Protein–RNA interactions for Protein: Q78JW9

Ubfd1, Ubiquitin domain-containing protein UBFD1, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubfd1Q78JW9 Gm42704-201ENSMUST00000196875 1778 ntBASIC4.75□□□□□ -1.65
Ubfd1Q78JW9 Clec5a-202ENSMUST00000101491 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC4.75□□□□□ -1.65
Ubfd1Q78JW9 Olfr1226-203ENSMUST00000215562 2669 ntAPPRIS P1 TSL 5 BASIC4.75□□□□□ -1.65
Ubfd1Q78JW9 AC152414.1-201ENSMUST00000218784 2287 ntTSL 5 BASIC4.75□□□□□ -1.65
Ubfd1Q78JW9 AC155922.2-201ENSMUST00000220240 1458 ntTSL 5 BASIC4.75□□□□□ -1.65
Ubfd1Q78JW9 Olfr1279-203ENSMUST00000216697 3385 ntAPPRIS ALT1 TSL 5 BASIC4.74□□□□□ -1.65
Ubfd1Q78JW9 Olfr1290-204ENSMUST00000217611 2729 ntAPPRIS P1 TSL 3 BASIC4.74□□□□□ -1.65
Ubfd1Q78JW9 Dmxl2-202ENSMUST00000118600 9465 ntAPPRIS ALT2 TSL 5 BASIC4.74□□□□□ -1.65
Ubfd1Q78JW9 Btbd35f21-201ENSMUST00000105017 1943 ntAPPRIS P1 BASIC4.74□□□□□ -1.65
Ubfd1Q78JW9 Btbd35f27-201ENSMUST00000178143 1943 ntAPPRIS P1 BASIC4.74□□□□□ -1.65
Ubfd1Q78JW9 Btbd35f2-201ENSMUST00000179991 1949 ntAPPRIS P1 BASIC4.74□□□□□ -1.65
Ubfd1Q78JW9 Btbd35f16-201ENSMUST00000185755 1949 ntAPPRIS P1 BASIC4.74□□□□□ -1.65
Ubfd1Q78JW9 Rgs21-202ENSMUST00000184189 1674 ntAPPRIS P1 TSL 5 BASIC4.74□□□□□ -1.65
Ubfd1Q78JW9 Sirpb1a-201ENSMUST00000099201 1419 ntAPPRIS ALT2 TSL 5 BASIC4.74□□□□□ -1.65
Ubfd1Q78JW9 Gm44535-201ENSMUST00000208889 3136 ntBASIC4.74□□□□□ -1.65
Ubfd1Q78JW9 Vmn1r35-205ENSMUST00000227961 1789 ntBASIC4.74□□□□□ -1.65
Ubfd1Q78JW9 Rnf2-204ENSMUST00000187048 3201 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
Ubfd1Q78JW9 Gm22272-201ENSMUST00000104039 134 ntBASIC4.74□□□□□ -1.65
Ubfd1Q78JW9 Mir466f-3-201ENSMUST00000104788 94 ntBASIC4.74□□□□□ -1.65
Ubfd1Q78JW9 Mir190b-201ENSMUST00000104803 80 ntBASIC4.74□□□□□ -1.65
Ubfd1Q78JW9 Gm16106-201ENSMUST00000119187 294 ntBASIC4.74□□□□□ -1.65
Ubfd1Q78JW9 Gm11896-201ENSMUST00000121105 820 ntBASIC4.74□□□□□ -1.65
Ubfd1Q78JW9 Gm15591-201ENSMUST00000138539 627 ntTSL 5 BASIC4.74□□□□□ -1.65
Ubfd1Q78JW9 Gm26034-201ENSMUST00000158154 116 ntBASIC4.74□□□□□ -1.65
Ubfd1Q78JW9 4930556I23Rik-201ENSMUST00000160659 560 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
Ubfd1Q78JW9 Gm17669-201ENSMUST00000163749 465 ntAPPRIS P1 BASIC4.74□□□□□ -1.65
Ubfd1Q78JW9 Gm17153-201ENSMUST00000171314 490 ntBASIC4.74□□□□□ -1.65
Ubfd1Q78JW9 Vmn1r-ps79-201ENSMUST00000173508 963 ntBASIC4.74□□□□□ -1.65
Ubfd1Q78JW9 Vmn1r-ps70-201ENSMUST00000173675 963 ntBASIC4.74□□□□□ -1.65
Ubfd1Q78JW9 Vmn1r-ps65-201ENSMUST00000174235 951 ntBASIC4.74□□□□□ -1.65
Ubfd1Q78JW9 Gm24925-201ENSMUST00000178157 107 ntBASIC4.74□□□□□ -1.65
Ubfd1Q78JW9 Gm6900-201ENSMUST00000178971 342 ntBASIC4.74□□□□□ -1.65
Ubfd1Q78JW9 Gm26828-201ENSMUST00000180640 172 ntBASIC4.74□□□□□ -1.65
Ubfd1Q78JW9 4933440J02Rik-201ENSMUST00000181547 1144 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
Ubfd1Q78JW9 Mir1957b-201ENSMUST00000184608 123 ntBASIC4.74□□□□□ -1.65
Ubfd1Q78JW9 Mrgprc1-ps-201ENSMUST00000185552 952 ntBASIC4.74□□□□□ -1.65
Ubfd1Q78JW9 Gm29263-201ENSMUST00000188718 463 ntBASIC4.74□□□□□ -1.65
Ubfd1Q78JW9 Gm43731-201ENSMUST00000196150 666 ntTSL 3 BASIC4.74□□□□□ -1.65
Ubfd1Q78JW9 Gm42428-201ENSMUST00000198677 302 ntBASIC4.74□□□□□ -1.65
Ubfd1Q78JW9 Gm18691-201ENSMUST00000203593 872 ntBASIC4.74□□□□□ -1.65
Ubfd1Q78JW9 Gm44816-201ENSMUST00000206666 477 ntBASIC4.74□□□□□ -1.65
Ubfd1Q78JW9 Gm39232-201ENSMUST00000210760 1012 ntTSL 5 BASIC4.74□□□□□ -1.65
Ubfd1Q78JW9 AC153954.2-201ENSMUST00000213811 287 ntBASIC4.74□□□□□ -1.65
Ubfd1Q78JW9 AC123705.4-201ENSMUST00000222411 493 ntTSL 3 BASIC4.74□□□□□ -1.65
Ubfd1Q78JW9 AL662807.1-201ENSMUST00000224183 126 ntBASIC4.74□□□□□ -1.65
Ubfd1Q78JW9 Dppa3-201ENSMUST00000049644 833 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
Ubfd1Q78JW9 Olfr1205-201ENSMUST00000076438 924 ntAPPRIS P1 BASIC4.74□□□□□ -1.65
Ubfd1Q78JW9 Olfr996-201ENSMUST00000077075 1068 ntAPPRIS P1 BASIC4.74□□□□□ -1.65
Ubfd1Q78JW9 Olfr346-201ENSMUST00000078854 930 ntAPPRIS P1 BASIC4.74□□□□□ -1.65
Ubfd1Q78JW9 Gm24166-201ENSMUST00000082724 135 ntBASIC4.74□□□□□ -1.65
Ubfd1Q78JW9 Gm24928-201ENSMUST00000083399 107 ntBASIC4.74□□□□□ -1.65
Ubfd1Q78JW9 Gm25897-201ENSMUST00000083709 107 ntBASIC4.74□□□□□ -1.65
Ubfd1Q78JW9 Olfr1141-201ENSMUST00000099846 936 ntAPPRIS P1 BASIC4.74□□□□□ -1.65
Ubfd1Q78JW9 Olfr1049-201ENSMUST00000099899 953 ntAPPRIS P1 BASIC4.74□□□□□ -1.65
Ubfd1Q78JW9 5430403G16Rik-201ENSMUST00000092720 3341 ntAPPRIS P1 TSL 5 BASIC4.74□□□□□ -1.65
Ubfd1Q78JW9 Olfr495-202ENSMUST00000215215 2460 ntAPPRIS P1 TSL 5 BASIC4.74□□□□□ -1.65
Ubfd1Q78JW9 Gm19301-201ENSMUST00000174283 2210 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
Ubfd1Q78JW9 Gm35629-201ENSMUST00000209684 2241 ntBASIC4.74□□□□□ -1.65
Ubfd1Q78JW9 Emcn-201ENSMUST00000119475 1357 ntAPPRIS P3 TSL 1 (best) BASIC4.74□□□□□ -1.65
Ubfd1Q78JW9 Gm38278-201ENSMUST00000194715 1365 ntBASIC4.74□□□□□ -1.65
Ubfd1Q78JW9 Olfr1438-ps1-201ENSMUST00000208398 4761 ntAPPRIS P1 TSL 5 BASIC4.74□□□□□ -1.65
Ubfd1Q78JW9 Gm4541-201ENSMUST00000208901 1848 ntBASIC4.74□□□□□ -1.65
Ubfd1Q78JW9 Arrdc3-205ENSMUST00000161441 1908 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
Ubfd1Q78JW9 Gm4064-201ENSMUST00000187482 1561 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
Ubfd1Q78JW9 Olfr134-202ENSMUST00000215900 1670 ntAPPRIS P1 TSL 5 BASIC4.73□□□□□ -1.65
Ubfd1Q78JW9 Gm37180-201ENSMUST00000195335 2819 ntBASIC4.73□□□□□ -1.65
Ubfd1Q78JW9 Vmn2r4-201ENSMUST00000170280 2484 ntAPPRIS P2 TSL 5 BASIC4.73□□□□□ -1.65
Ubfd1Q78JW9 Lrp1b-209ENSMUST00000185258 1874 ntTSL 5 BASIC4.73□□□□□ -1.65
Ubfd1Q78JW9 Olfr147-202ENSMUST00000214648 5356 ntAPPRIS ALT2 TSL 2 BASIC4.73□□□□□ -1.65
Ubfd1Q78JW9 AC103672.3-201ENSMUST00000227649 3243 ntBASIC4.73□□□□□ -1.65
Ubfd1Q78JW9 Zfp758-203ENSMUST00000121315 2860 ntAPPRIS P3 TSL 1 (best) BASIC4.73□□□□□ -1.65
Ubfd1Q78JW9 Zfp788-202ENSMUST00000098508 3775 ntAPPRIS P5 TSL 1 (best) BASIC4.73□□□□□ -1.65
Ubfd1Q78JW9 Gm29506-201ENSMUST00000191045 2078 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
Ubfd1Q78JW9 Gm42483-201ENSMUST00000197556 1742 ntBASIC4.73□□□□□ -1.65
Ubfd1Q78JW9 Zscan4a-201ENSMUST00000210573 2279 ntBASIC4.73□□□□□ -1.65
Ubfd1Q78JW9 Olfr1387-202ENSMUST00000214541 4840 ntAPPRIS P1 TSL 5 BASIC4.73□□□□□ -1.65
Ubfd1Q78JW9 Mir208b-201ENSMUST00000104735 77 ntBASIC4.73□□□□□ -1.65
Ubfd1Q78JW9 Gm14393-202ENSMUST00000109066 564 ntTSL 2 BASIC4.73□□□□□ -1.65
Ubfd1Q78JW9 Vps29-203ENSMUST00000118765 713 ntTSL 3 BASIC4.73□□□□□ -1.65
Ubfd1Q78JW9 Gm12974-201ENSMUST00000129875 333 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
Ubfd1Q78JW9 Gm26490-201ENSMUST00000157879 140 ntBASIC4.73□□□□□ -1.65
Ubfd1Q78JW9 Gm22940-201ENSMUST00000158560 155 ntBASIC4.73□□□□□ -1.65
Ubfd1Q78JW9 Gm7346-201ENSMUST00000169661 476 ntBASIC4.73□□□□□ -1.65
Ubfd1Q78JW9 Pid1-206ENSMUST00000176822 1119 ntTSL 2 BASIC4.73□□□□□ -1.65
Ubfd1Q78JW9 Gm18828-202ENSMUST00000181035 310 ntBASIC4.73□□□□□ -1.65
Ubfd1Q78JW9 1700016P04Rik-201ENSMUST00000186770 429 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
Ubfd1Q78JW9 Gm18181-201ENSMUST00000190670 736 ntBASIC4.73□□□□□ -1.65
Ubfd1Q78JW9 Gm8939-201ENSMUST00000192577 964 ntBASIC4.73□□□□□ -1.65
Ubfd1Q78JW9 Gm37979-201ENSMUST00000193065 712 ntBASIC4.73□□□□□ -1.65
Ubfd1Q78JW9 Gm18752-202ENSMUST00000193627 587 ntTSL 3 BASIC4.73□□□□□ -1.65
Ubfd1Q78JW9 Igkv12-47-201ENSMUST00000196961 356 ntBASIC4.73□□□□□ -1.65
Ubfd1Q78JW9 Tprkb-208ENSMUST00000200680 814 ntAPPRIS P1 TSL 3 BASIC4.73□□□□□ -1.65
Ubfd1Q78JW9 Gm34583-202ENSMUST00000202537 451 ntTSL 2 BASIC4.73□□□□□ -1.65
Ubfd1Q78JW9 Gm44259-201ENSMUST00000204996 298 ntBASIC4.73□□□□□ -1.65
Ubfd1Q78JW9 Gm45593-201ENSMUST00000211415 752 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
Ubfd1Q78JW9 Kcnj1-203ENSMUST00000213393 1277 ntAPPRIS P1 TSL 5 BASIC4.73□□□□□ -1.65
Ubfd1Q78JW9 Gm18252-203ENSMUST00000215855 757 ntBASIC4.73□□□□□ -1.65
Ubfd1Q78JW9 AC109180.1-201ENSMUST00000218676 398 ntBASIC4.73□□□□□ -1.65
Ubfd1Q78JW9 1700042O05Rik-201ENSMUST00000219017 584 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
Ubfd1Q78JW9 Olfr57-201ENSMUST00000082244 1080 ntAPPRIS P1 BASIC4.73□□□□□ -1.65
Retrieved 100 of 76,532 protein–RNA pairs in 62.5 ms