Protein–RNA interactions for Protein: Q9QXK7

Cpsf3, Cleavage and polyadenylation specificity factor subunit 3, mousemouse

Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf3Q9QXK7 Bmp6-201ENSMUST00000171970 3593 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Cpsf3Q9QXK7 Nfs1-201ENSMUST00000029147 2051 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Cpsf3Q9QXK7 Dock9-202ENSMUST00000100299 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Cpsf3Q9QXK7 Atp8b2-201ENSMUST00000069805 5559 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
Cpsf3Q9QXK7 Mag-207ENSMUST00000191081 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Cpsf3Q9QXK7 Grk2-202ENSMUST00000088737 3376 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Cpsf3Q9QXK7 Gm42939-201ENSMUST00000197514 2205 ntBASIC18.82■□□□□ 0.6
Cpsf3Q9QXK7 Gm15408-201ENSMUST00000124198 1379 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Cpsf3Q9QXK7 Serinc2-201ENSMUST00000105996 1878 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
Cpsf3Q9QXK7 Zfp282-201ENSMUST00000061890 5573 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Cpsf3Q9QXK7 Spock1-201ENSMUST00000172326 1320 ntAPPRIS P3 TSL 5 BASIC18.82■□□□□ 0.6
Cpsf3Q9QXK7 Bnc2-214ENSMUST00000176612 3963 ntTSL 5 BASIC18.82■□□□□ 0.6
Cpsf3Q9QXK7 Camsap3-212ENSMUST00000208240 2572 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Cpsf3Q9QXK7 Lifr-202ENSMUST00000164529 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Cpsf3Q9QXK7 Itgb5-202ENSMUST00000115028 3090 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Cpsf3Q9QXK7 Ctnnal1-202ENSMUST00000107612 850 ntTSL 3 BASIC18.82■□□□□ 0.6
Cpsf3Q9QXK7 Mpz-202ENSMUST00000111334 1278 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Cpsf3Q9QXK7 Smim14-202ENSMUST00000121661 1056 ntAPPRIS P1 TSL 3 BASIC18.82■□□□□ 0.6
Cpsf3Q9QXK7 Ubtf-207ENSMUST00000128016 1062 ntTSL 2 BASIC18.82■□□□□ 0.6
Cpsf3Q9QXK7 2210408F21Rik-204ENSMUST00000136571 478 ntTSL 3 BASIC18.82■□□□□ 0.6
Cpsf3Q9QXK7 Nsl1-203ENSMUST00000139340 837 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Cpsf3Q9QXK7 Sct-202ENSMUST00000167790 507 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
Cpsf3Q9QXK7 Fau-203ENSMUST00000179142 736 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Cpsf3Q9QXK7 2310001K24Rik-202ENSMUST00000186760 740 ntTSL 2 BASIC18.82■□□□□ 0.6
Cpsf3Q9QXK7 Gm38027-201ENSMUST00000192315 235 ntBASIC18.82■□□□□ 0.6
Cpsf3Q9QXK7 Ccnd2-204ENSMUST00000201637 1006 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Cpsf3Q9QXK7 Lysmd2-201ENSMUST00000034702 1189 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Cpsf3Q9QXK7 Grhpr-201ENSMUST00000045078 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Cpsf3Q9QXK7 Sct-201ENSMUST00000046156 534 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Cpsf3Q9QXK7 Cebpg-201ENSMUST00000070191 914 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
Cpsf3Q9QXK7 Osbpl1a-207ENSMUST00000121808 3030 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Cpsf3Q9QXK7 Mbd6-202ENSMUST00000119078 4287 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Cpsf3Q9QXK7 Efnb2-201ENSMUST00000001319 4793 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Cpsf3Q9QXK7 Smim15-205ENSMUST00000225972 2097 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
Cpsf3Q9QXK7 Cpsf4-207ENSMUST00000162244 1387 ntAPPRIS P4 TSL 1 (best) BASIC18.81■□□□□ 0.6
Cpsf3Q9QXK7 Prss33-201ENSMUST00000059906 1360 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Cpsf3Q9QXK7 Lcorl-202ENSMUST00000045586 5708 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Cpsf3Q9QXK7 Aida-206ENSMUST00000193625 1810 ntTSL 3 BASIC18.81■□□□□ 0.6
Cpsf3Q9QXK7 Khdrbs2-201ENSMUST00000027226 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Cpsf3Q9QXK7 Gm43272-201ENSMUST00000200599 1584 ntBASIC18.81■□□□□ 0.6
Cpsf3Q9QXK7 Meox1-201ENSMUST00000057054 2228 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Cpsf3Q9QXK7 Adcy2-201ENSMUST00000022013 4211 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Cpsf3Q9QXK7 Galnt1-206ENSMUST00000170243 4108 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Cpsf3Q9QXK7 Echdc2-204ENSMUST00000116309 1238 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Cpsf3Q9QXK7 Calu-208ENSMUST00000173694 611 ntTSL 5 BASIC18.81■□□□□ 0.6
Cpsf3Q9QXK7 AC135963.1-201ENSMUST00000211640 717 ntBASIC18.81■□□□□ 0.6
Cpsf3Q9QXK7 4933406B15Rik-201ENSMUST00000220065 1182 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Cpsf3Q9QXK7 Gpr180-201ENSMUST00000022728 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Cpsf3Q9QXK7 Myrip-201ENSMUST00000048121 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Cpsf3Q9QXK7 Prpsap1-201ENSMUST00000106391 1841 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Cpsf3Q9QXK7 Pex11b-202ENSMUST00000118557 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Cpsf3Q9QXK7 Sox12-201ENSMUST00000063332 4169 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
Cpsf3Q9QXK7 Larp1b-202ENSMUST00000048490 2354 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Cpsf3Q9QXK7 Ola1-201ENSMUST00000028517 2175 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Cpsf3Q9QXK7 Sapcd2-202ENSMUST00000100323 1761 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
Cpsf3Q9QXK7 Shisa7-203ENSMUST00000119433 3481 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Cpsf3Q9QXK7 Gm15565-201ENSMUST00000118890 427 ntBASIC18.8■□□□□ 0.6
Cpsf3Q9QXK7 Utf1-201ENSMUST00000168457 1227 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Cpsf3Q9QXK7 Cib1-207ENSMUST00000206084 772 ntTSL 3 BASIC18.8■□□□□ 0.6
Cpsf3Q9QXK7 Casp3-203ENSMUST00000210534 583 ntTSL 5 BASIC18.8■□□□□ 0.6
Cpsf3Q9QXK7 Cib1-202ENSMUST00000071457 702 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Cpsf3Q9QXK7 Gm16712-201ENSMUST00000181962 1960 ntTSL 2 BASIC18.8■□□□□ 0.6
Cpsf3Q9QXK7 Tbc1d9-202ENSMUST00000093393 5334 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Cpsf3Q9QXK7 Lysmd4-209ENSMUST00000208998 2110 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Cpsf3Q9QXK7 Nipsnap3b-201ENSMUST00000015391 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Cpsf3Q9QXK7 Opa3-202ENSMUST00000161711 1390 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
Cpsf3Q9QXK7 Paqr7-201ENSMUST00000081525 2351 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Cpsf3Q9QXK7 Rragd-201ENSMUST00000029946 5055 ntTSL 5 BASIC18.79■□□□□ 0.6
Cpsf3Q9QXK7 Polr1c-201ENSMUST00000087026 1314 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Cpsf3Q9QXK7 Large1-202ENSMUST00000119826 4647 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
Cpsf3Q9QXK7 Tfeb-203ENSMUST00000113284 1974 ntTSL 5 BASIC18.79■□□□□ 0.6
Cpsf3Q9QXK7 Atxn2-201ENSMUST00000051950 4472 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Cpsf3Q9QXK7 Tsfm-202ENSMUST00000120547 1271 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Cpsf3Q9QXK7 Gm12979-201ENSMUST00000145488 405 ntTSL 2 BASIC18.79■□□□□ 0.6
Cpsf3Q9QXK7 Rps2-ps2-201ENSMUST00000194305 881 ntBASIC18.79■□□□□ 0.6
Cpsf3Q9QXK7 Btg1-202ENSMUST00000218953 668 ntTSL 2 BASIC18.79■□□□□ 0.6
Cpsf3Q9QXK7 Nkd1-201ENSMUST00000034086 3035 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Cpsf3Q9QXK7 Tmem125-201ENSMUST00000060214 1864 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
Cpsf3Q9QXK7 Pdx1-201ENSMUST00000085591 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Cpsf3Q9QXK7 Gm10461-201ENSMUST00000202073 4786 ntBASIC18.79■□□□□ 0.6
Cpsf3Q9QXK7 Bend4-204ENSMUST00000201972 8268 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
Cpsf3Q9QXK7 Wtap-205ENSMUST00000160781 2442 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Cpsf3Q9QXK7 Ctsh-201ENSMUST00000034915 1617 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Cpsf3Q9QXK7 Map6-206ENSMUST00000208605 2275 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Cpsf3Q9QXK7 Cds2-202ENSMUST00000103181 8396 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Cpsf3Q9QXK7 Gm11273-201ENSMUST00000044043 390 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
Cpsf3Q9QXK7 Zfp219-204ENSMUST00000226522 2804 ntAPPRIS P2 BASIC18.78■□□□□ 0.6
Cpsf3Q9QXK7 Dlg1-205ENSMUST00000115201 3248 ntTSL 5 BASIC18.78■□□□□ 0.6
Cpsf3Q9QXK7 Spsb4-201ENSMUST00000055433 2720 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Cpsf3Q9QXK7 Racgap1-213ENSMUST00000171702 3052 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Cpsf3Q9QXK7 Dlk2-202ENSMUST00000166280 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Cpsf3Q9QXK7 Igsf9b-201ENSMUST00000115247 2857 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Cpsf3Q9QXK7 Zdhhc16-201ENSMUST00000026154 1821 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Cpsf3Q9QXK7 Trim14-201ENSMUST00000046897 1429 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Cpsf3Q9QXK7 Vangl2-203ENSMUST00000111264 2349 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Cpsf3Q9QXK7 Adam15-203ENSMUST00000107446 1686 ntTSL 5 BASIC18.77■□□□□ 0.6
Cpsf3Q9QXK7 Sap18-201ENSMUST00000111267 660 ntTSL 2 BASIC18.77■□□□□ 0.6
Cpsf3Q9QXK7 Tfg-202ENSMUST00000121554 716 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
Cpsf3Q9QXK7 2210408F21Rik-211ENSMUST00000151800 750 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Cpsf3Q9QXK7 Arl2-201ENSMUST00000025893 1144 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 48.6 ms