Protein–RNA interactions for Protein: O89116

Vti1a, Vesicle transport through interaction with t-SNAREs homolog 1A, mousemouse

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vti1aO89116 Med14-201ENSMUST00000076016 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Vti1aO89116 Garem1-201ENSMUST00000049260 4923 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Vti1aO89116 Nxt1-202ENSMUST00000109961 1116 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
Vti1aO89116 Tpsg1-202ENSMUST00000160377 1040 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Vti1aO89116 A730015C16Rik-201ENSMUST00000164855 1221 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
Vti1aO89116 Gm20033-201ENSMUST00000180470 572 ntTSL 3 BASIC18.8■□□□□ 0.6
Vti1aO89116 Gm26829-201ENSMUST00000180581 934 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Vti1aO89116 Nxt1-201ENSMUST00000047177 956 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Vti1aO89116 Ewsr1-204ENSMUST00000093365 1290 ntTSL 5 BASIC18.8■□□□□ 0.6
Vti1aO89116 Aatk-203ENSMUST00000103020 5687 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
Vti1aO89116 Ptpre-201ENSMUST00000073961 5410 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
Vti1aO89116 Wac-207ENSMUST00000167020 5208 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
Vti1aO89116 Rassf1-201ENSMUST00000010211 1727 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Vti1aO89116 Gm15408-201ENSMUST00000124198 1379 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Vti1aO89116 Fam172a-202ENSMUST00000099358 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Vti1aO89116 Gm21949-201ENSMUST00000182006 2369 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
Vti1aO89116 H2-Q7-202ENSMUST00000076256 1523 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
Vti1aO89116 Klhl31-201ENSMUST00000057781 6494 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Vti1aO89116 Lzic-201ENSMUST00000030842 1817 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Vti1aO89116 Map3k5-201ENSMUST00000095806 5450 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Vti1aO89116 Keap1-206ENSMUST00000216436 2498 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
Vti1aO89116 Man1c1-201ENSMUST00000038628 4285 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Vti1aO89116 Abhd11-206ENSMUST00000154469 1473 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Vti1aO89116 Ankrd39-201ENSMUST00000001172 2109 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Vti1aO89116 Trpc4ap-202ENSMUST00000103140 3091 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
Vti1aO89116 B3galnt2-207ENSMUST00000221974 2439 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Vti1aO89116 Bpnt1-202ENSMUST00000110965 1046 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Vti1aO89116 Gm6659-201ENSMUST00000174752 547 ntBASIC18.79■□□□□ 0.6
Vti1aO89116 Gm10517-202ENSMUST00000192970 758 ntBASIC18.79■□□□□ 0.6
Vti1aO89116 Gm9694-201ENSMUST00000193347 1189 ntBASIC18.79■□□□□ 0.6
Vti1aO89116 Cdk2ap2-201ENSMUST00000025779 1080 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Vti1aO89116 Arl2-201ENSMUST00000025893 1144 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Vti1aO89116 0610009B22Rik-201ENSMUST00000007921 813 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Vti1aO89116 Ppp1r3f-205ENSMUST00000150787 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Vti1aO89116 Rnf157-201ENSMUST00000100202 4619 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Vti1aO89116 Shisa7-203ENSMUST00000119433 3481 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Vti1aO89116 Snap91-201ENSMUST00000036347 4237 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
Vti1aO89116 Eri1-201ENSMUST00000033927 5079 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Vti1aO89116 Stac2-201ENSMUST00000017544 3050 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Vti1aO89116 Gm38345-201ENSMUST00000192635 1748 ntBASIC18.78■□□□□ 0.6
Vti1aO89116 Hdgfl3-201ENSMUST00000026094 2865 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Vti1aO89116 Agxt-201ENSMUST00000027491 1553 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Vti1aO89116 Gm20544-201ENSMUST00000174338 690 ntTSL 3 BASIC18.78■□□□□ 0.6
Vti1aO89116 Gm27463-201ENSMUST00000183569 57 ntBASIC18.78■□□□□ 0.6
Vti1aO89116 Fam167b-201ENSMUST00000052835 913 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Vti1aO89116 BC017158-201ENSMUST00000033044 2627 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Vti1aO89116 Abhd5-202ENSMUST00000111497 2576 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Vti1aO89116 Itpripl2-201ENSMUST00000178344 6865 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
Vti1aO89116 Hmces-201ENSMUST00000032141 1464 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Vti1aO89116 Rsph6a-201ENSMUST00000035521 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Vti1aO89116 Agbl5-209ENSMUST00000201225 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Vti1aO89116 Fst-202ENSMUST00000223640 2612 ntBASIC18.77■□□□□ 0.6
Vti1aO89116 Pfdn6-201ENSMUST00000025163 807 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Vti1aO89116 Rab11fip3-202ENSMUST00000120691 5103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Vti1aO89116 Noxa1-201ENSMUST00000044018 1617 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
Vti1aO89116 Mtx1-201ENSMUST00000073572 1617 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Vti1aO89116 Rd3-201ENSMUST00000175680 1969 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
Vti1aO89116 Lat2-202ENSMUST00000077636 1717 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
Vti1aO89116 Pcbp1-201ENSMUST00000053015 1830 ntAPPRIS P1 BASIC18.77■□□□□ 0.59
Vti1aO89116 Sqor-201ENSMUST00000005953 1804 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Vti1aO89116 Xrcc6-202ENSMUST00000100399 3296 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Vti1aO89116 Zscan12-201ENSMUST00000053293 2270 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Vti1aO89116 Farp1-201ENSMUST00000026635 4885 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
Vti1aO89116 Crlf3-201ENSMUST00000061283 2396 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Vti1aO89116 Anks6-202ENSMUST00000107747 3980 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Vti1aO89116 Nr1d2-201ENSMUST00000090543 4663 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Vti1aO89116 Tmed5-204ENSMUST00000118036 1045 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Vti1aO89116 Bola2-203ENSMUST00000130498 1266 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Vti1aO89116 Arl4aos-201ENSMUST00000135883 748 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Vti1aO89116 Rarb-207ENSMUST00000225921 2756 ntBASIC18.76■□□□□ 0.59
Vti1aO89116 9330111N05Rik-202ENSMUST00000181043 2449 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Vti1aO89116 Ddx39b-203ENSMUST00000173731 2848 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Vti1aO89116 Picalm-206ENSMUST00000207484 8209 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
Vti1aO89116 Zbtb5-204ENSMUST00000180217 4708 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
Vti1aO89116 Ccdc102a-201ENSMUST00000077955 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Vti1aO89116 Tmf1-201ENSMUST00000095664 5732 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Vti1aO89116 Tekt1-201ENSMUST00000021155 1447 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Vti1aO89116 Acp5-204ENSMUST00000213815 1419 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
Vti1aO89116 Acp5-206ENSMUST00000217643 1447 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
Vti1aO89116 U2af2-202ENSMUST00000165399 1810 ntTSL 5 BASIC18.75■□□□□ 0.59
Vti1aO89116 0610010K14Rik-207ENSMUST00000108577 659 ntTSL 5 BASIC18.75■□□□□ 0.59
Vti1aO89116 Cdpf1-204ENSMUST00000144067 761 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
Vti1aO89116 Ddah2-204ENSMUST00000174493 1254 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Vti1aO89116 Gm3764-209ENSMUST00000181550 1093 ntTSL 3 BASIC18.75■□□□□ 0.59
Vti1aO89116 Gas1-201ENSMUST00000065086 2961 ntAPPRIS ALT2 BASIC18.75■□□□□ 0.59
Vti1aO89116 Dixdc1-207ENSMUST00000121634 2420 ntTSL 5 BASIC18.75■□□□□ 0.59
Vti1aO89116 Dexi-203ENSMUST00000184863 2537 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
Vti1aO89116 Fbxo7-203ENSMUST00000120344 1655 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Vti1aO89116 Tsc22d1-201ENSMUST00000022587 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Vti1aO89116 Slc29a1-201ENSMUST00000051574 1996 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
Vti1aO89116 Ldlrad4-201ENSMUST00000063775 2493 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Vti1aO89116 Mtch2-205ENSMUST00000136872 2596 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Vti1aO89116 Trim54-201ENSMUST00000013771 1434 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Vti1aO89116 Map7-201ENSMUST00000020173 4252 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Vti1aO89116 Ankle1-202ENSMUST00000120725 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Vti1aO89116 Ncmap-205ENSMUST00000105860 2000 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Vti1aO89116 Dmrt2-201ENSMUST00000053068 2347 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Vti1aO89116 Nhs-201ENSMUST00000081569 4881 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
Vti1aO89116 Fbxw5-201ENSMUST00000015239 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Vti1aO89116 Vsig10-201ENSMUST00000086464 2052 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 24.2 ms