Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Speg-206ENSMUST00000122266 917 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Lima1Q9ERG0 Ptbp3-204ENSMUST00000140925 606 ntTSL 3 BASIC17.27■□□□□ 0.36
Lima1Q9ERG0 Bhlhb9-201ENSMUST00000068755 2823 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Lima1Q9ERG0 Nadk2-203ENSMUST00000100790 3665 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.35
Lima1Q9ERG0 2210016L21Rik-201ENSMUST00000031538 2607 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Lima1Q9ERG0 5031425F14Rik-201ENSMUST00000127920 2098 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
Lima1Q9ERG0 Cdv3-202ENSMUST00000072249 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
Lima1Q9ERG0 Spc25-202ENSMUST00000112320 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Lima1Q9ERG0 Mon1a-201ENSMUST00000035202 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Lima1Q9ERG0 Rasgrp1-201ENSMUST00000102534 5229 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
Lima1Q9ERG0 Cmtm4-201ENSMUST00000179802 7734 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Lima1Q9ERG0 Gm17484-201ENSMUST00000167899 2322 ntTSL 2 BASIC17.26■□□□□ 0.35
Lima1Q9ERG0 Cnpy1-202ENSMUST00000118882 1984 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Lima1Q9ERG0 Podxl2-201ENSMUST00000038409 1994 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
Lima1Q9ERG0 Tmem145-202ENSMUST00000119703 1781 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
Lima1Q9ERG0 Coro2a-202ENSMUST00000107756 4154 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
Lima1Q9ERG0 B230208B08Rik-201ENSMUST00000173049 404 ntTSL 3 BASIC17.26■□□□□ 0.35
Lima1Q9ERG0 AC133650.2-201ENSMUST00000217036 607 ntTSL 3 BASIC17.26■□□□□ 0.35
Lima1Q9ERG0 Vps53-202ENSMUST00000094015 2645 ntTSL 5 BASIC17.26■□□□□ 0.35
Lima1Q9ERG0 Poglut1-201ENSMUST00000036210 2758 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Lima1Q9ERG0 Rab6a-201ENSMUST00000032946 3214 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
Lima1Q9ERG0 Atp11a-201ENSMUST00000033818 7549 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Lima1Q9ERG0 Lgmn-201ENSMUST00000021607 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Lima1Q9ERG0 Nudt17-204ENSMUST00000200387 2108 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Lima1Q9ERG0 Uso1-201ENSMUST00000031355 3898 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Lima1Q9ERG0 Nfe2l3-201ENSMUST00000005103 2544 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Lima1Q9ERG0 Gpat3-203ENSMUST00000112887 3059 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Lima1Q9ERG0 Arhgef17-204ENSMUST00000209041 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Lima1Q9ERG0 Aipl1-201ENSMUST00000048207 2309 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Lima1Q9ERG0 Nat9-201ENSMUST00000103038 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Lima1Q9ERG0 Gm53-201ENSMUST00000129907 1172 ntTSL 2 BASIC17.25■□□□□ 0.35
Lima1Q9ERG0 Ankrd37-201ENSMUST00000053558 927 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Lima1Q9ERG0 Gm6365-201ENSMUST00000054711 744 ntBASIC17.25■□□□□ 0.35
Lima1Q9ERG0 Syt9-201ENSMUST00000073459 3817 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Lima1Q9ERG0 Etv6-201ENSMUST00000081028 5545 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
Lima1Q9ERG0 Tradd-201ENSMUST00000034359 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Lima1Q9ERG0 Ngly1-201ENSMUST00000022310 2935 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Lima1Q9ERG0 Nagpa-203ENSMUST00000147567 2230 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Lima1Q9ERG0 A430078I02Rik-202ENSMUST00000154066 2233 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Lima1Q9ERG0 Lrch3-211ENSMUST00000170899 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Lima1Q9ERG0 Ifrd2-201ENSMUST00000010192 2056 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Lima1Q9ERG0 Arhgef16-201ENSMUST00000030898 2860 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Lima1Q9ERG0 Mmp28-201ENSMUST00000021020 2311 ntAPPRIS P4 TSL 1 (best) BASIC17.25■□□□□ 0.35
Lima1Q9ERG0 Ntrk1-201ENSMUST00000029712 2588 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Lima1Q9ERG0 Arhgef25-212ENSMUST00000222006 1896 ntTSL 5 BASIC17.24■□□□□ 0.35
Lima1Q9ERG0 Chtop-207ENSMUST00000107346 1321 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Lima1Q9ERG0 Intu-201ENSMUST00000061590 1589 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
Lima1Q9ERG0 Asph-204ENSMUST00000084915 2884 ntTSL 5 BASIC17.24■□□□□ 0.35
Lima1Q9ERG0 Dleu2-208ENSMUST00000182768 1442 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Lima1Q9ERG0 Nsmf-203ENSMUST00000100334 2957 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Lima1Q9ERG0 Racgap1-213ENSMUST00000171702 3052 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Lima1Q9ERG0 Bsg-202ENSMUST00000105381 1240 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Lima1Q9ERG0 Gm42555-201ENSMUST00000199304 1039 ntBASIC17.24■□□□□ 0.35
Lima1Q9ERG0 Gm4881-201ENSMUST00000206705 1152 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
Lima1Q9ERG0 Uqcc2-201ENSMUST00000025045 500 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Lima1Q9ERG0 Gm37563-201ENSMUST00000192580 1513 ntBASIC17.24■□□□□ 0.35
Lima1Q9ERG0 Fbxl19-204ENSMUST00000188580 2601 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Lima1Q9ERG0 Antxr2-202ENSMUST00000199088 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Lima1Q9ERG0 Mtfr1l-202ENSMUST00000116279 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Lima1Q9ERG0 Gata6-201ENSMUST00000047762 3194 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Lima1Q9ERG0 Zufsp-202ENSMUST00000218055 2180 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Lima1Q9ERG0 Macrod2-202ENSMUST00000078027 1669 ntAPPRIS P2 TSL 5 BASIC17.23■□□□□ 0.35
Lima1Q9ERG0 Acp5-204ENSMUST00000213815 1419 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
Lima1Q9ERG0 Acp5-206ENSMUST00000217643 1447 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
Lima1Q9ERG0 Dnajc19-201ENSMUST00000011029 2499 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Lima1Q9ERG0 Tmem233-201ENSMUST00000111997 2477 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
Lima1Q9ERG0 Pcnx-204ENSMUST00000221721 8318 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
Lima1Q9ERG0 Krt81-201ENSMUST00000061185 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Lima1Q9ERG0 Ddhd1-201ENSMUST00000051310 5012 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
Lima1Q9ERG0 Tmem163-203ENSMUST00000160616 2657 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
Lima1Q9ERG0 Mycn-201ENSMUST00000043396 2674 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Lima1Q9ERG0 Ing1-202ENSMUST00000209565 1971 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Lima1Q9ERG0 Mgll-203ENSMUST00000113582 1034 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Lima1Q9ERG0 Gm44899-202ENSMUST00000209433 511 ntTSL 5 BASIC17.23■□□□□ 0.35
Lima1Q9ERG0 Ypel1-202ENSMUST00000090199 631 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Lima1Q9ERG0 Hist1h2ao-201ENSMUST00000091745 480 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
Lima1Q9ERG0 Fancg-201ENSMUST00000030165 2771 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Lima1Q9ERG0 Zbtb22-201ENSMUST00000053429 2611 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Lima1Q9ERG0 Gm44544-201ENSMUST00000207052 1844 ntBASIC17.23■□□□□ 0.35
Lima1Q9ERG0 Ppp1r3f-205ENSMUST00000150787 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Lima1Q9ERG0 Vstm2b-203ENSMUST00000205845 1455 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Lima1Q9ERG0 Dtx2-204ENSMUST00000111145 2493 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Lima1Q9ERG0 Wdr41-205ENSMUST00000160801 3062 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
Lima1Q9ERG0 Wdr41-201ENSMUST00000056512 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Lima1Q9ERG0 Ctsf-201ENSMUST00000119694 1975 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Lima1Q9ERG0 Shroom4-202ENSMUST00000103005 4839 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Lima1Q9ERG0 Gm6209-202ENSMUST00000194629 1506 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Lima1Q9ERG0 Hand1-201ENSMUST00000036917 1904 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Lima1Q9ERG0 Gm7290-201ENSMUST00000104990 617 ntBASIC17.22■□□□□ 0.35
Lima1Q9ERG0 2610528J11Rik-202ENSMUST00000106367 736 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
Lima1Q9ERG0 Etv2-201ENSMUST00000108147 1048 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Lima1Q9ERG0 Gm12918-201ENSMUST00000120234 636 ntBASIC17.22■□□□□ 0.35
Lima1Q9ERG0 Gm15710-201ENSMUST00000121821 636 ntBASIC17.22■□□□□ 0.35
Lima1Q9ERG0 Rps2-ps11-201ENSMUST00000195283 868 ntBASIC17.22■□□□□ 0.35
Lima1Q9ERG0 Gm5075-201ENSMUST00000196916 622 ntBASIC17.22■□□□□ 0.35
Lima1Q9ERG0 Gm36210-201ENSMUST00000210663 1279 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
Lima1Q9ERG0 Gm45890-201ENSMUST00000212043 1026 ntTSL 5 BASIC17.22■□□□□ 0.35
Lima1Q9ERG0 Gm45890-202ENSMUST00000212188 1052 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Lima1Q9ERG0 Rpl13-ps6-201ENSMUST00000079761 636 ntBASIC17.22■□□□□ 0.35
Lima1Q9ERG0 Rpl13-ps3-201ENSMUST00000079960 624 ntBASIC17.22■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 48.1 ms