gm29062-201ENSMUST00000186032 694 ntBASIC5.64□□□□□ -1.51
Ccdc88bQ4QRL3 Gm28255-201ENSMUST00000187101 694 ntBASIC5.64□□□□□ -1.51
Ccdc88bQ4QRL3 Gm29545-201ENSMUST00000188878 694 ntBASIC5.64□□□□□ -1.51
Ccdc88bQ4QRL3 Mir7682-201ENSMUST00000198467 58 ntBASIC5.64□□□□□ -1.51
Ccdc88bQ4QRL3 Tprkb-214ENSMUST00000202803 716 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
Ccdc88bQ4QRL3 Rpl26-ps6-201ENSMUST00000216693 434 ntBASIC5.64□□□□□ -1.51
Ccdc88bQ4QRL3 Dst-202ENSMUST00000097786 17212 ntAPPRIS ALT2 TSL 1 (best) BASIC5.64□□□□□ -1.51
Ccdc88bQ4QRL3 Vmn1r185-207ENSMUST00000227695 5292 ntAPPRIS P1 BASIC5.64□□□□□ -1.51
Ccdc88bQ4QRL3 Gm42534-201ENSMUST00000196063 1754 ntBASIC5.64□□□□□ -1.51
Ccdc88bQ4QRL3 Gm42888-201ENSMUST00000202425 4361 ntBASIC5.64□□□□□ -1.51
Ccdc88bQ4QRL3 AC126033.1-201ENSMUST00000227628 6773 ntBASIC5.64□□□□□ -1.51
Ccdc88bQ4QRL3 Ube2v2-204ENSMUST00000118236 893 ntTSL 5 BASIC5.64□□□□□ -1.51
Ccdc88bQ4QRL3 Gm5943-201ENSMUST00000119458 459 ntBASIC5.64□□□□□ -1.51
Ccdc88bQ4QRL3 Gm23380-201ENSMUST00000158448 103 ntBASIC5.64□□□□□ -1.51
Ccdc88bQ4QRL3 Gm22664-201ENSMUST00000158719 105 ntBASIC5.64□□□□□ -1.51
Ccdc88bQ4QRL3 V1rd19-201ENSMUST00000173571 1157 ntAPPRIS P1 BASIC5.64□□□□□ -1.51
Ccdc88bQ4QRL3 Vmn1r-ps17-201ENSMUST00000175797 894 ntBASIC5.64□□□□□ -1.51
Ccdc88bQ4QRL3 Mir6715-201ENSMUST00000184990 57 ntBASIC5.64□□□□□ -1.51
Ccdc88bQ4QRL3 Gm42621-201ENSMUST00000198114 275 ntBASIC5.64□□□□□ -1.51
Ccdc88bQ4QRL3 Gm18672-201ENSMUST00000208035 270 ntBASIC5.64□□□□□ -1.51
Ccdc88bQ4QRL3 Gm44869-201ENSMUST00000208836 357 ntBASIC5.64□□□□□ -1.51
Ccdc88bQ4QRL3 Gm6841-201ENSMUST00000220602 598 ntBASIC5.64□□□□□ -1.51
Ccdc88bQ4QRL3 Gm36525-201ENSMUST00000222590 638 ntTSL 5 BASIC5.64□□□□□ -1.51
Ccdc88bQ4QRL3 AC140397.1-201ENSMUST00000225563 4562 ntBASIC5.63□□□□□ -1.51
Ccdc88bQ4QRL3 Ino80d-205ENSMUST00000165066 13529 ntAPPRIS P1 TSL 5 BASIC5.63□□□□□ -1.51
Ccdc88bQ4QRL3 Neb-202ENSMUST00000036934 22489 ntAPPRIS P2 TSL 5 BASIC5.63□□□□□ -1.51
Ccdc88bQ4QRL3 4930533N22Rik-201ENSMUST00000206433 3509 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
Retrieved 100 of 76,532 protein–RNA pairs in 94.4 ms