Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Gatad2a-202ENSMUST00000116463 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC24.03■■□□□ 1.44
Usp40Q8BWR4 Hhat-203ENSMUST00000128619 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC24.03■■□□□ 1.44
Usp40Q8BWR4 Nmnat3-202ENSMUST00000112937 1898 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
Usp40Q8BWR4 4930526A20Rik-201ENSMUST00000134228 941 ntBASIC24.03■■□□□ 1.44
Usp40Q8BWR4 Gm27389-201ENSMUST00000183622 195 ntBASIC24.03■■□□□ 1.44
Usp40Q8BWR4 Pcyox1-206ENSMUST00000204116 546 ntTSL 5 BASIC24.03■■□□□ 1.44
Usp40Q8BWR4 Kiss1r-202ENSMUST00000219745 979 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
Usp40Q8BWR4 Mrpl43-201ENSMUST00000097715 1213 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
Usp40Q8BWR4 Zscan25-201ENSMUST00000094116 1796 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
Usp40Q8BWR4 Klhl33-201ENSMUST00000164415 1602 ntTSL 5 BASIC24.02■■□□□ 1.44
Usp40Q8BWR4 Tmem51os1-202ENSMUST00000141769 2131 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
Usp40Q8BWR4 Trim25-202ENSMUST00000100627 1433 ntTSL 5 BASIC24.02■■□□□ 1.44
Usp40Q8BWR4 Tgds-201ENSMUST00000022727 1682 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
Usp40Q8BWR4 Fzd2-201ENSMUST00000057893 3663 ntAPPRIS P1 BASIC24.02■■□□□ 1.44
Usp40Q8BWR4 Acbd4-203ENSMUST00000107040 1959 ntTSL 2 BASIC24.02■■□□□ 1.44
Usp40Q8BWR4 Hbs1l-202ENSMUST00000061324 1998 ntTSL 3 BASIC24.02■■□□□ 1.44
Usp40Q8BWR4 Matk-201ENSMUST00000105328 2228 ntAPPRIS ALT2 TSL 1 (best) BASIC24.02■■□□□ 1.44
Usp40Q8BWR4 Gm25016-201ENSMUST00000158399 131 ntBASIC24.02■■□□□ 1.44
Usp40Q8BWR4 Nthl1-201ENSMUST00000047611 1080 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
Usp40Q8BWR4 Znrf1-205ENSMUST00000172856 4600 ntAPPRIS P1 TSL 5 BASIC24.02■■□□□ 1.44
Usp40Q8BWR4 Gfi1-201ENSMUST00000031205 2860 ntAPPRIS P3 TSL 1 (best) BASIC24.02■■□□□ 1.44
Usp40Q8BWR4 Gm15582-201ENSMUST00000132849 1581 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
Usp40Q8BWR4 Marcks-201ENSMUST00000092584 4048 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
Usp40Q8BWR4 Gm3272-201ENSMUST00000181181 1229 ntBASIC24.01■■□□□ 1.43
Usp40Q8BWR4 Gm10566-201ENSMUST00000086739 996 ntBASIC24.01■■□□□ 1.43
Usp40Q8BWR4 Elac2-203ENSMUST00000108697 2612 ntAPPRIS ALT2 TSL 5 BASIC24.01■■□□□ 1.43
Usp40Q8BWR4 Rac1-202ENSMUST00000100489 2325 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
Usp40Q8BWR4 Pced1a-202ENSMUST00000110277 1689 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
Usp40Q8BWR4 Mta3-203ENSMUST00000112350 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC24.01■■□□□ 1.43
Usp40Q8BWR4 Pomgnt2-207ENSMUST00000217610 2413 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
Usp40Q8BWR4 Gm19721-201ENSMUST00000195284 1764 ntBASIC24.01■■□□□ 1.43
Usp40Q8BWR4 Ola1-201ENSMUST00000028517 2175 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
Usp40Q8BWR4 Mfsd4a-203ENSMUST00000112370 2565 ntTSL 1 (best) BASIC24■■□□□ 1.43
Usp40Q8BWR4 Trp73-203ENSMUST00000105643 1916 ntAPPRIS ALT2 TSL 5 BASIC24■■□□□ 1.43
Usp40Q8BWR4 Negr1-203ENSMUST00000106065 1953 ntTSL 1 (best) BASIC24■■□□□ 1.43
Usp40Q8BWR4 Nectin2-202ENSMUST00000108450 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC24■■□□□ 1.43
Usp40Q8BWR4 Ispd-207ENSMUST00000223205 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC24■■□□□ 1.43
Usp40Q8BWR4 Thap4-206ENSMUST00000190116 5558 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
Usp40Q8BWR4 Gm38282-201ENSMUST00000192751 695 ntTSL 5 BASIC24■■□□□ 1.43
Usp40Q8BWR4 Zfp78-205ENSMUST00000208030 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC24■■□□□ 1.43
Usp40Q8BWR4 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC24■■□□□ 1.43
Usp40Q8BWR4 Hmg20b-213ENSMUST00000167481 1321 ntAPPRIS P1 TSL 5 BASIC24■■□□□ 1.43
Usp40Q8BWR4 Tada2b-201ENSMUST00000031097 3791 ntAPPRIS P1 TSL 2 BASIC24■■□□□ 1.43
Usp40Q8BWR4 Lhx6-208ENSMUST00000148852 1481 ntTSL 5 BASIC24■■□□□ 1.43
Usp40Q8BWR4 1700003E16Rik-202ENSMUST00000203203 2070 ntTSL 2 BASIC23.99■■□□□ 1.43
Usp40Q8BWR4 Tmem245-202ENSMUST00000107609 2643 ntAPPRIS P2 TSL 5 BASIC23.99■■□□□ 1.43
Usp40Q8BWR4 Rab3d-202ENSMUST00000119055 694 ntTSL 3 BASIC23.99■■□□□ 1.43
Usp40Q8BWR4 Hnrnph3-203ENSMUST00000119814 682 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
Usp40Q8BWR4 Ppdpf-201ENSMUST00000016488 1160 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
Usp40Q8BWR4 Ak6-201ENSMUST00000022135 1298 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
Usp40Q8BWR4 Pym1-201ENSMUST00000065210 1156 ntAPPRIS ALT2 TSL 1 (best) BASIC23.99■■□□□ 1.43
Usp40Q8BWR4 Olfr315-201ENSMUST00000081533 998 ntAPPRIS P1 BASIC23.99■■□□□ 1.43
Usp40Q8BWR4 1300014J16Rik-201ENSMUST00000219015 1337 ntBASIC23.99■■□□□ 1.43
Usp40Q8BWR4 Gm7008-201ENSMUST00000038121 1366 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
Usp40Q8BWR4 Ube2d1-201ENSMUST00000020085 1431 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
Usp40Q8BWR4 Mgme1-203ENSMUST00000110028 2308 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
Usp40Q8BWR4 Txnl4b-201ENSMUST00000034159 1890 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
Usp40Q8BWR4 Ubald1-201ENSMUST00000037843 1851 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
Usp40Q8BWR4 Magi3-201ENSMUST00000064371 6640 ntAPPRIS P3 TSL 1 (best) BASIC23.98■■□□□ 1.43
Usp40Q8BWR4 Tbc1d25-204ENSMUST00000172020 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC23.98■■□□□ 1.43
Usp40Q8BWR4 Crct1-202ENSMUST00000107301 460 ntAPPRIS P1 TSL 2 BASIC23.98■■□□□ 1.43
Usp40Q8BWR4 Ndufb11-201ENSMUST00000116621 908 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
Usp40Q8BWR4 Rapgef3os1-201ENSMUST00000149373 483 ntTSL 3 BASIC23.98■■□□□ 1.43
Usp40Q8BWR4 Gm5587-201ENSMUST00000206270 674 ntBASIC23.98■■□□□ 1.43
Usp40Q8BWR4 Racgap1-213ENSMUST00000171702 3052 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
Usp40Q8BWR4 Krt15-201ENSMUST00000107411 1700 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
Usp40Q8BWR4 Mprip-204ENSMUST00000116371 8766 ntAPPRIS ALT2 TSL 1 (best) BASIC23.98■■□□□ 1.43
Usp40Q8BWR4 Prpsap1-201ENSMUST00000106391 1841 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
Usp40Q8BWR4 Epn1-207ENSMUST00000208634 2127 ntAPPRIS ALT2 TSL 5 BASIC23.98■■□□□ 1.43
Usp40Q8BWR4 Pdzd3-201ENSMUST00000034618 2193 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
Usp40Q8BWR4 Cyth2-202ENSMUST00000107729 2519 ntAPPRIS P2 TSL 1 (best) BASIC23.98■■□□□ 1.43
Usp40Q8BWR4 Ssc4d-203ENSMUST00000111152 2745 ntAPPRIS P1 TSL 5 BASIC23.97■■□□□ 1.43
Usp40Q8BWR4 Npb-202ENSMUST00000106194 530 ntAPPRIS ALT2 TSL 2 BASIC23.97■■□□□ 1.43
Usp40Q8BWR4 Npb-203ENSMUST00000106195 542 ntAPPRIS P3 TSL 1 (best) BASIC23.97■■□□□ 1.43
Usp40Q8BWR4 Nit1-202ENSMUST00000111295 1335 ntAPPRIS P3 TSL 1 (best) BASIC23.97■■□□□ 1.43
Usp40Q8BWR4 Atp5c1-202ENSMUST00000114896 1735 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
Usp40Q8BWR4 Gprc5c-203ENSMUST00000122967 1709 ntTSL 5 BASIC23.97■■□□□ 1.43
Usp40Q8BWR4 Gm20460-201ENSMUST00000168709 1572 ntTSL 5 BASIC23.97■■□□□ 1.43
Usp40Q8BWR4 Gm44618-201ENSMUST00000208431 2262 ntTSL 3 BASIC23.97■■□□□ 1.43
Usp40Q8BWR4 Meox1-201ENSMUST00000057054 2228 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
Usp40Q8BWR4 Hmgb3-202ENSMUST00000072699 1571 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
Usp40Q8BWR4 Elac2-201ENSMUST00000071891 2771 ntAPPRIS P2 TSL 1 (best) BASIC23.97■■□□□ 1.43
Usp40Q8BWR4 F8a-201ENSMUST00000105111 2505 ntAPPRIS P1 BASIC23.97■■□□□ 1.43
Usp40Q8BWR4 Gm29430-202ENSMUST00000191453 2015 ntTSL 5 BASIC23.96■■□□□ 1.43
Usp40Q8BWR4 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
Usp40Q8BWR4 Mrpl37-201ENSMUST00000030365 1498 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
Usp40Q8BWR4 Smarcd2-201ENSMUST00000021052 2747 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
Usp40Q8BWR4 Mrps18c-203ENSMUST00000112901 820 ntAPPRIS ALT2 TSL 1 (best) BASIC23.96■■□□□ 1.43
Usp40Q8BWR4 Gm4316-202ENSMUST00000212490 1115 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
Usp40Q8BWR4 Spata33-206ENSMUST00000212637 569 ntAPPRIS ALT2 TSL 2 BASIC23.96■■□□□ 1.43
Usp40Q8BWR4 Gm19554-201ENSMUST00000220934 2076 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
Usp40Q8BWR4 Six3os1-206ENSMUST00000175921 2737 ntTSL 1 (best) BASIC23.96■■□□□ 1.43
Usp40Q8BWR4 Ndufv3-201ENSMUST00000046288 1537 ntAPPRIS P4 TSL 1 (best) BASIC23.95■■□□□ 1.43
Usp40Q8BWR4 Tal1-204ENSMUST00000162489 2894 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
Usp40Q8BWR4 Nfil3-201ENSMUST00000071065 2026 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
Usp40Q8BWR4 Rnf208-202ENSMUST00000114355 1333 ntAPPRIS P1 BASIC23.95■■□□□ 1.42
Usp40Q8BWR4 Aurkb-201ENSMUST00000021277 1950 ntAPPRIS P1 TSL 1 (best) BASIC23.95■■□□□ 1.42
Usp40Q8BWR4 Calu-207ENSMUST00000173216 673 ntTSL 5 BASIC23.95■■□□□ 1.42
Usp40Q8BWR4 Ank2-226ENSMUST00000189368 339 ntBASIC23.95■■□□□ 1.42
Usp40Q8BWR4 Gm43791-201ENSMUST00000202914 468 ntTSL 5 BASIC23.95■■□□□ 1.42
Retrieved 100 of 76,532 protein–RNA pairs in 19 ms