Protein–RNA interactions for Protein: Q8VI40

Trim60, Tripartite motif-containing protein 60, mousemouse

Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim60Q8VI40 Tm2d3-202ENSMUST00000065574 1478 ntAPPRIS P4 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trim60Q8VI40 Henmt1-202ENSMUST00000098680 1466 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trim60Q8VI40 Macrod2-202ENSMUST00000078027 1669 ntAPPRIS P2 TSL 5 BASIC18.11■□□□□ 0.49
Trim60Q8VI40 Itgb1bp1-201ENSMUST00000076260 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trim60Q8VI40 Krt86-201ENSMUST00000088049 1960 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trim60Q8VI40 Agfg1-205ENSMUST00000187899 2078 ntTSL 5 BASIC18.11■□□□□ 0.49
Trim60Q8VI40 Fam199x-201ENSMUST00000047852 8299 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trim60Q8VI40 Itpripl2-201ENSMUST00000178344 6865 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
Trim60Q8VI40 Appl2-201ENSMUST00000020500 3020 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trim60Q8VI40 Msx2-201ENSMUST00000021922 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trim60Q8VI40 Naa60-212ENSMUST00000186375 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trim60Q8VI40 She-201ENSMUST00000050401 5733 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trim60Q8VI40 Pomp-201ENSMUST00000031654 1579 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trim60Q8VI40 Tsc22d1-214ENSMUST00000177207 1476 ntTSL 3 BASIC18.1■□□□□ 0.49
Trim60Q8VI40 Arhgap42-203ENSMUST00000183182 1458 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Trim60Q8VI40 Zfp467-201ENSMUST00000101443 599 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Trim60Q8VI40 Pigp-202ENSMUST00000113906 745 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trim60Q8VI40 Nfe2l3-203ENSMUST00000160133 1125 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Trim60Q8VI40 Map4k5-201ENSMUST00000049239 4452 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trim60Q8VI40 Rnf146-202ENSMUST00000160144 4323 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trim60Q8VI40 Ache-201ENSMUST00000024099 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trim60Q8VI40 Slc25a26-201ENSMUST00000061118 1922 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Trim60Q8VI40 Myo5b-201ENSMUST00000074157 6745 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trim60Q8VI40 C430049E01Rik-201ENSMUST00000207913 1820 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trim60Q8VI40 Cdc123-201ENSMUST00000043864 1827 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trim60Q8VI40 Map3k10-201ENSMUST00000036453 3682 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trim60Q8VI40 C1qtnf12-201ENSMUST00000024338 1315 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trim60Q8VI40 Fdx1l-201ENSMUST00000010348 812 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trim60Q8VI40 Moap1-202ENSMUST00000178384 1284 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
Trim60Q8VI40 Tcf7l2-203ENSMUST00000111646 2839 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Trim60Q8VI40 Fam3c-203ENSMUST00000163963 1617 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Trim60Q8VI40 Unc13b-203ENSMUST00000107953 5034 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.49
Trim60Q8VI40 Ddhd1-201ENSMUST00000051310 5012 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.49
Trim60Q8VI40 9930012K11Rik-205ENSMUST00000153871 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
Trim60Q8VI40 Fxr1-201ENSMUST00000001620 2459 ntTSL 5 BASIC18.08■□□□□ 0.49
Trim60Q8VI40 Nsmf-202ENSMUST00000074422 2824 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Trim60Q8VI40 Jtb-202ENSMUST00000119304 878 ntTSL 3 BASIC18.08■□□□□ 0.48
Trim60Q8VI40 Josd2-205ENSMUST00000120852 727 ntAPPRIS P1 TSL 3 BASIC18.08■□□□□ 0.48
Trim60Q8VI40 Timp4-202ENSMUST00000205131 945 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Trim60Q8VI40 Gm7075-201ENSMUST00000054760 425 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
Trim60Q8VI40 Fabp3-201ENSMUST00000070532 823 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Trim60Q8VI40 Gm26676-201ENSMUST00000181877 2226 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Trim60Q8VI40 Dlx3-201ENSMUST00000092768 2607 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Trim60Q8VI40 Vps53-202ENSMUST00000094015 2645 ntTSL 5 BASIC18.08■□□□□ 0.48
Trim60Q8VI40 Trip10-205ENSMUST00000224885 2136 ntAPPRIS ALT2 BASIC18.08■□□□□ 0.48
Trim60Q8VI40 Mief1-203ENSMUST00000228788 5352 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
Trim60Q8VI40 Gm43294-201ENSMUST00000202850 2490 ntBASIC18.08■□□□□ 0.48
Trim60Q8VI40 Tmco4-202ENSMUST00000050949 3318 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Trim60Q8VI40 Mmp28-201ENSMUST00000021020 2311 ntAPPRIS P4 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trim60Q8VI40 Rhod-202ENSMUST00000117462 1495 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Trim60Q8VI40 Gopc-202ENSMUST00000105475 4317 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
Trim60Q8VI40 Fam57b-207ENSMUST00000207020 1777 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Trim60Q8VI40 Nsfl1c-203ENSMUST00000103160 1369 ntTSL 5 BASIC18.07■□□□□ 0.48
Trim60Q8VI40 Apbb1-214ENSMUST00000189378 2878 ntAPPRIS ALT1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trim60Q8VI40 Bmi1-201ENSMUST00000028071 3594 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trim60Q8VI40 1700030C12Rik-201ENSMUST00000101462 858 ntTSL 5 BASIC18.07■□□□□ 0.48
Trim60Q8VI40 Clta-201ENSMUST00000107845 1031 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
Trim60Q8VI40 Arl2bp-202ENSMUST00000109527 1133 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Trim60Q8VI40 Speg-206ENSMUST00000122266 917 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Trim60Q8VI40 Tspan2os-201ENSMUST00000146624 590 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Trim60Q8VI40 Gm42569-201ENSMUST00000200539 472 ntBASIC18.07■□□□□ 0.48
Trim60Q8VI40 Gm6916-201ENSMUST00000205277 828 ntTSL 3 BASIC18.07■□□□□ 0.48
Trim60Q8VI40 Nat8-201ENSMUST00000032073 1123 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trim60Q8VI40 Matk-202ENSMUST00000117488 1980 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trim60Q8VI40 Gm43272-201ENSMUST00000200599 1584 ntBASIC18.07■□□□□ 0.48
Trim60Q8VI40 Zdhhc24-201ENSMUST00000006632 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trim60Q8VI40 Shroom4-202ENSMUST00000103005 4839 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trim60Q8VI40 Abtb1-201ENSMUST00000032169 1845 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trim60Q8VI40 Shank3-203ENSMUST00000109309 7365 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trim60Q8VI40 Sntg2-201ENSMUST00000021004 2411 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trim60Q8VI40 Lrrc43-202ENSMUST00000121444 2016 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trim60Q8VI40 Nadk2-202ENSMUST00000100789 3578 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
Trim60Q8VI40 Evx2-201ENSMUST00000001867 4191 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trim60Q8VI40 Prdm6-201ENSMUST00000091900 2601 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trim60Q8VI40 Cyb5a-204ENSMUST00000160180 1363 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trim60Q8VI40 Tgds-201ENSMUST00000022727 1682 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trim60Q8VI40 Mapkapk3-201ENSMUST00000035194 2816 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trim60Q8VI40 Hoxb6-201ENSMUST00000000704 1321 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trim60Q8VI40 Ak5-201ENSMUST00000045262 3323 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trim60Q8VI40 2610035D17Rik-201ENSMUST00000127263 1861 ntTSL 5 BASIC18.06■□□□□ 0.48
Trim60Q8VI40 Bambi-201ENSMUST00000025075 5040 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trim60Q8VI40 Bmp8a-201ENSMUST00000040496 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trim60Q8VI40 Gm15298-201ENSMUST00000145916 1212 ntTSL 5 BASIC18.06■□□□□ 0.48
Trim60Q8VI40 Tmbim6-202ENSMUST00000159209 944 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
Trim60Q8VI40 Gm26524-201ENSMUST00000192339 390 ntBASIC18.06■□□□□ 0.48
Trim60Q8VI40 Nme4-201ENSMUST00000025007 912 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trim60Q8VI40 Cdkn2a-201ENSMUST00000060501 852 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Trim60Q8VI40 Zfp580-201ENSMUST00000069324 1096 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trim60Q8VI40 9330160F10Rik-201ENSMUST00000101007 2766 ntBASIC18.06■□□□□ 0.48
Trim60Q8VI40 Cacna1h-205ENSMUST00000159610 8230 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trim60Q8VI40 Picalm-206ENSMUST00000207484 8209 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trim60Q8VI40 Cacna1h-201ENSMUST00000078496 8220 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trim60Q8VI40 Gm45472-201ENSMUST00000211295 1426 ntTSL 5 BASIC18.06■□□□□ 0.48
Trim60Q8VI40 Kank3-201ENSMUST00000048560 2641 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Trim60Q8VI40 Lmtk2-201ENSMUST00000041804 8114 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Trim60Q8VI40 Eml2-203ENSMUST00000120595 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Trim60Q8VI40 Grk6-201ENSMUST00000001115 2994 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Trim60Q8VI40 Vsig10l-204ENSMUST00000203769 2473 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Trim60Q8VI40 Dhx32-203ENSMUST00000106139 2233 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Trim60Q8VI40 Rmdn3-201ENSMUST00000094695 2249 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Retrieved 100 of 76,532 protein–RNA pairs in 44.3 ms