Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Tbcel-201ENSMUST00000066148 5000 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Ddx56Q9D0R4 Gas2-201ENSMUST00000051912 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Ddx56Q9D0R4 Atp6v1g2-201ENSMUST00000068261 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Ddx56Q9D0R4 Proc-201ENSMUST00000171765 1566 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
Ddx56Q9D0R4 Pitx2-201ENSMUST00000029657 1680 ntTSL 5 BASIC18.38■□□□□ 0.53
Ddx56Q9D0R4 Mycn-202ENSMUST00000130990 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Ddx56Q9D0R4 Txnl4b-201ENSMUST00000034159 1890 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Ddx56Q9D0R4 Eomes-202ENSMUST00000111763 2869 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Ddx56Q9D0R4 Fam53a-201ENSMUST00000045329 2346 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Ddx56Q9D0R4 Vkorc1l1-203ENSMUST00000201855 4809 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Ddx56Q9D0R4 Acot8-202ENSMUST00000103094 1152 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Ddx56Q9D0R4 Speg-203ENSMUST00000113588 1078 ntTSL 5 BASIC18.37■□□□□ 0.53
Ddx56Q9D0R4 Acot8-201ENSMUST00000017451 1055 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Ddx56Q9D0R4 Klf13-202ENSMUST00000183817 599 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Ddx56Q9D0R4 4933406B15Rik-201ENSMUST00000220065 1182 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Ddx56Q9D0R4 Cdk2ap2-201ENSMUST00000025779 1080 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Ddx56Q9D0R4 Tnnt2-201ENSMUST00000027671 1064 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
Ddx56Q9D0R4 Cadm1-201ENSMUST00000034581 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Ddx56Q9D0R4 Dhx36-201ENSMUST00000029336 5620 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Ddx56Q9D0R4 Ssu72-201ENSMUST00000030905 1472 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Ddx56Q9D0R4 Ppp1cb-201ENSMUST00000015100 5962 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Ddx56Q9D0R4 4430402I18Rik-205ENSMUST00000162110 1559 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
Ddx56Q9D0R4 Slc25a39-202ENSMUST00000107098 1606 ntAPPRIS ALT1 TSL 5 BASIC18.37■□□□□ 0.53
Ddx56Q9D0R4 Usp21-202ENSMUST00000111305 2278 ntAPPRIS P2 TSL 5 BASIC18.37■□□□□ 0.53
Ddx56Q9D0R4 Trap1-201ENSMUST00000006137 2320 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Ddx56Q9D0R4 Fam104a-201ENSMUST00000120194 2619 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Ddx56Q9D0R4 Vps53-202ENSMUST00000094015 2645 ntTSL 5 BASIC18.36■□□□□ 0.53
Ddx56Q9D0R4 Xxylt1-201ENSMUST00000055389 2987 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Ddx56Q9D0R4 4930461C15Rik-201ENSMUST00000133622 1302 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Ddx56Q9D0R4 D1Ertd622e-204ENSMUST00000153115 3495 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Ddx56Q9D0R4 Ccdc58-202ENSMUST00000163352 970 ntTSL 3 BASIC18.36■□□□□ 0.53
Ddx56Q9D0R4 Ccdc58-203ENSMUST00000164916 1096 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Ddx56Q9D0R4 Gm20760-201ENSMUST00000179197 648 ntBASIC18.36■□□□□ 0.53
Ddx56Q9D0R4 D130020L05Rik-202ENSMUST00000220889 769 ntTSL 3 BASIC18.36■□□□□ 0.53
Ddx56Q9D0R4 Snx21-201ENSMUST00000056181 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Ddx56Q9D0R4 Garem1-201ENSMUST00000049260 4923 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ddx56Q9D0R4 Pomp-201ENSMUST00000031654 1579 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ddx56Q9D0R4 Cetn4-205ENSMUST00000140956 2981 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Ddx56Q9D0R4 Tlcd1-204ENSMUST00000127587 1412 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ddx56Q9D0R4 Diaph1-205ENSMUST00000115634 5666 ntAPPRIS P3 TSL 5 BASIC18.35■□□□□ 0.53
Ddx56Q9D0R4 Rab1a-201ENSMUST00000020358 2827 ntAPPRIS ALT1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ddx56Q9D0R4 Rpl36al-202ENSMUST00000110619 1276 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
Ddx56Q9D0R4 Gm12382-201ENSMUST00000122005 922 ntBASIC18.35■□□□□ 0.53
Ddx56Q9D0R4 Zfp560-202ENSMUST00000143992 608 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Ddx56Q9D0R4 Tnfaip8-208ENSMUST00000148989 1002 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
Ddx56Q9D0R4 Cklf-203ENSMUST00000211809 525 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ddx56Q9D0R4 Flywch2-201ENSMUST00000024704 694 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ddx56Q9D0R4 Stmn1-201ENSMUST00000030636 1060 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ddx56Q9D0R4 Kat2b-ps-201ENSMUST00000128468 2490 ntBASIC18.35■□□□□ 0.53
Ddx56Q9D0R4 Tmem198-201ENSMUST00000050899 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Ddx56Q9D0R4 Nrl-201ENSMUST00000062232 2504 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ddx56Q9D0R4 Tm2d3-202ENSMUST00000065574 1478 ntAPPRIS P4 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ddx56Q9D0R4 Gne-202ENSMUST00000102936 2920 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ddx56Q9D0R4 Aurkb-201ENSMUST00000021277 1950 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ddx56Q9D0R4 Bex3-202ENSMUST00000113112 826 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ddx56Q9D0R4 Sp3os-201ENSMUST00000123087 583 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Ddx56Q9D0R4 Cbx2-201ENSMUST00000026662 3807 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ddx56Q9D0R4 B3gnt9-202ENSMUST00000136822 2516 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
Ddx56Q9D0R4 Rbpms-213ENSMUST00000191473 2547 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Ddx56Q9D0R4 Itgb1bp1-201ENSMUST00000076260 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ddx56Q9D0R4 Lrrc58-201ENSMUST00000078717 8604 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ddx56Q9D0R4 Ttc39a-201ENSMUST00000064129 2356 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ddx56Q9D0R4 Eif1a-202ENSMUST00000168382 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ddx56Q9D0R4 Dus3l-201ENSMUST00000007747 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ddx56Q9D0R4 Tle4-201ENSMUST00000052011 4555 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ddx56Q9D0R4 Zfp282-201ENSMUST00000061890 5573 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ddx56Q9D0R4 Bub3-201ENSMUST00000084502 2218 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Ddx56Q9D0R4 AC125311.2-201ENSMUST00000227477 1940 ntBASIC18.33■□□□□ 0.53
Ddx56Q9D0R4 Hmga1-204ENSMUST00000118570 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Ddx56Q9D0R4 Nfib-206ENSMUST00000107248 3294 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Ddx56Q9D0R4 Sft2d2-201ENSMUST00000043338 5535 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Ddx56Q9D0R4 Arrb1-210ENSMUST00000179755 7135 ntTSL 5 BASIC18.33■□□□□ 0.53
Ddx56Q9D0R4 Arrb1-202ENSMUST00000098266 7132 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Ddx56Q9D0R4 Lcorl-202ENSMUST00000045586 5708 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Ddx56Q9D0R4 Plxdc1-202ENSMUST00000107564 619 ntTSL 2 BASIC18.33■□□□□ 0.52
Ddx56Q9D0R4 Naa10-205ENSMUST00000114390 797 ntTSL 5 BASIC18.33■□□□□ 0.52
Ddx56Q9D0R4 Gm15378-201ENSMUST00000121894 207 ntBASIC18.33■□□□□ 0.52
Ddx56Q9D0R4 Serf1-204ENSMUST00000151821 570 ntTSL 2 BASIC18.33■□□□□ 0.52
Ddx56Q9D0R4 Gm43183-201ENSMUST00000200632 547 ntBASIC18.33■□□□□ 0.52
Ddx56Q9D0R4 Cmip-202ENSMUST00000166750 2408 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
Ddx56Q9D0R4 Pdap1-201ENSMUST00000031627 2353 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Ddx56Q9D0R4 9930012K11Rik-205ENSMUST00000153871 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Ddx56Q9D0R4 2010016I18Rik-204ENSMUST00000190356 1562 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Ddx56Q9D0R4 2810408A11Rik-201ENSMUST00000018714 1485 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Ddx56Q9D0R4 Cntln-201ENSMUST00000047023 5528 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
Ddx56Q9D0R4 Gclm-201ENSMUST00000029769 5589 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ddx56Q9D0R4 Eif2b4-201ENSMUST00000077693 2025 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ddx56Q9D0R4 Coil-201ENSMUST00000036649 2607 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ddx56Q9D0R4 Gm17041-201ENSMUST00000163196 479 ntTSL 3 BASIC18.32■□□□□ 0.52
Ddx56Q9D0R4 Stk32c-202ENSMUST00000165870 1883 ntTSL 5 BASIC18.32■□□□□ 0.52
Ddx56Q9D0R4 St7l-202ENSMUST00000106769 2428 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Ddx56Q9D0R4 Lins1-203ENSMUST00000121777 2729 ntAPPRIS P3 TSL 2 BASIC18.32■□□□□ 0.52
Ddx56Q9D0R4 Vangl2-203ENSMUST00000111264 2349 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Ddx56Q9D0R4 Acadvl-201ENSMUST00000018718 2020 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
Ddx56Q9D0R4 Otud5-201ENSMUST00000033494 4259 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ddx56Q9D0R4 Ddx19a-201ENSMUST00000040416 2547 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Ddx56Q9D0R4 Matn4-202ENSMUST00000103104 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Ddx56Q9D0R4 Nxn-201ENSMUST00000021204 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Ddx56Q9D0R4 2310022A10Rik-201ENSMUST00000067386 2701 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Ddx56Q9D0R4 Rtkn-201ENSMUST00000065512 2191 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 25.2 ms