Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Dap3-201ENSMUST00000090938 4760 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Upf3aQ3ULJ3 Yif1b-203ENSMUST00000108238 1126 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Upf3aQ3ULJ3 Mras-203ENSMUST00000122384 1122 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Upf3aQ3ULJ3 Srgn-205ENSMUST00000162161 694 ntAPPRIS P1 TSL 3 BASIC18.33■□□□□ 0.52
Upf3aQ3ULJ3 AC130713.1-201ENSMUST00000228853 1096 ntBASIC18.33■□□□□ 0.52
Upf3aQ3ULJ3 Pafah1b3-201ENSMUST00000005583 901 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Upf3aQ3ULJ3 4930426D05Rik-202ENSMUST00000139804 1650 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Upf3aQ3ULJ3 Chka-201ENSMUST00000025760 2319 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
Upf3aQ3ULJ3 Stx2-201ENSMUST00000031378 2939 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
Upf3aQ3ULJ3 4732440D04Rik-203ENSMUST00000191825 5428 ntBASIC18.32■□□□□ 0.52
Upf3aQ3ULJ3 Spry1-202ENSMUST00000108107 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Upf3aQ3ULJ3 Chst8-203ENSMUST00000154629 2079 ntTSL 5 BASIC18.32■□□□□ 0.52
Upf3aQ3ULJ3 Gm26885-201ENSMUST00000181920 1688 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Upf3aQ3ULJ3 Gm11950-201ENSMUST00000121615 838 ntBASIC18.32■□□□□ 0.52
Upf3aQ3ULJ3 Cyp4f41-ps-201ENSMUST00000126790 1077 ntBASIC18.32■□□□□ 0.52
Upf3aQ3ULJ3 4930401G09Rik-201ENSMUST00000139500 637 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Upf3aQ3ULJ3 Samd13-205ENSMUST00000197989 591 ntTSL 5 BASIC18.32■□□□□ 0.52
Upf3aQ3ULJ3 Gm21057-201ENSMUST00000206022 670 ntTSL 3 BASIC18.32■□□□□ 0.52
Upf3aQ3ULJ3 4933406B15Rik-201ENSMUST00000220065 1182 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Upf3aQ3ULJ3 S100a16-202ENSMUST00000098911 1127 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Upf3aQ3ULJ3 Actl10-201ENSMUST00000104928 1501 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
Upf3aQ3ULJ3 4933427J07Rik-201ENSMUST00000156275 1533 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Upf3aQ3ULJ3 Ppp2r1b-205ENSMUST00000175640 1523 ntTSL 5 BASIC18.32■□□□□ 0.52
Upf3aQ3ULJ3 Actl10-202ENSMUST00000226583 1501 ntBASIC18.32■□□□□ 0.52
Upf3aQ3ULJ3 Ltbp4-205ENSMUST00000121175 5118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Upf3aQ3ULJ3 Arx-201ENSMUST00000046565 2881 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Upf3aQ3ULJ3 Dact2-201ENSMUST00000053218 2808 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Upf3aQ3ULJ3 Elmo2-204ENSMUST00000103088 3052 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
Upf3aQ3ULJ3 Tmem175-204ENSMUST00000146207 1686 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Upf3aQ3ULJ3 Dapk1-207ENSMUST00000226059 5009 ntBASIC18.31■□□□□ 0.52
Upf3aQ3ULJ3 Cnpy1-201ENSMUST00000117098 2661 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Upf3aQ3ULJ3 Ntn1-201ENSMUST00000021284 5738 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
Upf3aQ3ULJ3 Mpp3-203ENSMUST00000107167 2066 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Upf3aQ3ULJ3 Lamtor5-201ENSMUST00000145735 881 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Upf3aQ3ULJ3 Gm18958-201ENSMUST00000174258 762 ntBASIC18.31■□□□□ 0.52
Upf3aQ3ULJ3 Gm8797-201ENSMUST00000192045 490 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
Upf3aQ3ULJ3 Ndufb8-201ENSMUST00000026222 680 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Upf3aQ3ULJ3 Pdrg1-201ENSMUST00000028972 1273 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Upf3aQ3ULJ3 Gmnn-201ENSMUST00000006898 1127 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Upf3aQ3ULJ3 Trmo-201ENSMUST00000030015 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Upf3aQ3ULJ3 Gm7628-201ENSMUST00000134690 2010 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Upf3aQ3ULJ3 Six3os1-206ENSMUST00000175921 2737 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Upf3aQ3ULJ3 Klhl36-201ENSMUST00000034287 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Upf3aQ3ULJ3 Igsf8-202ENSMUST00000085912 2182 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
Upf3aQ3ULJ3 Golph3-205ENSMUST00000228671 2842 ntBASIC18.31■□□□□ 0.52
Upf3aQ3ULJ3 Zswim8-208ENSMUST00000224751 5951 ntAPPRIS ALT2 BASIC18.3■□□□□ 0.52
Upf3aQ3ULJ3 Snx5-202ENSMUST00000110030 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Upf3aQ3ULJ3 Cyb5r4-201ENSMUST00000168529 2644 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Upf3aQ3ULJ3 Pxk-202ENSMUST00000112689 2840 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Upf3aQ3ULJ3 B3galnt2-204ENSMUST00000221300 2397 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Upf3aQ3ULJ3 Atp5g1-202ENSMUST00000107684 596 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Upf3aQ3ULJ3 Flg-207ENSMUST00000180293 768 ntAPPRIS ALT2 BASIC18.3■□□□□ 0.52
Upf3aQ3ULJ3 Gm26620-201ENSMUST00000180542 817 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
Upf3aQ3ULJ3 Mir8112-201ENSMUST00000184382 131 ntBASIC18.3■□□□□ 0.52
Upf3aQ3ULJ3 Gm18669-201ENSMUST00000216049 778 ntBASIC18.3■□□□□ 0.52
Upf3aQ3ULJ3 Atg101-201ENSMUST00000048393 1230 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Upf3aQ3ULJ3 Manbal-201ENSMUST00000081202 1107 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Upf3aQ3ULJ3 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Upf3aQ3ULJ3 Srsf11-202ENSMUST00000072875 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Upf3aQ3ULJ3 Cnot11-201ENSMUST00000003219 3162 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Upf3aQ3ULJ3 Gm6627-201ENSMUST00000218299 2386 ntBASIC18.3■□□□□ 0.52
Upf3aQ3ULJ3 Prps1l3-201ENSMUST00000139049 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Upf3aQ3ULJ3 Rsu1-201ENSMUST00000028059 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Upf3aQ3ULJ3 Gm27029-202ENSMUST00000107259 1855 ntAPPRIS P5 TSL 5 BASIC18.29■□□□□ 0.52
Upf3aQ3ULJ3 Idnk-204ENSMUST00000226010 1898 ntBASIC18.29■□□□□ 0.52
Upf3aQ3ULJ3 Pgrmc1-201ENSMUST00000073339 1857 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Upf3aQ3ULJ3 1810026B05Rik-205ENSMUST00000184855 409 ntTSL 3 BASIC18.29■□□□□ 0.52
Upf3aQ3ULJ3 Krt10-202ENSMUST00000211768 557 ntTSL 3 BASIC18.29■□□□□ 0.52
Upf3aQ3ULJ3 Nme3-201ENSMUST00000024978 715 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Upf3aQ3ULJ3 Cldn22-201ENSMUST00000038693 995 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
Upf3aQ3ULJ3 Rpl36al-201ENSMUST00000054544 526 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Upf3aQ3ULJ3 Tuba3b-201ENSMUST00000087445 1775 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Upf3aQ3ULJ3 Map3k9-201ENSMUST00000035987 4564 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Upf3aQ3ULJ3 Gabra4-205ENSMUST00000199357 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Upf3aQ3ULJ3 Olig2-201ENSMUST00000035608 2437 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Upf3aQ3ULJ3 Gpr137-201ENSMUST00000025909 1717 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Upf3aQ3ULJ3 Srsf1-201ENSMUST00000079866 2948 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Upf3aQ3ULJ3 Rxra-201ENSMUST00000077257 4905 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Upf3aQ3ULJ3 Gpd1-203ENSMUST00000162194 1515 ntTSL 5 BASIC18.28■□□□□ 0.52
Upf3aQ3ULJ3 Rab11b-203ENSMUST00000173860 1544 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Upf3aQ3ULJ3 Cd37-204ENSMUST00000209779 2541 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Upf3aQ3ULJ3 Ripk2-201ENSMUST00000037035 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Upf3aQ3ULJ3 Clint1-201ENSMUST00000109260 3311 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
Upf3aQ3ULJ3 Aida-206ENSMUST00000193625 1810 ntTSL 3 BASIC18.28■□□□□ 0.52
Upf3aQ3ULJ3 Tubb4b-ps1-201ENSMUST00000179460 1336 ntBASIC18.28■□□□□ 0.52
Upf3aQ3ULJ3 Cdca4-202ENSMUST00000220899 1994 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Upf3aQ3ULJ3 Ppm1h-201ENSMUST00000067918 6369 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Upf3aQ3ULJ3 Sh3yl1-202ENSMUST00000110880 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Upf3aQ3ULJ3 Naa60-212ENSMUST00000186375 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Upf3aQ3ULJ3 Jph1-201ENSMUST00000038382 4809 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Upf3aQ3ULJ3 Tal1-204ENSMUST00000162489 2894 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Upf3aQ3ULJ3 Has3-202ENSMUST00000175987 1154 ntTSL 5 BASIC18.28■□□□□ 0.52
Upf3aQ3ULJ3 Mrpl36-203ENSMUST00000222030 680 ntAPPRIS P1 TSL 3 BASIC18.28■□□□□ 0.52
Upf3aQ3ULJ3 Imp3-201ENSMUST00000034827 924 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
Upf3aQ3ULJ3 Ephx4-201ENSMUST00000049146 1279 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
Upf3aQ3ULJ3 Inppl1-202ENSMUST00000165052 4730 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Upf3aQ3ULJ3 Gm5464-201ENSMUST00000100453 2156 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
Upf3aQ3ULJ3 Mgea5-201ENSMUST00000026243 5024 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Upf3aQ3ULJ3 Hhat-203ENSMUST00000128619 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Upf3aQ3ULJ3 Adgrl1-207ENSMUST00000141158 8181 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 62.5 ms