Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Man2a1-201ENSMUST00000086723 6991 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Smc1aQ9CU62 Smox-209ENSMUST00000110189 1919 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Smc1aQ9CU62 Blmh-201ENSMUST00000021197 2497 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Smc1aQ9CU62 Rnf157-201ENSMUST00000100202 4619 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Smc1aQ9CU62 Nadk2-202ENSMUST00000100789 3578 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
Smc1aQ9CU62 9930012K11Rik-201ENSMUST00000058240 1986 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
Smc1aQ9CU62 Tpm1-208ENSMUST00000113689 904 ntTSL 5 BASIC19.45■□□□□ 0.7
Smc1aQ9CU62 Dnajb3-201ENSMUST00000119972 1051 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
Smc1aQ9CU62 Kcnn4-203ENSMUST00000205626 461 ntTSL 5 BASIC19.45■□□□□ 0.7
Smc1aQ9CU62 4930554C24Rik-202ENSMUST00000216019 1159 ntTSL 5 BASIC19.45■□□□□ 0.7
Smc1aQ9CU62 Hsbp1-201ENSMUST00000034300 1208 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Smc1aQ9CU62 Gm7579-201ENSMUST00000097943 732 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
Smc1aQ9CU62 Tm7sf2-202ENSMUST00000113543 1498 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Smc1aQ9CU62 2200002D01Rik-201ENSMUST00000032808 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Smc1aQ9CU62 Pex6-201ENSMUST00000002840 3200 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Smc1aQ9CU62 Usp6nl-202ENSMUST00000114937 7484 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Smc1aQ9CU62 Tgif1-209ENSMUST00000166395 1714 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Smc1aQ9CU62 Myb-201ENSMUST00000020158 3074 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
Smc1aQ9CU62 Slc2a8-201ENSMUST00000028129 2108 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Smc1aQ9CU62 Rrp9-201ENSMUST00000047721 1586 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Smc1aQ9CU62 Phb-204ENSMUST00000125172 1799 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Smc1aQ9CU62 Crebl2-201ENSMUST00000046303 3629 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Smc1aQ9CU62 Map3k5-201ENSMUST00000095806 5450 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Smc1aQ9CU62 Arpc1a-201ENSMUST00000031625 1632 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Smc1aQ9CU62 Rnf103-201ENSMUST00000064637 3264 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Smc1aQ9CU62 Snrnp35-202ENSMUST00000111453 1181 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
Smc1aQ9CU62 2700033N17Rik-201ENSMUST00000140185 721 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Smc1aQ9CU62 Gm20695-202ENSMUST00000176233 1012 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
Smc1aQ9CU62 Cldn14-205ENSMUST00000177648 1266 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
Smc1aQ9CU62 Donson-201ENSMUST00000023682 2360 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Smc1aQ9CU62 Mapre3-201ENSMUST00000031058 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Smc1aQ9CU62 Strn-203ENSMUST00000145910 8629 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Smc1aQ9CU62 Gpaa1-210ENSMUST00000172281 1809 ntTSL 5 BASIC19.44■□□□□ 0.7
Smc1aQ9CU62 Xpr1-202ENSMUST00000111774 2753 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Smc1aQ9CU62 Srcin1-203ENSMUST00000107596 7054 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Smc1aQ9CU62 Flg-201ENSMUST00000050758 1488 ntBASIC19.43■□□□□ 0.7
Smc1aQ9CU62 Dvl2-201ENSMUST00000019362 2968 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Smc1aQ9CU62 Ube3c-201ENSMUST00000049453 5048 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Smc1aQ9CU62 D330020A13Rik-201ENSMUST00000181956 1069 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
Smc1aQ9CU62 Crabp1-201ENSMUST00000034830 802 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Smc1aQ9CU62 Actr3-202ENSMUST00000178474 2565 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Smc1aQ9CU62 Puf60-201ENSMUST00000002599 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Smc1aQ9CU62 Gpr137-203ENSMUST00000099776 1569 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Smc1aQ9CU62 Paqr7-201ENSMUST00000081525 2351 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Smc1aQ9CU62 Ghrhr-202ENSMUST00000203241 1328 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Smc1aQ9CU62 Tmem198-202ENSMUST00000113575 2185 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Smc1aQ9CU62 Pigl-201ENSMUST00000014389 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Smc1aQ9CU62 Cfap206-202ENSMUST00000108136 1688 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Smc1aQ9CU62 Mrpl9-202ENSMUST00000196143 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Smc1aQ9CU62 Rab1a-201ENSMUST00000020358 2827 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Smc1aQ9CU62 Dbnl-203ENSMUST00000109845 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Smc1aQ9CU62 Hspa8-201ENSMUST00000015800 2394 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Smc1aQ9CU62 Ociad2-202ENSMUST00000200776 2359 ntTSL 3 BASIC19.42■□□□□ 0.7
Smc1aQ9CU62 Kmt5b-202ENSMUST00000052699 3290 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
Smc1aQ9CU62 Npas3-203ENSMUST00000223057 2724 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
Smc1aQ9CU62 Mpped2-202ENSMUST00000111063 2848 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Smc1aQ9CU62 Klhdc9-201ENSMUST00000061878 1558 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Smc1aQ9CU62 Tnnt2-202ENSMUST00000112085 1076 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
Smc1aQ9CU62 Tnnt2-203ENSMUST00000112086 1094 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
Smc1aQ9CU62 Tnnt2-204ENSMUST00000112087 1112 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
Smc1aQ9CU62 Tnnt2-206ENSMUST00000178854 1076 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
Smc1aQ9CU62 Tnnt2-211ENSMUST00000189355 1112 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
Smc1aQ9CU62 Tnnt2-212ENSMUST00000189732 1123 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
Smc1aQ9CU62 Gm9484-201ENSMUST00000195892 1159 ntBASIC19.42■□□□□ 0.7
Smc1aQ9CU62 Zcchc13-201ENSMUST00000033692 1085 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
Smc1aQ9CU62 Znrf4-201ENSMUST00000052211 1236 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
Smc1aQ9CU62 Bmyc-201ENSMUST00000061483 983 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
Smc1aQ9CU62 Rasal2-201ENSMUST00000078308 10047 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Smc1aQ9CU62 Arl1-202ENSMUST00000116234 2080 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Smc1aQ9CU62 Mapk1-202ENSMUST00000069107 5099 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Smc1aQ9CU62 Acp4-203ENSMUST00000118216 1454 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
Smc1aQ9CU62 Tle2-213ENSMUST00000146358 2749 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
Smc1aQ9CU62 Mid2-202ENSMUST00000112990 6271 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
Smc1aQ9CU62 Dnaaf5-203ENSMUST00000196441 2426 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Smc1aQ9CU62 Wnt6-201ENSMUST00000006716 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Smc1aQ9CU62 Rbmxl1-201ENSMUST00000049245 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Smc1aQ9CU62 Cfl1-201ENSMUST00000116560 1148 ntTSL 5 BASIC19.41■□□□□ 0.7
Smc1aQ9CU62 C230012O17Rik-201ENSMUST00000130085 2999 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Smc1aQ9CU62 Gm19610-201ENSMUST00000202894 408 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Smc1aQ9CU62 Fkbp11-201ENSMUST00000003445 731 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Smc1aQ9CU62 Spock1-201ENSMUST00000172326 1320 ntAPPRIS P3 TSL 5 BASIC19.41■□□□□ 0.7
Smc1aQ9CU62 Axin1-203ENSMUST00000163421 2890 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
Smc1aQ9CU62 Nrxn2-202ENSMUST00000113458 3503 ntTSL 5 BASIC19.41■□□□□ 0.7
Smc1aQ9CU62 Fkbp5-201ENSMUST00000079413 3542 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Smc1aQ9CU62 4930560O18Rik-201ENSMUST00000207051 1595 ntBASIC19.4■□□□□ 0.7
Smc1aQ9CU62 Ppp3ca-201ENSMUST00000056758 2194 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Smc1aQ9CU62 Tmem57-201ENSMUST00000030628 3826 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Smc1aQ9CU62 Akain1-201ENSMUST00000169935 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Smc1aQ9CU62 Dcaf8-206ENSMUST00000192704 2859 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Smc1aQ9CU62 Pex5-202ENSMUST00000080557 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Smc1aQ9CU62 Gtf2a2-204ENSMUST00000119905 622 ntTSL 2 BASIC19.4■□□□□ 0.7
Smc1aQ9CU62 Scamp4-202ENSMUST00000180350 1271 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Smc1aQ9CU62 Wnt10b-205ENSMUST00000226846 1204 ntBASIC19.4■□□□□ 0.7
Smc1aQ9CU62 AC107452.1-201ENSMUST00000227963 481 ntBASIC19.4■□□□□ 0.7
Smc1aQ9CU62 Fgfr1op2-202ENSMUST00000058245 918 ntTSL 2 BASIC19.4■□□□□ 0.7
Smc1aQ9CU62 Tbx3os2-201ENSMUST00000135385 1345 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Smc1aQ9CU62 Gtpbp3-208ENSMUST00000168847 2803 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
Smc1aQ9CU62 Ptges2-201ENSMUST00000028162 4978 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Smc1aQ9CU62 Il6st-208ENSMUST00000184311 2985 ntAPPRIS P2 TSL 5 BASIC19.39■□□□□ 0.7
Smc1aQ9CU62 Rrs1-201ENSMUST00000072079 2048 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 46 ms