Protein–RNA interactions for Protein: Q3U1D9

UPF0602 protein C4orf47 homolog, mousemouse

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Q3U1D9 Pparg-202ENSMUST00000171644 2125 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Q3U1D9 Ankib1-201ENSMUST00000043551 6426 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Q3U1D9 Foxj1-201ENSMUST00000036215 2623 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Q3U1D9 Cables2-201ENSMUST00000108891 2975 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Q3U1D9 Trim47-202ENSMUST00000106441 2192 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Q3U1D9 March11-203ENSMUST00000152841 1365 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Q3U1D9 Nptn-212ENSMUST00000177292 1390 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
Q3U1D9 A930001A20Rik-201ENSMUST00000182586 1366 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Q3U1D9 Eif4g3-201ENSMUST00000058133 2663 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Q3U1D9 Rnf157-201ENSMUST00000100202 4619 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Q3U1D9 Gnptg-202ENSMUST00000115154 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Q3U1D9 Gm13474-201ENSMUST00000122466 815 ntBASIC15.12■□□□□ 0.01
Q3U1D9 Gm9731-201ENSMUST00000209480 747 ntBASIC15.12■□□□□ 0.01
Q3U1D9 Grtp1-204ENSMUST00000209691 1030 ntTSL 5 BASIC15.12■□□□□ 0.01
Q3U1D9 Gm9745-201ENSMUST00000021573 684 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
Q3U1D9 Eif3h-201ENSMUST00000022925 1295 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Q3U1D9 Olfr279-201ENSMUST00000050451 933 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
Q3U1D9 BC048679-201ENSMUST00000073406 522 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
Q3U1D9 Hist3h2ba-201ENSMUST00000078267 614 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
Q3U1D9 Prmt6-201ENSMUST00000106567 2450 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
Q3U1D9 Nos1ap-207ENSMUST00000161966 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Q3U1D9 Fez2-202ENSMUST00000112487 2020 ntAPPRIS ALT1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Q3U1D9 Fam126a-202ENSMUST00000101513 1679 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Q3U1D9 Fam166b-201ENSMUST00000052829 1349 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Q3U1D9 Ism1-201ENSMUST00000099307 2944 ntTSL 5 BASIC15.12■□□□□ 0.01
Q3U1D9 Phldb3-204ENSMUST00000206422 2564 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
Q3U1D9 Elac2-201ENSMUST00000071891 2771 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Q3U1D9 Tmem81-201ENSMUST00000058167 1742 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Q3U1D9 Tbc1d9b-202ENSMUST00000101270 5213 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
Q3U1D9 Rab3ip-201ENSMUST00000020375 2690 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Q3U1D9 Srsf11-202ENSMUST00000072875 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Q3U1D9 Plekhf1-201ENSMUST00000098513 5263 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Q3U1D9 Ttc19-201ENSMUST00000050646 3410 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
Q3U1D9 Fndc4-202ENSMUST00000172435 2333 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Q3U1D9 Csf3-201ENSMUST00000038886 1413 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Q3U1D9 Tpbgl-201ENSMUST00000178124 3022 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
Q3U1D9 Ccdc125-202ENSMUST00000170347 1216 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Q3U1D9 AC134329.2-201ENSMUST00000217897 428 ntBASIC15.11■□□□□ 0.01
Q3U1D9 Gm7791-201ENSMUST00000219066 539 ntBASIC15.11■□□□□ 0.01
Q3U1D9 Tspoap1-202ENSMUST00000100644 7390 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
Q3U1D9 Rilp-201ENSMUST00000042972 1489 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Q3U1D9 Nsmf-205ENSMUST00000114386 2685 ntTSL 5 BASIC15.11■□□□□ 0.01
Q3U1D9 Ripk2-201ENSMUST00000037035 2692 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Q3U1D9 Galnt9-201ENSMUST00000040001 2883 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Q3U1D9 Cdk12-203ENSMUST00000107539 5912 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
Q3U1D9 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Q3U1D9 Dbndd2-201ENSMUST00000017878 1338 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
Q3U1D9 Ulk1-201ENSMUST00000031490 5213 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
Q3U1D9 Grb14-201ENSMUST00000028252 1986 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Q3U1D9 F2rl3-201ENSMUST00000058099 1751 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Q3U1D9 Vegfc-201ENSMUST00000033919 2449 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Q3U1D9 Rogdi-207ENSMUST00000202281 1355 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Q3U1D9 Srsf1-201ENSMUST00000079866 2948 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Q3U1D9 Chka-201ENSMUST00000025760 2319 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
Q3U1D9 Sept4-205ENSMUST00000107962 1678 ntAPPRIS ALT1 TSL 5 BASIC15.1■□□□□ 0.01
Q3U1D9 Fam105a-203ENSMUST00000226170 3043 ntBASIC15.1■□□□□ 0.01
Q3U1D9 Htra3-202ENSMUST00000114233 1901 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Q3U1D9 Cyb5r4-201ENSMUST00000168529 2644 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Q3U1D9 Bcl11b-203ENSMUST00000109891 2888 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Q3U1D9 Slc25a16-201ENSMUST00000044977 3145 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Q3U1D9 Pdcd5-202ENSMUST00000120714 767 ntTSL 3 BASIC15.1■□□□□ 0.01
Q3U1D9 Gm14453-201ENSMUST00000139677 553 ntTSL 3 BASIC15.1■□□□□ 0.01
Q3U1D9 1810012K08Rik-201ENSMUST00000155199 574 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Q3U1D9 Steap1-201ENSMUST00000015796 1230 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Q3U1D9 Gas5-203ENSMUST00000159119 665 ntTSL 5 BASIC15.1■□□□□ 0.01
Q3U1D9 Rfesd-202ENSMUST00000167271 595 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
Q3U1D9 Pih1d2-201ENSMUST00000000171 1256 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Q3U1D9 Aga-203ENSMUST00000211424 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Q3U1D9 Cnn1-203ENSMUST00000214601 1225 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Q3U1D9 Gm18101-201ENSMUST00000215769 548 ntBASIC15.1■□□□□ 0.01
Q3U1D9 Mrpl28-201ENSMUST00000025014 1048 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Q3U1D9 Prok1-201ENSMUST00000049852 813 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Q3U1D9 Camk2b-202ENSMUST00000019133 2223 ntTSL 5 BASIC15.1■□□□□ 0.01
Q3U1D9 Gnao1-207ENSMUST00000138659 5526 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Q3U1D9 Hpn-209ENSMUST00000168884 1762 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Q3U1D9 Polr3d-201ENSMUST00000000793 2016 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Q3U1D9 Tada2b-201ENSMUST00000031097 3791 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
Q3U1D9 Il17rc-201ENSMUST00000058300 2302 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Q3U1D9 Gpr180-201ENSMUST00000022728 1875 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Q3U1D9 Spata2l-201ENSMUST00000098327 2380 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Q3U1D9 Dlgap1-209ENSMUST00000140728 2173 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
Q3U1D9 Gfra1-208ENSMUST00000152507 1937 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
Q3U1D9 Tbcel-201ENSMUST00000066148 5000 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Q3U1D9 Mef2d-202ENSMUST00000107558 1767 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Q3U1D9 Zxdc-203ENSMUST00000113539 4864 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Q3U1D9 Gmcl1-202ENSMUST00000113679 960 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Q3U1D9 Cdpf1-204ENSMUST00000144067 761 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
Q3U1D9 Gm6659-201ENSMUST00000174752 547 ntBASIC15.09■□□□□ 0.01
Q3U1D9 Rpl18a-206ENSMUST00000212709 700 ntTSL 2 BASIC15.09■□□□□ 0.01
Q3U1D9 AC130671.1-201ENSMUST00000227384 1237 ntBASIC15.09■□□□□ 0.01
Q3U1D9 Galk2-202ENSMUST00000094604 1928 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Q3U1D9 Ssx2ip-204ENSMUST00000106153 3446 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
Q3U1D9 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
Q3U1D9 Tnrc6c-202ENSMUST00000106344 8847 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
Q3U1D9 Kmt5b-204ENSMUST00000113970 2975 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Q3U1D9 Shc3-201ENSMUST00000021898 1537 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Q3U1D9 Mrpl15-203ENSMUST00000130201 1894 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
Q3U1D9 Pdlim5-211ENSMUST00000198381 1555 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
Q3U1D9 Gnas-222ENSMUST00000180362 1645 ntTSL 5 BASIC15.08■□□□□ 0
Q3U1D9 Arnt-204ENSMUST00000107160 783 ntTSL 1 (best) BASIC15.08■□□□□ 0
Retrieved 100 of 76,532 protein–RNA pairs in 21.4 ms