Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Tmem44-204ENSMUST00000140402 2405 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trim54Q9ERP3 Cers1-202ENSMUST00000140239 2711 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trim54Q9ERP3 Aire-204ENSMUST00000128241 1938 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trim54Q9ERP3 Aire-205ENSMUST00000130972 1923 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trim54Q9ERP3 Aire-212ENSMUST00000145975 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trim54Q9ERP3 Aire-201ENSMUST00000019257 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trim54Q9ERP3 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trim54Q9ERP3 Col4a3bp-202ENSMUST00000109444 5285 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Trim54Q9ERP3 Cutc-202ENSMUST00000112047 1233 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trim54Q9ERP3 Pdcd5-202ENSMUST00000120714 767 ntTSL 3 BASIC18.91■□□□□ 0.62
Trim54Q9ERP3 Ccdc125-202ENSMUST00000170347 1216 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trim54Q9ERP3 Gm6728-201ENSMUST00000178117 1065 ntBASIC18.91■□□□□ 0.62
Trim54Q9ERP3 Gm7791-201ENSMUST00000219066 539 ntBASIC18.91■□□□□ 0.62
Trim54Q9ERP3 Inmt-201ENSMUST00000003569 1077 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trim54Q9ERP3 Birc5-201ENSMUST00000081387 947 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trim54Q9ERP3 Igfbpl1-201ENSMUST00000044297 2864 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trim54Q9ERP3 Mpdu1-201ENSMUST00000018905 1321 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trim54Q9ERP3 Kdm1a-202ENSMUST00000105847 3028 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
Trim54Q9ERP3 Papola-212ENSMUST00000168186 2436 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Trim54Q9ERP3 Sapcd2-202ENSMUST00000100323 1761 ntAPPRIS ALT2 TSL 2 BASIC18.91■□□□□ 0.62
Trim54Q9ERP3 Gtf3a-201ENSMUST00000132102 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trim54Q9ERP3 Csf3-201ENSMUST00000038886 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trim54Q9ERP3 Bhlhe22-201ENSMUST00000026120 3344 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
Trim54Q9ERP3 Gm15645-201ENSMUST00000131504 2208 ntTSL 5 BASIC18.9■□□□□ 0.62
Trim54Q9ERP3 Cops8-201ENSMUST00000036153 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trim54Q9ERP3 Htra3-202ENSMUST00000114233 1901 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Trim54Q9ERP3 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC18.9■□□□□ 0.62
Trim54Q9ERP3 Pgf-204ENSMUST00000223220 2080 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trim54Q9ERP3 Psmd13-209ENSMUST00000164681 726 ntTSL 5 BASIC18.9■□□□□ 0.62
Trim54Q9ERP3 4930544I03Rik-201ENSMUST00000181184 1276 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Trim54Q9ERP3 Gm45442-201ENSMUST00000210038 411 ntTSL 3 BASIC18.9■□□□□ 0.62
Trim54Q9ERP3 Eif1a-202ENSMUST00000168382 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trim54Q9ERP3 Tha1-201ENSMUST00000033230 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trim54Q9ERP3 Cacul1-201ENSMUST00000081790 5790 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trim54Q9ERP3 Nup85-201ENSMUST00000021085 2230 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trim54Q9ERP3 Nfix-204ENSMUST00000109764 5476 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Trim54Q9ERP3 Mtss1l-201ENSMUST00000052457 4717 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trim54Q9ERP3 Cdc14b-201ENSMUST00000039318 5859 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trim54Q9ERP3 Prmt6-201ENSMUST00000106567 2450 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
Trim54Q9ERP3 Coq5-201ENSMUST00000040421 2037 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trim54Q9ERP3 Usp36-202ENSMUST00000106296 5655 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.62
Trim54Q9ERP3 Eif4g3-201ENSMUST00000058133 2663 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
Trim54Q9ERP3 Gm6093-201ENSMUST00000221792 1623 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
Trim54Q9ERP3 Igsf8-202ENSMUST00000085912 2182 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.62
Trim54Q9ERP3 Gfi1-201ENSMUST00000031205 2860 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trim54Q9ERP3 Tra2a-204ENSMUST00000204189 1777 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trim54Q9ERP3 Jag1-201ENSMUST00000028735 5612 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trim54Q9ERP3 AA467197-202ENSMUST00000110512 751 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trim54Q9ERP3 Gm22697-201ENSMUST00000175194 63 ntBASIC18.89■□□□□ 0.61
Trim54Q9ERP3 Gm10459-201ENSMUST00000202708 1155 ntBASIC18.89■□□□□ 0.61
Trim54Q9ERP3 Lsm10-201ENSMUST00000055575 943 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trim54Q9ERP3 Zfp524-201ENSMUST00000086349 1142 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trim54Q9ERP3 Psme3-201ENSMUST00000019470 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trim54Q9ERP3 Ripk2-201ENSMUST00000037035 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trim54Q9ERP3 0610040J01Rik-201ENSMUST00000081747 2008 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trim54Q9ERP3 Sox12-201ENSMUST00000063332 4169 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
Trim54Q9ERP3 Gm11549-201ENSMUST00000124606 2829 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trim54Q9ERP3 Vgf-204ENSMUST00000190827 2834 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trim54Q9ERP3 Krt77-201ENSMUST00000087996 2930 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trim54Q9ERP3 Slc30a4-202ENSMUST00000099457 3170 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Trim54Q9ERP3 Usp36-201ENSMUST00000092382 5609 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
Trim54Q9ERP3 9330171B17Rik-201ENSMUST00000035939 2073 ntBASIC18.88■□□□□ 0.61
Trim54Q9ERP3 Trmt11-201ENSMUST00000019927 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trim54Q9ERP3 Anapc5-218ENSMUST00000200645 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trim54Q9ERP3 Tmem60-201ENSMUST00000115259 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trim54Q9ERP3 Cul4a-202ENSMUST00000121426 1044 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Trim54Q9ERP3 AA414768-201ENSMUST00000121924 1257 ntBASIC18.88■□□□□ 0.61
Trim54Q9ERP3 Gm14453-201ENSMUST00000139677 553 ntTSL 3 BASIC18.88■□□□□ 0.61
Trim54Q9ERP3 Steap1-201ENSMUST00000015796 1230 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trim54Q9ERP3 Flg-203ENSMUST00000178695 777 ntAPPRIS P5 BASIC18.88■□□□□ 0.61
Trim54Q9ERP3 D230030E09Rik-201ENSMUST00000222459 884 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Trim54Q9ERP3 Rgcc-201ENSMUST00000022595 918 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trim54Q9ERP3 Rpl39l-201ENSMUST00000044103 805 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trim54Q9ERP3 Mtch2-205ENSMUST00000136872 2596 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trim54Q9ERP3 Gm26781-201ENSMUST00000181385 1477 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Trim54Q9ERP3 Sbf1-201ENSMUST00000123791 6190 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trim54Q9ERP3 Nos1ap-207ENSMUST00000161966 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trim54Q9ERP3 Map3k7cl-201ENSMUST00000026700 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trim54Q9ERP3 Kctd13-201ENSMUST00000032924 1676 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trim54Q9ERP3 Ptges3l-202ENSMUST00000103102 1463 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trim54Q9ERP3 Mafg-202ENSMUST00000106180 732 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
Trim54Q9ERP3 Mafg-204ENSMUST00000106182 1104 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
Trim54Q9ERP3 Tm6sf2-202ENSMUST00000110160 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trim54Q9ERP3 Galnt1-206ENSMUST00000170243 4108 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trim54Q9ERP3 Gm6345-202ENSMUST00000180900 204 ntBASIC18.87■□□□□ 0.61
Trim54Q9ERP3 Bdkrb1-202ENSMUST00000182899 1313 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
Trim54Q9ERP3 Stk3-201ENSMUST00000018476 2914 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trim54Q9ERP3 Gm37374-201ENSMUST00000194954 1829 ntBASIC18.87■□□□□ 0.61
Trim54Q9ERP3 Gm18101-201ENSMUST00000215769 548 ntBASIC18.87■□□□□ 0.61
Trim54Q9ERP3 Bdkrb1-201ENSMUST00000041229 1338 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
Trim54Q9ERP3 Hspbp1-201ENSMUST00000079970 1593 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trim54Q9ERP3 Rhobtb3-201ENSMUST00000022078 4980 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trim54Q9ERP3 Slit3-201ENSMUST00000069837 5228 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trim54Q9ERP3 Hoxb2-201ENSMUST00000100523 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trim54Q9ERP3 Chmp6-201ENSMUST00000026434 1557 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trim54Q9ERP3 Slc25a16-201ENSMUST00000044977 3145 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trim54Q9ERP3 Mprip-203ENSMUST00000108751 4021 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trim54Q9ERP3 Snx3-202ENSMUST00000105499 1057 ntTSL 5 BASIC18.86■□□□□ 0.61
Trim54Q9ERP3 AC134329.2-201ENSMUST00000217897 428 ntBASIC18.86■□□□□ 0.61
Trim54Q9ERP3 4930465K10Rik-201ENSMUST00000056675 1238 ntBASIC18.86■□□□□ 0.61
Retrieved 100 of 76,532 protein–RNA pairs in 35.3 ms