Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Trim54-201ENSMUST00000013771 1434 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.33
Chd3B1AR17 4933428G20Rik-201ENSMUST00000056955 1425 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Chd3B1AR17 Pced1a-202ENSMUST00000110277 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Chd3B1AR17 Ift74-201ENSMUST00000030311 2139 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
Chd3B1AR17 1700018L02Rik-201ENSMUST00000187897 2485 ntBASIC17.08■□□□□ 0.32
Chd3B1AR17 Adgrv1-207ENSMUST00000128585 2580 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Chd3B1AR17 Zfp706-201ENSMUST00000078976 4417 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Chd3B1AR17 Clasp2-204ENSMUST00000213663 2727 ntTSL 5 BASIC17.08■□□□□ 0.32
Chd3B1AR17 Etnk1-204ENSMUST00000205256 2647 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Chd3B1AR17 Rac1-202ENSMUST00000100489 2325 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Chd3B1AR17 Hikeshi-206ENSMUST00000153470 2224 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Chd3B1AR17 Praf2-201ENSMUST00000033489 1339 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Chd3B1AR17 Gm17661-201ENSMUST00000170317 270 ntBASIC17.08■□□□□ 0.32
Chd3B1AR17 Ipmk-201ENSMUST00000079252 5447 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
Chd3B1AR17 Camkk2-211ENSMUST00000200109 2751 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
Chd3B1AR17 Odf2-211ENSMUST00000113767 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Chd3B1AR17 Carmn-201ENSMUST00000181155 1778 ntTSL 2 BASIC17.07■□□□□ 0.32
Chd3B1AR17 Ccdc105-201ENSMUST00000105383 1714 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Chd3B1AR17 Plac9a-201ENSMUST00000052286 1555 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Chd3B1AR17 1700024G13Rik-201ENSMUST00000100723 850 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Chd3B1AR17 Lyzl4-202ENSMUST00000120918 959 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Chd3B1AR17 H2afz-207ENSMUST00000174561 810 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Chd3B1AR17 Stk11-210ENSMUST00000213772 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Chd3B1AR17 4930465K10Rik-201ENSMUST00000056675 1238 ntBASIC17.07■□□□□ 0.32
Chd3B1AR17 Nkx2-9-201ENSMUST00000072631 1264 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Chd3B1AR17 Gm8994-201ENSMUST00000077886 1236 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
Chd3B1AR17 Zfp524-201ENSMUST00000086349 1142 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Chd3B1AR17 Herpud2-201ENSMUST00000008573 2781 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Chd3B1AR17 Sec24b-201ENSMUST00000001079 5128 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Chd3B1AR17 Ccdc149-201ENSMUST00000059428 3295 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
Chd3B1AR17 Tmem185a-201ENSMUST00000101506 2429 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Chd3B1AR17 Cobll1-202ENSMUST00000102726 5031 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
Chd3B1AR17 Cobll1-203ENSMUST00000112429 5045 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
Chd3B1AR17 Hoxb2-201ENSMUST00000100523 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Chd3B1AR17 Eva1c-202ENSMUST00000099543 1554 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Chd3B1AR17 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
Chd3B1AR17 Stam2-202ENSMUST00000127316 1928 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Chd3B1AR17 Fam98a-201ENSMUST00000112507 2817 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Chd3B1AR17 Pabpc1l2b-ps-201ENSMUST00000124538 690 ntBASIC17.06■□□□□ 0.32
Chd3B1AR17 Gm26938-201ENSMUST00000182839 744 ntAPPRIS P1 TSL 3 BASIC17.06■□□□□ 0.32
Chd3B1AR17 Npw-201ENSMUST00000095544 638 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Chd3B1AR17 Card10-203ENSMUST00000170584 3220 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
Chd3B1AR17 Aurkb-201ENSMUST00000021277 1950 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Chd3B1AR17 Lhx6-208ENSMUST00000148852 1481 ntTSL 5 BASIC17.06■□□□□ 0.32
Chd3B1AR17 Gm7854-202ENSMUST00000187409 1433 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Chd3B1AR17 Nespas-203ENSMUST00000151472 2248 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Chd3B1AR17 Ccnd3-202ENSMUST00000171031 2113 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
Chd3B1AR17 Ano10-206ENSMUST00000216670 2108 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Chd3B1AR17 Donson-201ENSMUST00000023682 2360 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Chd3B1AR17 Plxdc1-202ENSMUST00000107564 619 ntTSL 2 BASIC17.06■□□□□ 0.32
Chd3B1AR17 Mdfi-203ENSMUST00000113280 1281 ntTSL 5 BASIC17.06■□□□□ 0.32
Chd3B1AR17 D3Ertd751e-205ENSMUST00000120167 773 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
Chd3B1AR17 Gm42477-201ENSMUST00000202427 469 ntTSL 3 BASIC17.06■□□□□ 0.32
Chd3B1AR17 Dut-201ENSMUST00000051605 1950 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Chd3B1AR17 Snx16-202ENSMUST00000099223 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Chd3B1AR17 Tgfb1-201ENSMUST00000002678 2175 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Chd3B1AR17 Tyw5-209ENSMUST00000162686 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Chd3B1AR17 Camsap3-212ENSMUST00000208240 2572 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Chd3B1AR17 Nsmf-204ENSMUST00000102931 2830 ntTSL 5 BASIC17.05■□□□□ 0.32
Chd3B1AR17 Rfesd-202ENSMUST00000167271 595 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
Chd3B1AR17 Grtp1-204ENSMUST00000209691 1030 ntTSL 5 BASIC17.05■□□□□ 0.32
Chd3B1AR17 Cadps-202ENSMUST00000112657 5455 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
Chd3B1AR17 Tlk2-201ENSMUST00000015107 3212 ntAPPRIS P3 TSL 5 BASIC17.05■□□□□ 0.32
Chd3B1AR17 Ctbp2-201ENSMUST00000033269 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Chd3B1AR17 Spata18-202ENSMUST00000071077 1978 ntAPPRIS P2 TSL 5 BASIC17.05■□□□□ 0.32
Chd3B1AR17 Trim25-202ENSMUST00000100627 1433 ntTSL 5 BASIC17.05■□□□□ 0.32
Chd3B1AR17 Serinc2-201ENSMUST00000105996 1878 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
Chd3B1AR17 Mafg-202ENSMUST00000106180 732 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
Chd3B1AR17 Mafg-204ENSMUST00000106182 1104 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
Chd3B1AR17 Hilpda-202ENSMUST00000115289 658 ntAPPRIS P1 TSL 3 BASIC17.05■□□□□ 0.32
Chd3B1AR17 AC134329.2-201ENSMUST00000217897 428 ntBASIC17.05■□□□□ 0.32
Chd3B1AR17 Krt13-201ENSMUST00000007275 1654 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Chd3B1AR17 Insm1-201ENSMUST00000089257 3100 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
Chd3B1AR17 Podxl2-201ENSMUST00000038409 1994 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
Chd3B1AR17 Cds2-202ENSMUST00000103181 8396 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Chd3B1AR17 Fam129c-208ENSMUST00000143662 2267 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
Chd3B1AR17 Mrps18c-203ENSMUST00000112901 820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Chd3B1AR17 Cenps-207ENSMUST00000177408 689 ntTSL 2 BASIC17.04■□□□□ 0.32
Chd3B1AR17 Tsr3-201ENSMUST00000063574 1192 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Chd3B1AR17 Zscan12-201ENSMUST00000053293 2270 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Chd3B1AR17 Tm9sf2-203ENSMUST00000171318 1494 ntTSL 5 BASIC17.03■□□□□ 0.32
Chd3B1AR17 Gm1673-202ENSMUST00000114382 451 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
Chd3B1AR17 Cyp4f41-ps-201ENSMUST00000126790 1077 ntBASIC17.03■□□□□ 0.32
Chd3B1AR17 Fbxo9-203ENSMUST00000159099 1201 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Chd3B1AR17 Gm18101-201ENSMUST00000215769 548 ntBASIC17.03■□□□□ 0.32
Chd3B1AR17 Ythdc1-203ENSMUST00000120498 3269 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
Chd3B1AR17 Ppp2r1b-206ENSMUST00000175645 1931 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
Chd3B1AR17 Gpat3-203ENSMUST00000112887 3059 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Chd3B1AR17 4930448E22Rik-201ENSMUST00000181712 1581 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Chd3B1AR17 Arhgap23-202ENSMUST00000107601 5450 ntTSL 5 BASIC17.03■□□□□ 0.32
Chd3B1AR17 Ddx39b-203ENSMUST00000173731 2848 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Chd3B1AR17 Krt15-201ENSMUST00000107411 1700 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Chd3B1AR17 Gapdh-202ENSMUST00000117757 1273 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Chd3B1AR17 Gm38282-201ENSMUST00000192751 695 ntTSL 5 BASIC17.03■□□□□ 0.32
Chd3B1AR17 Pagr1a-202ENSMUST00000200948 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Chd3B1AR17 Gm42742-205ENSMUST00000202798 1412 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Chd3B1AR17 Gm43791-201ENSMUST00000202914 468 ntTSL 5 BASIC17.03■□□□□ 0.32
Chd3B1AR17 Gm9745-201ENSMUST00000021573 684 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
Chd3B1AR17 Snrnp48-201ENSMUST00000091641 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Chd3B1AR17 Cdk10-201ENSMUST00000036880 1642 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 19.2 ms