Protein–RNA interactions for Protein: Q4QRL3

Ccdc88b, Coiled-coil domain-containing protein 88B, mousemouse

Predictions only

Length 1,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88bQ4QRL3 Olfr988-202ENSMUST00000111597 1702 ntAPPRIS P1 TSL 3 BASIC6.05□□□□□ -1.44
Ccdc88bQ4QRL3 Xirp2-202ENSMUST00000112347 11979 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
Ccdc88bQ4QRL3 Cp-201ENSMUST00000003714 4092 ntAPPRIS ALT2 TSL 1 (best) BASIC6.05□□□□□ -1.44
Ccdc88bQ4QRL3 Gm43881-201ENSMUST00000203051 2530 ntBASIC6.05□□□□□ -1.44
Ccdc88bQ4QRL3 Gm44860-201ENSMUST00000208473 2346 ntBASIC6.05□□□□□ -1.44
Ccdc88bQ4QRL3 Macc1-201ENSMUST00000048880 3818 ntAPPRIS P1 TSL 5 BASIC6.05□□□□□ -1.44
Ccdc88bQ4QRL3 Gm4064-201ENSMUST00000187482 1561 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
Ccdc88bQ4QRL3 3110080E11Rik-201ENSMUST00000210736 3477 ntBASIC6.05□□□□□ -1.44
Ccdc88bQ4QRL3 Cbll1-201ENSMUST00000064240 3937 ntAPPRIS ALT1 TSL 5 BASIC6.04□□□□□ -1.44
Ccdc88bQ4QRL3 Mir676-201ENSMUST00000102443 89 ntBASIC6.04□□□□□ -1.44
Ccdc88bQ4QRL3 Gm26045-201ENSMUST00000157862 97 ntBASIC6.04□□□□□ -1.44
Ccdc88bQ4QRL3 Gm8267-202ENSMUST00000169062 1240 ntAPPRIS P2 TSL 5 BASIC6.04□□□□□ -1.44
Ccdc88bQ4QRL3 4933438B17Rik-202ENSMUST00000196374 576 ntTSL 3 BASIC6.04□□□□□ -1.44
Ccdc88bQ4QRL3 Gm33093-201ENSMUST00000197751 790 ntTSL 5 BASIC6.04□□□□□ -1.44
Ccdc88bQ4QRL3 Gm45425-201ENSMUST00000211727 618 ntTSL 2 BASIC6.04□□□□□ -1.44
Ccdc88bQ4QRL3 Gm18228-201ENSMUST00000217297 1091 ntBASIC6.04□□□□□ -1.44
Ccdc88bQ4QRL3 AC122840.3-201ENSMUST00000221474 486 ntTSL 5 BASIC6.04□□□□□ -1.44
Ccdc88bQ4QRL3 AC166369.1-201ENSMUST00000228126 351 ntBASIC6.04□□□□□ -1.44
Ccdc88bQ4QRL3 P2ry10-201ENSMUST00000053375 2888 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
Ccdc88bQ4QRL3 Ccdc73-201ENSMUST00000111114 3944 ntAPPRIS P1 TSL 5 BASIC6.04□□□□□ -1.44
Ccdc88bQ4QRL3 Olfr1180-202ENSMUST00000216121 2079 ntAPPRIS P1 TSL 3 BASIC6.04□□□□□ -1.44
Ccdc88bQ4QRL3 Abca12-201ENSMUST00000087268 9137 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
Ccdc88bQ4QRL3 Olfr481-202ENSMUST00000213601 5247 ntAPPRIS P1 TSL 5 BASIC6.04□□□□□ -1.44
Ccdc88bQ4QRL3 Gm42905-201ENSMUST00000196237 1611 ntBASIC6.04□□□□□ -1.44
Ccdc88bQ4QRL3 Gm23697-201ENSMUST00000103897 110 ntBASIC6.03□□□□□ -1.44
Ccdc88bQ4QRL3 Gm12156-201ENSMUST00000119188 554 ntBASIC6.03□□□□□ -1.44
Ccdc88bQ4QRL3 Gm15361-201ENSMUST00000119320 444 ntBASIC6.03□□□□□ -1.44
Ccdc88bQ4QRL3 Gm11448-201ENSMUST00000120427 450 ntBASIC6.03□□□□□ -1.44
Ccdc88bQ4QRL3 4930555B12Rik-201ENSMUST00000135444 283 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
Ccdc88bQ4QRL3 Trim30e-ps1-202ENSMUST00000151294 731 ntBASIC6.03□□□□□ -1.44
Ccdc88bQ4QRL3 Gm8247-202ENSMUST00000178759 375 ntAPPRIS ALT2 TSL 5 BASIC6.03□□□□□ -1.44
Ccdc88bQ4QRL3 Gm35625-202ENSMUST00000211040 266 ntTSL 3 BASIC6.03□□□□□ -1.44
Ccdc88bQ4QRL3 AC122905.1-201ENSMUST00000218181 456 ntTSL 5 BASIC6.03□□□□□ -1.44
Ccdc88bQ4QRL3 CT009711.3-201ENSMUST00000225882 250 ntBASIC6.03□□□□□ -1.44
Ccdc88bQ4QRL3 Mir28a-201ENSMUST00000083560 86 ntBASIC6.03□□□□□ -1.44
Ccdc88bQ4QRL3 9430025C20Rik-201ENSMUST00000068663 2115 ntBASIC6.03□□□□□ -1.44
Ccdc88bQ4QRL3 Olfr1369-ps1-204ENSMUST00000215207 3794 ntAPPRIS P1 TSL 5 BASIC6.03□□□□□ -1.44
Ccdc88bQ4QRL3 AC152981.1-201ENSMUST00000218320 2480 ntBASIC6.03□□□□□ -1.44
Ccdc88bQ4QRL3 Lztfl1-201ENSMUST00000026274 4070 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
Ccdc88bQ4QRL3 Gm43166-201ENSMUST00000202871 4379 ntTSL 5 BASIC6.03□□□□□ -1.44
Ccdc88bQ4QRL3 Gm14050-201ENSMUST00000117052 346 ntBASIC6.02□□□□□ -1.44
Ccdc88bQ4QRL3 Vmn1r-ps126-201ENSMUST00000117681 926 ntBASIC6.02□□□□□ -1.44
Ccdc88bQ4QRL3 Gm11708-201ENSMUST00000119530 832 ntBASIC6.02□□□□□ -1.44
Ccdc88bQ4QRL3 Gm11704-201ENSMUST00000120031 214 ntBASIC6.02□□□□□ -1.44
Ccdc88bQ4QRL3 Gm9435-201ENSMUST00000120379 877 ntBASIC6.02□□□□□ -1.44
Ccdc88bQ4QRL3 Gm3835-201ENSMUST00000120752 403 ntBASIC6.02□□□□□ -1.44
Ccdc88bQ4QRL3 Gm13557-201ENSMUST00000120771 382 ntBASIC6.02□□□□□ -1.44
Ccdc88bQ4QRL3 Gm13508-201ENSMUST00000121639 775 ntBASIC6.02□□□□□ -1.44
Ccdc88bQ4QRL3 Gm11195-201ENSMUST00000135030 441 ntTSL 3 BASIC6.02□□□□□ -1.44
Ccdc88bQ4QRL3 Vmn2r-ps67-201ENSMUST00000172624 385 ntBASIC6.02□□□□□ -1.44
Ccdc88bQ4QRL3 Obox4-ps7-201ENSMUST00000196144 505 ntBASIC6.02□□□□□ -1.44
Ccdc88bQ4QRL3 AC160972.1-201ENSMUST00000220971 644 ntTSL 2 BASIC6.02□□□□□ -1.44
Ccdc88bQ4QRL3 Vmn1r34-205ENSMUST00000227332 3075 ntAPPRIS P1 BASIC6.02□□□□□ -1.44
Ccdc88bQ4QRL3 Gm9765-201ENSMUST00000043170 321 ntBASIC6.02□□□□□ -1.44
Ccdc88bQ4QRL3 Inpp4b-209ENSMUST00000172031 8067 ntAPPRIS ALT2 TSL 5 BASIC6.02□□□□□ -1.45
Ccdc88bQ4QRL3 Vmn1r6-203ENSMUST00000227131 8330 ntAPPRIS P2 BASIC6.02□□□□□ -1.45
Ccdc88bQ4QRL3 Gm35191-201ENSMUST00000200925 2475 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
Ccdc88bQ4QRL3 Gm13310-201ENSMUST00000120962 1381 ntBASIC6.02□□□□□ -1.45
Ccdc88bQ4QRL3 Gm37504-201ENSMUST00000192537 2374 ntBASIC6.02□□□□□ -1.45
Ccdc88bQ4QRL3 Skint4-201ENSMUST00000069769 3367 ntAPPRIS ALT2 TSL 2 BASIC6.02□□□□□ -1.45
Ccdc88bQ4QRL3 Gm38010-201ENSMUST00000192592 2784 ntBASIC6.02□□□□□ -1.45
Ccdc88bQ4QRL3 Vmn1r127-201ENSMUST00000105199 918 ntAPPRIS P1 BASIC6.02□□□□□ -1.45
Ccdc88bQ4QRL3 Gm14816-201ENSMUST00000117174 294 ntBASIC6.02□□□□□ -1.45
Ccdc88bQ4QRL3 Gm11471-201ENSMUST00000121824 198 ntBASIC6.02□□□□□ -1.45
Ccdc88bQ4QRL3 Vmn1r103-201ENSMUST00000163461 918 ntAPPRIS P1 BASIC6.02□□□□□ -1.45
Ccdc88bQ4QRL3 Olfr1295-202ENSMUST00000207786 1043 ntAPPRIS P1 BASIC6.02□□□□□ -1.45
Ccdc88bQ4QRL3 Slfn5os-202ENSMUST00000216469 550 ntTSL 5 BASIC6.02□□□□□ -1.45
Ccdc88bQ4QRL3 CT030254.2-201ENSMUST00000225902 502 ntAPPRIS P1 BASIC6.02□□□□□ -1.45
Ccdc88bQ4QRL3 Olfr799-201ENSMUST00000071126 936 ntAPPRIS P1 BASIC6.02□□□□□ -1.45
Ccdc88bQ4QRL3 Gm43829-201ENSMUST00000196191 3802 ntBASIC6.01□□□□□ -1.45
Ccdc88bQ4QRL3 AC149294.7-201ENSMUST00000227475 1432 ntBASIC6.01□□□□□ -1.45
Ccdc88bQ4QRL3 Olfr575-203ENSMUST00000216420 3500 ntAPPRIS P1 TSL 5 BASIC6.01□□□□□ -1.45
Ccdc88bQ4QRL3 Gm15466-201ENSMUST00000122299 333 ntBASIC6.01□□□□□ -1.45
Ccdc88bQ4QRL3 AI662270-201ENSMUST00000142709 304 ntTSL 2 BASIC6.01□□□□□ -1.45
Ccdc88bQ4QRL3 Gm15946-201ENSMUST00000160654 423 ntBASIC6.01□□□□□ -1.45
Ccdc88bQ4QRL3 Gm3486-201ENSMUST00000169361 883 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
Ccdc88bQ4QRL3 Trbv8-201ENSMUST00000194020 285 ntBASIC6.01□□□□□ -1.45
Ccdc88bQ4QRL3 Gm37587-202ENSMUST00000194935 475 ntTSL 3 BASIC6.01□□□□□ -1.45
Ccdc88bQ4QRL3 2610306O10Rik-201ENSMUST00000206512 612 ntBASIC6.01□□□□□ -1.45
Ccdc88bQ4QRL3 Rps15a-ps1-201ENSMUST00000071120 393 ntBASIC6.01□□□□□ -1.45
Ccdc88bQ4QRL3 Olfr364-ps1-203ENSMUST00000217298 2894 ntAPPRIS P1 TSL 5 BASIC6.01□□□□□ -1.45
Ccdc88bQ4QRL3 Olfr124-202ENSMUST00000215168 4497 ntAPPRIS P1 TSL 5 BASIC6.01□□□□□ -1.45
Ccdc88bQ4QRL3 AC164102.1-201ENSMUST00000220524 1553 ntBASIC6□□□□□ -1.45
Ccdc88bQ4QRL3 AC154634.4-201ENSMUST00000226077 2665 ntBASIC6□□□□□ -1.45
Ccdc88bQ4QRL3 Cep290-206ENSMUST00000219765 7985 ntTSL 5 BASIC6□□□□□ -1.45
Ccdc88bQ4QRL3 Olfr1101-202ENSMUST00000214411 3235 ntAPPRIS P1 TSL 3 BASIC6□□□□□ -1.45
Ccdc88bQ4QRL3 Vmn2r-ps130-201ENSMUST00000175853 2568 ntAPPRIS P1 TSL 5 BASIC6□□□□□ -1.45
Ccdc88bQ4QRL3 Olfr298-202ENSMUST00000213223 3273 ntAPPRIS P1 TSL 5 BASIC6□□□□□ -1.45
Ccdc88bQ4QRL3 Zfp62-212ENSMUST00000180016 3964 ntAPPRIS P1 TSL 5 BASIC6□□□□□ -1.45
Ccdc88bQ4QRL3 Trbv19-201ENSMUST00000103276 566 ntAPPRIS P1 BASIC6□□□□□ -1.45
Ccdc88bQ4QRL3 Gm26254-201ENSMUST00000122491 118 ntBASIC6□□□□□ -1.45
Ccdc88bQ4QRL3 1700013N06Rik-201ENSMUST00000156376 663 ntTSL 5 BASIC6□□□□□ -1.45
Ccdc88bQ4QRL3 Gm24402-201ENSMUST00000157873 91 ntBASIC6□□□□□ -1.45
Ccdc88bQ4QRL3 Gm28263-201ENSMUST00000185884 400 ntBASIC6□□□□□ -1.45
Ccdc88bQ4QRL3 Gm28072-202ENSMUST00000190486 352 ntTSL 5 BASIC6□□□□□ -1.45
Ccdc88bQ4QRL3 CT009754.1-201ENSMUST00000223489 558 ntTSL 3 BASIC6□□□□□ -1.45
Ccdc88bQ4QRL3 Snord35b-201ENSMUST00000082833 87 ntBASIC6□□□□□ -1.45
Ccdc88bQ4QRL3 Rpl26-ps2-201ENSMUST00000085379 435 ntBASIC6□□□□□ -1.45
Ccdc88bQ4QRL3 Cfhr1-201ENSMUST00000023965 1793 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
Ccdc88bQ4QRL3 Cyp3a25-201ENSMUST00000068317 2000 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
Retrieved 100 of 76,532 protein–RNA pairs in 75.9 ms