Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Gk-208ENSMUST00000156390 4245 ntAPPRIS P3 TSL 1 (best) BASIC6.39□□□□□ -1.39
Rnf40Q3U319 Gm15773-201ENSMUST00000118665 1448 ntBASIC6.39□□□□□ -1.39
Rnf40Q3U319 Homer1-202ENSMUST00000079086 4287 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
Rnf40Q3U319 Tnrc6a-201ENSMUST00000094053 8183 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
Rnf40Q3U319 CT025604.1-201ENSMUST00000221111 3436 ntBASIC6.39□□□□□ -1.39
Rnf40Q3U319 Zfy2-202ENSMUST00000187148 2846 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
Rnf40Q3U319 Cyp2c38-201ENSMUST00000035488 2869 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
Rnf40Q3U319 Gm8300-201ENSMUST00000110152 1873 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
Rnf40Q3U319 Psd3-205ENSMUST00000098696 11316 ntAPPRIS ALT2 TSL 1 (best) BASIC6.38□□□□□ -1.39
Rnf40Q3U319 Gabrq-201ENSMUST00000033711 2000 ntAPPRIS P3 TSL 1 (best) BASIC6.38□□□□□ -1.39
Rnf40Q3U319 Agbl2-202ENSMUST00000037219 3462 ntAPPRIS P2 TSL 1 (best) BASIC6.38□□□□□ -1.39
Rnf40Q3U319 Rgs7-207ENSMUST00000195324 2209 ntAPPRIS ALT2 TSL 5 BASIC6.38□□□□□ -1.39
Rnf40Q3U319 Gm43428-201ENSMUST00000200108 3845 ntBASIC6.38□□□□□ -1.39
Rnf40Q3U319 Gm45493-201ENSMUST00000209494 3948 ntBASIC6.38□□□□□ -1.39
Rnf40Q3U319 Olfr1385-202ENSMUST00000214948 4412 ntAPPRIS P1 TSL 5 BASIC6.38□□□□□ -1.39
Rnf40Q3U319 Agbl2-204ENSMUST00000111481 3448 ntAPPRIS P2 TSL 5 BASIC6.38□□□□□ -1.39
Rnf40Q3U319 Gm25538-201ENSMUST00000101943 107 ntBASIC6.38□□□□□ -1.39
Rnf40Q3U319 Gm22470-201ENSMUST00000104117 130 ntBASIC6.38□□□□□ -1.39
Rnf40Q3U319 Gm14393-202ENSMUST00000109066 564 ntTSL 2 BASIC6.38□□□□□ -1.39
Rnf40Q3U319 Cdrt4os2-201ENSMUST00000128675 494 ntTSL 2 BASIC6.38□□□□□ -1.39
Rnf40Q3U319 Gm27723-201ENSMUST00000157398 63 ntBASIC6.38□□□□□ -1.39
Rnf40Q3U319 Gm24191-201ENSMUST00000157977 122 ntBASIC6.38□□□□□ -1.39
Rnf40Q3U319 Gm22537-201ENSMUST00000158172 199 ntBASIC6.38□□□□□ -1.39
Rnf40Q3U319 Gm23639-201ENSMUST00000175078 132 ntBASIC6.38□□□□□ -1.39
Rnf40Q3U319 1700023F02Rik-203ENSMUST00000189619 473 ntTSL 3 BASIC6.38□□□□□ -1.39
Rnf40Q3U319 Gm45092-201ENSMUST00000205944 545 ntTSL 3 BASIC6.38□□□□□ -1.39
Rnf40Q3U319 Gm30646-201ENSMUST00000207662 180 ntBASIC6.38□□□□□ -1.39
Rnf40Q3U319 Stx3-206ENSMUST00000211047 870 ntTSL 5 BASIC6.38□□□□□ -1.39
Rnf40Q3U319 AC132474.2-201ENSMUST00000217414 573 ntTSL 5 BASIC6.38□□□□□ -1.39
Rnf40Q3U319 AC159709.1-201ENSMUST00000220445 349 ntBASIC6.38□□□□□ -1.39
Rnf40Q3U319 Gm24148-201ENSMUST00000082762 80 ntBASIC6.38□□□□□ -1.39
Rnf40Q3U319 Mir296-201ENSMUST00000083587 79 ntBASIC6.38□□□□□ -1.39
Rnf40Q3U319 Fam205a3-201ENSMUST00000178192 3927 ntAPPRIS P1 TSL 5 BASIC6.38□□□□□ -1.39
Rnf40Q3U319 Fam205a2-202ENSMUST00000180201 3927 ntAPPRIS P1 TSL 5 BASIC6.38□□□□□ -1.39
Rnf40Q3U319 Ktn1-214ENSMUST00000188553 3918 ntAPPRIS ALT2 TSL 5 BASIC6.38□□□□□ -1.39
Rnf40Q3U319 Gm20826-202ENSMUST00000185348 4605 ntAPPRIS P1 TSL 5 BASIC6.38□□□□□ -1.39
Rnf40Q3U319 Gm3453-201ENSMUST00000170686 1756 ntAPPRIS P5 TSL 5 BASIC6.38□□□□□ -1.39
Rnf40Q3U319 Gm37767-201ENSMUST00000193239 1834 ntBASIC6.38□□□□□ -1.39
Rnf40Q3U319 Vmn1r219-202ENSMUST00000226845 5979 ntAPPRIS P1 BASIC6.38□□□□□ -1.39
Rnf40Q3U319 Vmn1r219-205ENSMUST00000228666 5993 ntAPPRIS P1 BASIC6.38□□□□□ -1.39
Rnf40Q3U319 Pramel4-201ENSMUST00000084191 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC6.38□□□□□ -1.39
Rnf40Q3U319 Gm37504-201ENSMUST00000192537 2374 ntBASIC6.38□□□□□ -1.39
Rnf40Q3U319 1700030N03Rik-203ENSMUST00000190575 3146 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
Rnf40Q3U319 Tcerg1-201ENSMUST00000025375 4152 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
Rnf40Q3U319 Gm42715-201ENSMUST00000189629 12746 ntAPPRIS P5 TSL 5 BASIC6.38□□□□□ -1.39
Rnf40Q3U319 Olfr430-202ENSMUST00000213425 3873 ntAPPRIS P1 TSL 5 BASIC6.37□□□□□ -1.39
Rnf40Q3U319 Gm6866-202ENSMUST00000206653 3081 ntTSL 5 BASIC6.37□□□□□ -1.39
Rnf40Q3U319 Rbm46-202ENSMUST00000182637 2058 ntTSL 5 BASIC6.37□□□□□ -1.39
Rnf40Q3U319 Zscan4f-202ENSMUST00000145237 1829 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
Rnf40Q3U319 AC121844.3-201ENSMUST00000219124 1785 ntBASIC6.37□□□□□ -1.39
Rnf40Q3U319 Gm9144-201ENSMUST00000101625 1008 ntBASIC6.37□□□□□ -1.39
Rnf40Q3U319 Traj17-201ENSMUST00000103724 63 ntAPPRIS P1 BASIC6.37□□□□□ -1.39
Rnf40Q3U319 Gm25415-201ENSMUST00000104220 132 ntBASIC6.37□□□□□ -1.39
Rnf40Q3U319 n-R5s67-201ENSMUST00000104336 114 ntBASIC6.37□□□□□ -1.39
Rnf40Q3U319 Gm25379-201ENSMUST00000104338 114 ntBASIC6.37□□□□□ -1.39
Rnf40Q3U319 Serpina3h-202ENSMUST00000116393 1226 ntBASIC6.37□□□□□ -1.39
Rnf40Q3U319 Gm8424-201ENSMUST00000117716 988 ntBASIC6.37□□□□□ -1.39
Rnf40Q3U319 Gm6884-201ENSMUST00000119318 615 ntBASIC6.37□□□□□ -1.39
Rnf40Q3U319 Gm13396-201ENSMUST00000120617 271 ntBASIC6.37□□□□□ -1.39
Rnf40Q3U319 Gm11726-201ENSMUST00000121028 424 ntBASIC6.37□□□□□ -1.39
Rnf40Q3U319 Olfr660-ps1-201ENSMUST00000121526 375 ntBASIC6.37□□□□□ -1.39
Rnf40Q3U319 Gm4886-201ENSMUST00000121874 1176 ntBASIC6.37□□□□□ -1.39
Rnf40Q3U319 Frmpd1os-201ENSMUST00000134640 415 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
Rnf40Q3U319 Gm13062-201ENSMUST00000151337 562 ntTSL 3 BASIC6.37□□□□□ -1.39
Rnf40Q3U319 Gm24965-201ENSMUST00000157922 106 ntBASIC6.37□□□□□ -1.39
Rnf40Q3U319 Gm6434-201ENSMUST00000163316 372 ntBASIC6.37□□□□□ -1.39
Rnf40Q3U319 Gm23632-201ENSMUST00000175289 125 ntBASIC6.37□□□□□ -1.39
Rnf40Q3U319 Gm27684-201ENSMUST00000183778 80 ntBASIC6.37□□□□□ -1.39
Rnf40Q3U319 Ighv1-21-201ENSMUST00000194856 351 ntBASIC6.37□□□□□ -1.39
Rnf40Q3U319 Mir691-201ENSMUST00000199719 78 ntBASIC6.37□□□□□ -1.39
Rnf40Q3U319 Gm44348-201ENSMUST00000200165 122 ntBASIC6.37□□□□□ -1.39
Rnf40Q3U319 Gm42458-201ENSMUST00000201914 369 ntBASIC6.37□□□□□ -1.39
Rnf40Q3U319 Gm44977-201ENSMUST00000205283 420 ntBASIC6.37□□□□□ -1.39
Rnf40Q3U319 Cyp2b27-ps-201ENSMUST00000205582 1279 ntBASIC6.37□□□□□ -1.39
Rnf40Q3U319 Gm45766-201ENSMUST00000211900 478 ntTSL 3 BASIC6.37□□□□□ -1.39
Rnf40Q3U319 AC108401.2-201ENSMUST00000220316 346 ntTSL 3 BASIC6.37□□□□□ -1.39
Rnf40Q3U319 AC122371.2-201ENSMUST00000220583 366 ntBASIC6.37□□□□□ -1.39
Rnf40Q3U319 Pip-201ENSMUST00000075351 588 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
Rnf40Q3U319 n-R5s217-201ENSMUST00000083341 116 ntBASIC6.37□□□□□ -1.39
Rnf40Q3U319 Nfyc-202ENSMUST00000097906 1008 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
Rnf40Q3U319 A230072E10Rik-202ENSMUST00000175825 3292 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
Rnf40Q3U319 Ralgapa2-202ENSMUST00000109986 11030 ntAPPRIS P2 TSL 5 BASIC6.37□□□□□ -1.39
Rnf40Q3U319 Olfr1065-201ENSMUST00000213789 2154 ntAPPRIS P1 TSL 3 BASIC6.37□□□□□ -1.39
Rnf40Q3U319 Gm37773-201ENSMUST00000194141 2120 ntBASIC6.37□□□□□ -1.39
Rnf40Q3U319 Mrgprb2-201ENSMUST00000052730 2077 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
Rnf40Q3U319 Gm381-201ENSMUST00000117443 2037 ntBASIC6.37□□□□□ -1.39
Rnf40Q3U319 Lmbrd2-201ENSMUST00000090380 3210 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
Rnf40Q3U319 Gm43611-201ENSMUST00000196656 4352 ntBASIC6.36□□□□□ -1.39
Rnf40Q3U319 C87977-203ENSMUST00000105755 1802 ntAPPRIS ALT2 TSL 5 BASIC6.36□□□□□ -1.39
Rnf40Q3U319 Slc22a27-202ENSMUST00000182102 1801 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
Rnf40Q3U319 Gm21269-201ENSMUST00000206521 12456 ntTSL 3 BASIC6.36□□□□□ -1.39
Rnf40Q3U319 AC124569.3-201ENSMUST00000224860 1621 ntBASIC6.36□□□□□ -1.39
Rnf40Q3U319 Gm38248-201ENSMUST00000193744 5783 ntBASIC6.36□□□□□ -1.39
Rnf40Q3U319 Olfr1014-202ENSMUST00000213453 2447 ntAPPRIS P1 TSL 3 BASIC6.36□□□□□ -1.39
Rnf40Q3U319 Kmt2d-201ENSMUST00000023741 19823 ntAPPRIS P2 TSL 5 BASIC6.36□□□□□ -1.39
Rnf40Q3U319 Olfr453-202ENSMUST00000213997 3082 ntAPPRIS P1 TSL 5 BASIC6.36□□□□□ -1.39
Rnf40Q3U319 Gm14296-202ENSMUST00000108931 750 ntBASIC6.36□□□□□ -1.39
Rnf40Q3U319 Rpl7a-ps9-201ENSMUST00000117118 777 ntBASIC6.36□□□□□ -1.39
Rnf40Q3U319 Gm2066-201ENSMUST00000118046 389 ntBASIC6.36□□□□□ -1.39
Rnf40Q3U319 Gm14469-201ENSMUST00000118363 202 ntBASIC6.36□□□□□ -1.39
Retrieved 100 of 76,532 protein–RNA pairs in 77.2 ms