Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Sept8-203ENSMUST00000120878 1806 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
Scn11aQ9R053 Gm21949-201ENSMUST00000182006 2369 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
Scn11aQ9R053 Paqr7-201ENSMUST00000081525 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Scn11aQ9R053 Mff-202ENSMUST00000078332 1894 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Scn11aQ9R053 Map7d2-203ENSMUST00000112471 3670 ntAPPRIS P3 TSL 5 BASIC20.71■□□□□ 0.91
Scn11aQ9R053 Gfi1-201ENSMUST00000031205 2860 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
Scn11aQ9R053 Tnfrsf25-201ENSMUST00000025706 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Scn11aQ9R053 Gm26592-201ENSMUST00000180870 1730 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Scn11aQ9R053 Xkr4-201ENSMUST00000070533 3634 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Scn11aQ9R053 Gm17808-201ENSMUST00000200859 894 ntBASIC20.71■□□□□ 0.91
Scn11aQ9R053 Thoc7-201ENSMUST00000065865 937 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Scn11aQ9R053 Nt5c1a-201ENSMUST00000068262 1220 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Scn11aQ9R053 AC125311.2-201ENSMUST00000227477 1940 ntBASIC20.71■□□□□ 0.91
Scn11aQ9R053 Rsph6a-201ENSMUST00000035521 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Scn11aQ9R053 Nectin3-201ENSMUST00000023334 3062 ntAPPRIS P4 TSL 1 (best) BASIC20.7■□□□□ 0.9
Scn11aQ9R053 Prr3-202ENSMUST00000165613 767 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Scn11aQ9R053 S100a16-202ENSMUST00000098911 1127 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Scn11aQ9R053 Hoxa10-201ENSMUST00000121043 1436 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
Scn11aQ9R053 Fbxo17-203ENSMUST00000108279 1563 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Scn11aQ9R053 Sfrp2-201ENSMUST00000029625 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Scn11aQ9R053 Kcnk3-201ENSMUST00000066295 3811 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Scn11aQ9R053 Eno1-202ENSMUST00000080926 2027 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Scn11aQ9R053 Fnbp1-205ENSMUST00000113552 1910 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Scn11aQ9R053 Ptgis-202ENSMUST00000088041 1711 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Scn11aQ9R053 4933427J07Rik-201ENSMUST00000156275 1533 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Scn11aQ9R053 Fam131c-201ENSMUST00000006380 1433 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Scn11aQ9R053 Hmga1-206ENSMUST00000119486 1003 ntAPPRIS P3 TSL 2 BASIC20.69■□□□□ 0.9
Scn11aQ9R053 BC049762-201ENSMUST00000054226 760 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Scn11aQ9R053 Olfr315-201ENSMUST00000081533 998 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
Scn11aQ9R053 Gm5112-201ENSMUST00000204407 2368 ntBASIC20.69■□□□□ 0.9
Scn11aQ9R053 Smim3-201ENSMUST00000042710 1984 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Scn11aQ9R053 Pomp-201ENSMUST00000031654 1579 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Scn11aQ9R053 Tm2d3-202ENSMUST00000065574 1478 ntAPPRIS P4 TSL 1 (best) BASIC20.69■□□□□ 0.9
Scn11aQ9R053 Gm21887-202ENSMUST00000179760 483 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
Scn11aQ9R053 Gm26644-201ENSMUST00000181365 958 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Scn11aQ9R053 Gm17949-201ENSMUST00000210548 1179 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
Scn11aQ9R053 Skp1a-203ENSMUST00000109072 1754 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
Scn11aQ9R053 Arhgef1-204ENSMUST00000117796 3508 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Scn11aQ9R053 Dap-201ENSMUST00000044524 1555 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Scn11aQ9R053 Dexi-203ENSMUST00000184863 2537 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
Scn11aQ9R053 Hes6-201ENSMUST00000086851 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Scn11aQ9R053 Echdc2-203ENSMUST00000116307 893 ntTSL 5 BASIC20.68■□□□□ 0.9
Scn11aQ9R053 Gm11950-201ENSMUST00000121615 838 ntBASIC20.68■□□□□ 0.9
Scn11aQ9R053 Gm13025-201ENSMUST00000141469 1163 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Scn11aQ9R053 Imp3-201ENSMUST00000034827 924 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
Scn11aQ9R053 Etfb-201ENSMUST00000004729 893 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Scn11aQ9R053 Tmem35b-201ENSMUST00000094712 1120 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Scn11aQ9R053 Ffar3-201ENSMUST00000094583 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Scn11aQ9R053 Ccdc91-201ENSMUST00000032441 2459 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Scn11aQ9R053 Dut-201ENSMUST00000051605 1950 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Scn11aQ9R053 Gm26798-201ENSMUST00000181384 2837 ntTSL 5 BASIC20.68■□□□□ 0.9
Scn11aQ9R053 Pitx2-207ENSMUST00000174661 1942 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
Scn11aQ9R053 Cxcl14-202ENSMUST00000224801 1467 ntBASIC20.68■□□□□ 0.9
Scn11aQ9R053 Rpp25-201ENSMUST00000080514 1423 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
Scn11aQ9R053 Ppt2-205ENSMUST00000169067 1392 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
Scn11aQ9R053 Pemt-203ENSMUST00000102693 961 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Scn11aQ9R053 AC156832.2-201ENSMUST00000216217 1295 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Scn11aQ9R053 Mrpl14-201ENSMUST00000024734 645 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Scn11aQ9R053 Bpifa3-201ENSMUST00000028984 1107 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
Scn11aQ9R053 Rnf112-201ENSMUST00000054927 3086 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Scn11aQ9R053 Rdx-202ENSMUST00000061352 1502 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Scn11aQ9R053 Erich2-201ENSMUST00000100041 1749 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Scn11aQ9R053 Frmd3-202ENSMUST00000098006 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Scn11aQ9R053 Mir770-201ENSMUST00000103252 94 ntBASIC20.67■□□□□ 0.9
Scn11aQ9R053 Tm4sf19-201ENSMUST00000115149 1257 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Scn11aQ9R053 Gm25016-201ENSMUST00000158399 131 ntBASIC20.67■□□□□ 0.9
Scn11aQ9R053 Snrnp35-201ENSMUST00000031349 1115 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Scn11aQ9R053 Mmd-202ENSMUST00000107887 1654 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Scn11aQ9R053 Foxp1-230ENSMUST00000177437 2468 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Scn11aQ9R053 Ldlrad4-201ENSMUST00000063775 2493 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Scn11aQ9R053 Gm6443-201ENSMUST00000203599 874 ntBASIC20.66■□□□□ 0.9
Scn11aQ9R053 Gm5953-201ENSMUST00000220644 2616 ntBASIC20.66■□□□□ 0.9
Scn11aQ9R053 Mid1-203ENSMUST00000079443 2815 ntTSL 5 BASIC20.66■□□□□ 0.9
Scn11aQ9R053 Renbp-202ENSMUST00000116578 1418 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Scn11aQ9R053 Gm8258-201ENSMUST00000055593 1449 ntBASIC20.66■□□□□ 0.9
Scn11aQ9R053 Hdhd2-202ENSMUST00000097521 1716 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Scn11aQ9R053 Ipp-202ENSMUST00000106479 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Scn11aQ9R053 Ipp-201ENSMUST00000030461 2115 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
Scn11aQ9R053 Lman2l-202ENSMUST00000115011 2290 ntTSL 5 BASIC20.65■□□□□ 0.9
Scn11aQ9R053 Ddhd2-206ENSMUST00000211688 2265 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Scn11aQ9R053 Slbp-205ENSMUST00000139518 1191 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
Scn11aQ9R053 Hrh3-204ENSMUST00000165248 1224 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
Scn11aQ9R053 Ndufab1-ps-201ENSMUST00000166096 468 ntBASIC20.65■□□□□ 0.9
Scn11aQ9R053 Gm34933-201ENSMUST00000203245 1067 ntTSL 5 BASIC20.65■□□□□ 0.9
Scn11aQ9R053 Olfr1232-201ENSMUST00000099785 936 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
Scn11aQ9R053 Matn4-202ENSMUST00000103104 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Scn11aQ9R053 Snrpd2-201ENSMUST00000049294 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Scn11aQ9R053 Lrriq4-203ENSMUST00000172350 1797 ntAPPRIS P3 TSL 5 BASIC20.65■□□□□ 0.9
Scn11aQ9R053 Anp32e-201ENSMUST00000015893 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Scn11aQ9R053 Irx5-201ENSMUST00000034184 2450 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Scn11aQ9R053 Zdhhc6-201ENSMUST00000076891 2263 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Scn11aQ9R053 Gpc6-204ENSMUST00000125435 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Scn11aQ9R053 Spg21-202ENSMUST00000213957 1302 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Scn11aQ9R053 Hotairm1-202ENSMUST00000132559 713 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
Scn11aQ9R053 Aicda-202ENSMUST00000160685 1292 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
Scn11aQ9R053 4933412L11Rik-201ENSMUST00000203702 1044 ntBASIC20.64■□□□□ 0.9
Scn11aQ9R053 AC140264.2-201ENSMUST00000219668 289 ntTSL 2 BASIC20.64■□□□□ 0.9
Scn11aQ9R053 Six3os1-206ENSMUST00000175921 2737 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
Scn11aQ9R053 Tmem198-202ENSMUST00000113575 2185 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Scn11aQ9R053 Gm26627-201ENSMUST00000181540 1487 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Retrieved 100 of 76,532 protein–RNA pairs in 11.4 ms