Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Gm46424-201ENSMUST00000221567 168 ntBASIC6.58□□□□□ -1.36
Rnf40Q3U319 AC129202.3-201ENSMUST00000224413 733 ntBASIC6.58□□□□□ -1.36
Rnf40Q3U319 AC154380.1-201ENSMUST00000226804 720 ntBASIC6.58□□□□□ -1.36
Rnf40Q3U319 Defa26-201ENSMUST00000074343 372 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
Rnf40Q3U319 Rpl27a-ps1-201ENSMUST00000075382 448 ntBASIC6.58□□□□□ -1.36
Rnf40Q3U319 Gm23845-201ENSMUST00000083834 152 ntBASIC6.58□□□□□ -1.36
Rnf40Q3U319 Gm18913-201ENSMUST00000204311 1789 ntBASIC6.58□□□□□ -1.36
Rnf40Q3U319 CT009757.4-201ENSMUST00000221520 2541 ntBASIC6.58□□□□□ -1.36
Rnf40Q3U319 Erap1-201ENSMUST00000169114 5644 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
Rnf40Q3U319 Kcnma1-208ENSMUST00000177634 4605 ntTSL 5 BASIC6.58□□□□□ -1.36
Rnf40Q3U319 Vmn1r32-202ENSMUST00000227014 2661 ntAPPRIS P1 BASIC6.58□□□□□ -1.36
Rnf40Q3U319 Mfap3-203ENSMUST00000108849 4827 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
Rnf40Q3U319 Gm3286-203ENSMUST00000201629 1945 ntAPPRIS P3 TSL 3 BASIC6.58□□□□□ -1.36
Rnf40Q3U319 Olfr1295-203ENSMUST00000217772 5539 ntAPPRIS P1 TSL 5 BASIC6.58□□□□□ -1.36
Rnf40Q3U319 Gm44175-201ENSMUST00000204863 4256 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
Rnf40Q3U319 Unc13c-201ENSMUST00000075245 6633 ntAPPRIS P1 TSL 5 BASIC6.58□□□□□ -1.36
Rnf40Q3U319 AC123858.1-201ENSMUST00000226948 1874 ntBASIC6.58□□□□□ -1.36
Rnf40Q3U319 Vmn2r97-201ENSMUST00000168710 2586 ntAPPRIS P1 TSL 5 BASIC6.58□□□□□ -1.36
Rnf40Q3U319 Gm43682-201ENSMUST00000202150 2090 ntBASIC6.57□□□□□ -1.36
Rnf40Q3U319 Gp6-202ENSMUST00000206928 5900 ntAPPRIS P2 TSL 1 (best) BASIC6.57□□□□□ -1.36
Rnf40Q3U319 Gm43281-201ENSMUST00000202522 2704 ntBASIC6.57□□□□□ -1.36
Rnf40Q3U319 AC159896.3-201ENSMUST00000215904 3835 ntBASIC6.57□□□□□ -1.36
Rnf40Q3U319 Bche-201ENSMUST00000029367 6210 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
Rnf40Q3U319 Dmxl1-201ENSMUST00000041772 12247 ntAPPRIS ALT2 TSL 5 BASIC6.57□□□□□ -1.36
Rnf40Q3U319 Gpr22-203ENSMUST00000176710 1772 ntAPPRIS P1 TSL 5 BASIC6.57□□□□□ -1.36
Rnf40Q3U319 Gm37831-201ENSMUST00000191685 1787 ntBASIC6.57□□□□□ -1.36
Rnf40Q3U319 Ercc6l-201ENSMUST00000056904 5302 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
Rnf40Q3U319 Kat6b-ps1-201ENSMUST00000187624 3433 ntBASIC6.57□□□□□ -1.36
Rnf40Q3U319 Gm25083-201ENSMUST00000102319 92 ntBASIC6.57□□□□□ -1.36
Rnf40Q3U319 Ifna14-201ENSMUST00000102808 570 ntAPPRIS P1 BASIC6.57□□□□□ -1.36
Rnf40Q3U319 Gm24173-201ENSMUST00000104130 128 ntBASIC6.57□□□□□ -1.36
Rnf40Q3U319 Gm3033-201ENSMUST00000112792 438 ntAPPRIS P1 TSL 5 BASIC6.57□□□□□ -1.36
Rnf40Q3U319 Olfr626-ps1-201ENSMUST00000121147 318 ntBASIC6.57□□□□□ -1.36
Rnf40Q3U319 Gm24997-201ENSMUST00000157910 105 ntBASIC6.57□□□□□ -1.36
Rnf40Q3U319 Gm24860-201ENSMUST00000158457 276 ntBASIC6.57□□□□□ -1.36
Rnf40Q3U319 Gm21999-201ENSMUST00000165985 387 ntBASIC6.57□□□□□ -1.36
Rnf40Q3U319 Olfr92-201ENSMUST00000168659 939 ntAPPRIS P1 BASIC6.57□□□□□ -1.36
Rnf40Q3U319 Gm17907-201ENSMUST00000173150 710 ntBASIC6.57□□□□□ -1.36
Rnf40Q3U319 Mir3112-201ENSMUST00000175431 82 ntBASIC6.57□□□□□ -1.36
Rnf40Q3U319 Gm20615-201ENSMUST00000177503 705 ntBASIC6.57□□□□□ -1.36
Rnf40Q3U319 Pfdn6-206ENSMUST00000179418 514 ntAPPRIS P1 TSL 3 BASIC6.57□□□□□ -1.36
Rnf40Q3U319 D630011A20Rik-201ENSMUST00000180858 500 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
Rnf40Q3U319 Mir7084-201ENSMUST00000183876 70 ntBASIC6.57□□□□□ -1.36
Rnf40Q3U319 Gm3121-201ENSMUST00000187086 406 ntBASIC6.57□□□□□ -1.36
Rnf40Q3U319 Gm29350-201ENSMUST00000189141 541 ntBASIC6.57□□□□□ -1.36
Rnf40Q3U319 Gm42566-201ENSMUST00000197120 643 ntBASIC6.57□□□□□ -1.36
Rnf40Q3U319 Gm45823-201ENSMUST00000212714 515 ntTSL 5 BASIC6.57□□□□□ -1.36
Rnf40Q3U319 Gm45722-201ENSMUST00000213075 466 ntBASIC6.57□□□□□ -1.36
Rnf40Q3U319 AC131660.1-201ENSMUST00000215630 1062 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
Rnf40Q3U319 Gm40932-202ENSMUST00000221315 511 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
Rnf40Q3U319 AC091783.2-201ENSMUST00000224626 740 ntBASIC6.57□□□□□ -1.36
Rnf40Q3U319 Gm22358-201ENSMUST00000082877 122 ntBASIC6.57□□□□□ -1.36
Rnf40Q3U319 Gm22293-201ENSMUST00000083314 109 ntBASIC6.57□□□□□ -1.36
Rnf40Q3U319 Gm26164-201ENSMUST00000083793 104 ntBASIC6.57□□□□□ -1.36
Rnf40Q3U319 Gm25188-201ENSMUST00000083913 122 ntBASIC6.57□□□□□ -1.36
Rnf40Q3U319 AC121870.1-201ENSMUST00000216279 4879 ntBASIC6.57□□□□□ -1.36
Rnf40Q3U319 Slfn8-206ENSMUST00000215239 2930 ntTSL 5 BASIC6.57□□□□□ -1.36
Rnf40Q3U319 4930529C04Rik-201ENSMUST00000131367 3534 ntBASIC6.57□□□□□ -1.36
Rnf40Q3U319 Gm37864-201ENSMUST00000195308 3075 ntBASIC6.57□□□□□ -1.36
Rnf40Q3U319 Pls3-203ENSMUST00000114058 3032 ntTSL 5 BASIC6.57□□□□□ -1.36
Rnf40Q3U319 Nqo2-202ENSMUST00000058978 3842 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
Rnf40Q3U319 Vmn2r113-201ENSMUST00000170322 2571 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
Rnf40Q3U319 Mettl4-201ENSMUST00000171284 2150 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
Rnf40Q3U319 Olfr992-202ENSMUST00000213749 2150 ntAPPRIS P1 TSL 5 BASIC6.57□□□□□ -1.36
Rnf40Q3U319 Vmn2r-ps159-201ENSMUST00000074107 2716 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
Rnf40Q3U319 Adam6b-201ENSMUST00000063317 2547 ntAPPRIS P1 BASIC6.56□□□□□ -1.36
Rnf40Q3U319 Vmn1r90-206ENSMUST00000227566 6901 ntAPPRIS ALT2 BASIC6.56□□□□□ -1.36
Rnf40Q3U319 Gm18701-201ENSMUST00000188281 1536 ntBASIC6.56□□□□□ -1.36
Rnf40Q3U319 Baz2b-202ENSMUST00000112550 7895 ntAPPRIS P1 TSL 5 BASIC6.56□□□□□ -1.36
Rnf40Q3U319 Nxf7-202ENSMUST00000113163 2233 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
Rnf40Q3U319 Slc22a28-201ENSMUST00000065651 2004 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
Rnf40Q3U319 Akap11-202ENSMUST00000123853 9364 ntAPPRIS P3 TSL 5 BASIC6.56□□□□□ -1.36
Rnf40Q3U319 Gm25498-201ENSMUST00000104424 129 ntBASIC6.56□□□□□ -1.36
Rnf40Q3U319 Snord98-201ENSMUST00000116819 65 ntBASIC6.56□□□□□ -1.36
Rnf40Q3U319 Spink8-201ENSMUST00000118732 637 ntAPPRIS ALT2 TSL 1 (best) BASIC6.56□□□□□ -1.36
Rnf40Q3U319 Gm13430-201ENSMUST00000121366 288 ntBASIC6.56□□□□□ -1.36
Rnf40Q3U319 Smt3h2-ps4-201ENSMUST00000121569 288 ntBASIC6.56□□□□□ -1.36
Rnf40Q3U319 Gm14246-201ENSMUST00000155173 680 ntTSL 3 BASIC6.56□□□□□ -1.36
Rnf40Q3U319 Gm22948-201ENSMUST00000158561 243 ntBASIC6.56□□□□□ -1.36
Rnf40Q3U319 AI480526-201ENSMUST00000159072 957 ntTSL 2 BASIC6.56□□□□□ -1.36
Rnf40Q3U319 Ulbp1-201ENSMUST00000169796 1093 ntAPPRIS ALT2 TSL 1 (best) BASIC6.56□□□□□ -1.36
Rnf40Q3U319 Vmn2r-ps65-201ENSMUST00000173309 220 ntBASIC6.56□□□□□ -1.36
Rnf40Q3U319 Rpl48-ps1-201ENSMUST00000177147 556 ntBASIC6.56□□□□□ -1.36
Rnf40Q3U319 Gm17045-201ENSMUST00000178600 844 ntBASIC6.56□□□□□ -1.36
Rnf40Q3U319 Gm28967-201ENSMUST00000187351 281 ntBASIC6.56□□□□□ -1.36
Rnf40Q3U319 Gm8009-201ENSMUST00000191672 436 ntBASIC6.56□□□□□ -1.36
Rnf40Q3U319 Gm42623-201ENSMUST00000197225 379 ntBASIC6.56□□□□□ -1.36
Rnf40Q3U319 Gm31305-202ENSMUST00000200435 761 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
Rnf40Q3U319 Olfr1481-ps1-201ENSMUST00000207312 134 ntBASIC6.56□□□□□ -1.36
Rnf40Q3U319 Gm45200-201ENSMUST00000207434 919 ntBASIC6.56□□□□□ -1.36
Rnf40Q3U319 AC122486.1-201ENSMUST00000221562 196 ntTSL 2 BASIC6.56□□□□□ -1.36
Rnf40Q3U319 CT009718.4-201ENSMUST00000221881 109 ntBASIC6.56□□□□□ -1.36
Rnf40Q3U319 AC174797.2-203ENSMUST00000224017 716 ntBASIC6.56□□□□□ -1.36
Rnf40Q3U319 Tpbpa-202ENSMUST00000225275 642 ntAPPRIS ALT2 BASIC6.56□□□□□ -1.36
Rnf40Q3U319 Gm22744-201ENSMUST00000083444 65 ntBASIC6.56□□□□□ -1.36
Rnf40Q3U319 Gm25207-201ENSMUST00000093745 107 ntBASIC6.56□□□□□ -1.36
Rnf40Q3U319 Epyc-202ENSMUST00000105285 2539 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
Rnf40Q3U319 Iqca-201ENSMUST00000113094 3210 ntAPPRIS P2 TSL 5 BASIC6.56□□□□□ -1.36
Rnf40Q3U319 Tdrkh-207ENSMUST00000197901 2652 ntAPPRIS P2 TSL 5 BASIC6.56□□□□□ -1.36
Rnf40Q3U319 Robo2-203ENSMUST00000117785 8124 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
Retrieved 100 of 76,532 protein–RNA pairs in 75.5 ms