Protein–RNA interactions for Protein: Q4QRL3

Ccdc88b, Coiled-coil domain-containing protein 88B, mousemouse

Predictions only

Length 1,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88bQ4QRL3 AC154618.1-201ENSMUST00000227451 303 ntBASIC6.09□□□□□ -1.44
Ccdc88bQ4QRL3 AC080021.1-201ENSMUST00000228104 700 ntBASIC6.09□□□□□ -1.44
Ccdc88bQ4QRL3 AC133283.1-201ENSMUST00000228443 859 ntBASIC6.09□□□□□ -1.44
Ccdc88bQ4QRL3 Cst12-201ENSMUST00000028932 644 ntAPPRIS ALT2 TSL 1 (best) BASIC6.09□□□□□ -1.44
Ccdc88bQ4QRL3 Olfr1151-201ENSMUST00000061081 927 ntAPPRIS P1 BASIC6.09□□□□□ -1.44
Ccdc88bQ4QRL3 Rps17-201ENSMUST00000080813 494 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.44
Ccdc88bQ4QRL3 Gm10161-201ENSMUST00000091506 204 ntBASIC6.09□□□□□ -1.44
Ccdc88bQ4QRL3 Olfr17-202ENSMUST00000210568 3666 ntAPPRIS P1 TSL 5 BASIC6.08□□□□□ -1.44
Ccdc88bQ4QRL3 Glcci1-206ENSMUST00000162567 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC6.08□□□□□ -1.44
Ccdc88bQ4QRL3 Spc25-201ENSMUST00000005365 1352 ntAPPRIS ALT2 TSL 1 (best) BASIC6.08□□□□□ -1.44
Ccdc88bQ4QRL3 Gm35755-201ENSMUST00000222392 2077 ntBASIC6.08□□□□□ -1.44
Ccdc88bQ4QRL3 Ano5-201ENSMUST00000043944 7785 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
Ccdc88bQ4QRL3 Cnot1-202ENSMUST00000098473 8390 ntAPPRIS P1 TSL 5 BASIC6.08□□□□□ -1.44
Ccdc88bQ4QRL3 Cfh-203ENSMUST00000111977 4100 ntAPPRIS ALT2 TSL 1 (best) BASIC6.08□□□□□ -1.44
Ccdc88bQ4QRL3 Zfp426-208ENSMUST00000166005 1653 ntAPPRIS P3 TSL 5 BASIC6.08□□□□□ -1.44
Ccdc88bQ4QRL3 Olfr1323-202ENSMUST00000213463 3717 ntAPPRIS P1 TSL 5 BASIC6.08□□□□□ -1.44
Ccdc88bQ4QRL3 Gm19744-204ENSMUST00000188936 4533 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
Ccdc88bQ4QRL3 Mup-ps10-201ENSMUST00000119626 556 ntBASIC6.08□□□□□ -1.44
Ccdc88bQ4QRL3 Gm13459-201ENSMUST00000121558 646 ntBASIC6.08□□□□□ -1.44
Ccdc88bQ4QRL3 Tarbp2-207ENSMUST00000142114 420 ntTSL 5 BASIC6.08□□□□□ -1.44
Ccdc88bQ4QRL3 1700129C05Rik-204ENSMUST00000162674 566 ntAPPRIS ALT2 TSL 3 BASIC6.08□□□□□ -1.44
Ccdc88bQ4QRL3 Gm43475-201ENSMUST00000196673 400 ntTSL 2 BASIC6.08□□□□□ -1.44
Ccdc88bQ4QRL3 Olfr1309-201ENSMUST00000207885 964 ntBASIC6.08□□□□□ -1.44
Ccdc88bQ4QRL3 Gm6991-201ENSMUST00000218475 1178 ntBASIC6.08□□□□□ -1.44
Ccdc88bQ4QRL3 AC124746.2-201ENSMUST00000226594 427 ntBASIC6.08□□□□□ -1.44
Ccdc88bQ4QRL3 Snord15a-201ENSMUST00000083888 148 ntBASIC6.08□□□□□ -1.44
Ccdc88bQ4QRL3 Olfr1456-ps1-201ENSMUST00000087769 518 ntBASIC6.08□□□□□ -1.44
Ccdc88bQ4QRL3 Zfp945-205ENSMUST00000160457 6497 ntAPPRIS P4 TSL 1 (best) BASIC6.08□□□□□ -1.44
Ccdc88bQ4QRL3 4921501E09Rik-201ENSMUST00000024121 3916 ntAPPRIS P1 BASIC6.08□□□□□ -1.44
Ccdc88bQ4QRL3 Fgf14-202ENSMUST00000095529 3608 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
Ccdc88bQ4QRL3 Olfr213-202ENSMUST00000220008 4020 ntAPPRIS P1 TSL 5 BASIC6.07□□□□□ -1.44
Ccdc88bQ4QRL3 Zan-204ENSMUST00000164178 16451 ntAPPRIS P1 TSL 5 BASIC6.07□□□□□ -1.44
Ccdc88bQ4QRL3 Igsf10-202ENSMUST00000193455 8484 ntAPPRIS P1 TSL 5 BASIC6.07□□□□□ -1.44
Ccdc88bQ4QRL3 Olfr1461-202ENSMUST00000207113 3481 ntAPPRIS P1 TSL 2 BASIC6.07□□□□□ -1.44
Ccdc88bQ4QRL3 Gm6367-201ENSMUST00000178646 2464 ntAPPRIS P1 TSL 5 BASIC6.07□□□□□ -1.44
Ccdc88bQ4QRL3 Gm12465-201ENSMUST00000118591 300 ntBASIC6.07□□□□□ -1.44
Ccdc88bQ4QRL3 Olfr397-201ENSMUST00000121280 1091 ntAPPRIS P1 BASIC6.07□□□□□ -1.44
Ccdc88bQ4QRL3 Gm14101-201ENSMUST00000121502 473 ntBASIC6.07□□□□□ -1.44
Ccdc88bQ4QRL3 Mir3070b-201ENSMUST00000175205 89 ntBASIC6.07□□□□□ -1.44
Ccdc88bQ4QRL3 Mgst1-208ENSMUST00000204628 471 ntTSL 3 BASIC6.07□□□□□ -1.44
Ccdc88bQ4QRL3 Gm35857-201ENSMUST00000212739 178 ntBASIC6.07□□□□□ -1.44
Ccdc88bQ4QRL3 Gm5649-201ENSMUST00000217918 951 ntBASIC6.07□□□□□ -1.44
Ccdc88bQ4QRL3 AC138290.1-201ENSMUST00000219242 820 ntTSL 5 BASIC6.07□□□□□ -1.44
Ccdc88bQ4QRL3 Gm40884-201ENSMUST00000223505 541 ntTSL 3 BASIC6.07□□□□□ -1.44
Ccdc88bQ4QRL3 Olfr661-201ENSMUST00000098168 964 ntAPPRIS P1 BASIC6.07□□□□□ -1.44
Ccdc88bQ4QRL3 2810474O19Rik-208ENSMUST00000189837 5469 ntAPPRIS ALT2 TSL 1 (best) BASIC6.07□□□□□ -1.44
Ccdc88bQ4QRL3 1810006J02Rik-201ENSMUST00000186473 1687 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
Ccdc88bQ4QRL3 Gm14305-202ENSMUST00000108981 1646 ntAPPRIS P1 TSL 2 BASIC6.06□□□□□ -1.44
Ccdc88bQ4QRL3 4930415L06Rik-201ENSMUST00000088146 2617 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
Ccdc88bQ4QRL3 Nsd1-201ENSMUST00000099490 12784 ntAPPRIS P1 TSL 5 BASIC6.06□□□□□ -1.44
Ccdc88bQ4QRL3 Olfr357-202ENSMUST00000213218 5367 ntAPPRIS P1 TSL 5 BASIC6.06□□□□□ -1.44
Ccdc88bQ4QRL3 Igkv3-7-201ENSMUST00000103399 299 ntAPPRIS P1 BASIC6.06□□□□□ -1.44
Ccdc88bQ4QRL3 Gm3543-201ENSMUST00000111870 899 ntAPPRIS P1 TSL 3 BASIC6.06□□□□□ -1.44
Ccdc88bQ4QRL3 Cldn34d-201ENSMUST00000114054 1003 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
Ccdc88bQ4QRL3 Olfr406-201ENSMUST00000133561 1101 ntAPPRIS P1 BASIC6.06□□□□□ -1.44
Ccdc88bQ4QRL3 Gm17036-201ENSMUST00000168187 254 ntTSL 3 BASIC6.06□□□□□ -1.44
Ccdc88bQ4QRL3 Gm29139-201ENSMUST00000185794 248 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
Ccdc88bQ4QRL3 Gm33973-201ENSMUST00000195148 534 ntBASIC6.06□□□□□ -1.44
Ccdc88bQ4QRL3 Gm44674-201ENSMUST00000206159 415 ntTSL 3 BASIC6.06□□□□□ -1.44
Ccdc88bQ4QRL3 Gm45498-201ENSMUST00000210346 283 ntBASIC6.06□□□□□ -1.44
Ccdc88bQ4QRL3 AC100590.2-201ENSMUST00000219028 215 ntBASIC6.06□□□□□ -1.44
Ccdc88bQ4QRL3 AF357428-201ENSMUST00000083815 69 ntBASIC6.06□□□□□ -1.44
Ccdc88bQ4QRL3 Olfr1197-201ENSMUST00000099815 945 ntAPPRIS P1 BASIC6.06□□□□□ -1.44
Ccdc88bQ4QRL3 Olfr211-202ENSMUST00000203700 4880 ntAPPRIS P1 TSL 2 BASIC6.06□□□□□ -1.44
Ccdc88bQ4QRL3 Zbtb20-204ENSMUST00000114694 26901 ntAPPRIS P3 TSL 5 BASIC6.06□□□□□ -1.44
Ccdc88bQ4QRL3 Tfpi-204ENSMUST00000111714 3614 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
Ccdc88bQ4QRL3 Kctd4-201ENSMUST00000050120 3998 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
Ccdc88bQ4QRL3 Gm20775-201ENSMUST00000100115 1851 ntBASIC6.05□□□□□ -1.44
Ccdc88bQ4QRL3 Slfn8-201ENSMUST00000038141 4011 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
Ccdc88bQ4QRL3 AC153948.1-201ENSMUST00000219080 3838 ntBASIC6.05□□□□□ -1.44
Ccdc88bQ4QRL3 Nlrp9a-204ENSMUST00000122040 2850 ntAPPRIS ALT2 TSL 1 (best) BASIC6.05□□□□□ -1.44
Ccdc88bQ4QRL3 Mcmdc2-204ENSMUST00000140948 3249 ntTSL 5 BASIC6.05□□□□□ -1.44
Ccdc88bQ4QRL3 Ccr9-205ENSMUST00000180093 4239 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
Ccdc88bQ4QRL3 Gm24068-201ENSMUST00000104513 132 ntBASIC6.05□□□□□ -1.44
Ccdc88bQ4QRL3 Gm12543-201ENSMUST00000120410 543 ntBASIC6.05□□□□□ -1.44
Ccdc88bQ4QRL3 Gm15387-201ENSMUST00000120421 648 ntBASIC6.05□□□□□ -1.44
Ccdc88bQ4QRL3 Gm12005-201ENSMUST00000121451 379 ntBASIC6.05□□□□□ -1.44
Ccdc88bQ4QRL3 n-R5s179-201ENSMUST00000122564 118 ntBASIC6.05□□□□□ -1.44
Ccdc88bQ4QRL3 4930503B20Rik-203ENSMUST00000149825 970 ntAPPRIS ALT2 TSL 1 (best) BASIC6.05□□□□□ -1.44
Ccdc88bQ4QRL3 2610001J05Rik-202ENSMUST00000155856 1077 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
Ccdc88bQ4QRL3 Hmgb1-ps7-201ENSMUST00000173370 648 ntBASIC6.05□□□□□ -1.44
Ccdc88bQ4QRL3 Gm26607-201ENSMUST00000180661 867 ntBASIC6.05□□□□□ -1.44
Ccdc88bQ4QRL3 Gm7656-201ENSMUST00000182468 1004 ntBASIC6.05□□□□□ -1.44
Ccdc88bQ4QRL3 Mir6938-201ENSMUST00000184173 63 ntBASIC6.05□□□□□ -1.44
Ccdc88bQ4QRL3 Gm29320-201ENSMUST00000185235 615 ntBASIC6.05□□□□□ -1.44
Ccdc88bQ4QRL3 Gm29179-202ENSMUST00000186138 615 ntBASIC6.05□□□□□ -1.44
Ccdc88bQ4QRL3 Gm28598-201ENSMUST00000186490 615 ntBASIC6.05□□□□□ -1.44
Ccdc88bQ4QRL3 Gm29448-201ENSMUST00000186675 615 ntBASIC6.05□□□□□ -1.44
Ccdc88bQ4QRL3 Gm29314-201ENSMUST00000186800 615 ntBASIC6.05□□□□□ -1.44
Ccdc88bQ4QRL3 Gm28253-202ENSMUST00000187971 615 ntBASIC6.05□□□□□ -1.44
Ccdc88bQ4QRL3 Gm29268-201ENSMUST00000188669 615 ntBASIC6.05□□□□□ -1.44
Ccdc88bQ4QRL3 Gm29169-201ENSMUST00000189835 615 ntBASIC6.05□□□□□ -1.44
Ccdc88bQ4QRL3 Gm28978-201ENSMUST00000191120 615 ntBASIC6.05□□□□□ -1.44
Ccdc88bQ4QRL3 Gm37172-201ENSMUST00000191926 615 ntBASIC6.05□□□□□ -1.44
Ccdc88bQ4QRL3 Gm42825-201ENSMUST00000198883 723 ntTSL 2 BASIC6.05□□□□□ -1.44
Ccdc88bQ4QRL3 AC142499.1-201ENSMUST00000220036 374 ntBASIC6.05□□□□□ -1.44
Ccdc88bQ4QRL3 AC107453.2-201ENSMUST00000227714 655 ntBASIC6.05□□□□□ -1.44
Ccdc88bQ4QRL3 Olfr943-201ENSMUST00000071617 1079 ntAPPRIS P2 TSL 3 BASIC6.05□□□□□ -1.44
Ccdc88bQ4QRL3 Olfr1465-201ENSMUST00000080142 924 ntAPPRIS P1 BASIC6.05□□□□□ -1.44
Ccdc88bQ4QRL3 Gm5518-201ENSMUST00000084171 648 ntBASIC6.05□□□□□ -1.44
Retrieved 100 of 76,532 protein–RNA pairs in 352 ms