Protein–RNA interactions for Protein: Q8BTF7

Lig4, DNA ligase 4, mousemouse

Predictions only

Length 911 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig4Q8BTF7 Shc3-201ENSMUST00000021898 1537 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Lig4Q8BTF7 Gm2788-202ENSMUST00000147173 1390 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Lig4Q8BTF7 Mirt1-201ENSMUST00000180489 5292 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Lig4Q8BTF7 Ispd-207ENSMUST00000223205 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Lig4Q8BTF7 Timm17b-201ENSMUST00000033498 2381 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Lig4Q8BTF7 Zxdc-203ENSMUST00000113539 4864 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
Lig4Q8BTF7 Mrpl9-201ENSMUST00000029786 1612 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
Lig4Q8BTF7 Crebbp-201ENSMUST00000023165 10820 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
Lig4Q8BTF7 Tmem131-208ENSMUST00000194563 6698 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
Lig4Q8BTF7 Nrn1-202ENSMUST00000122286 691 ntTSL 3 BASIC18.52■□□□□ 0.56
Lig4Q8BTF7 2210408F21Rik-213ENSMUST00000153057 652 ntTSL 3 BASIC18.52■□□□□ 0.56
Lig4Q8BTF7 Mir9-3hg-206ENSMUST00000182937 636 ntTSL 3 BASIC18.52■□□□□ 0.56
Lig4Q8BTF7 Sept4-205ENSMUST00000107962 1678 ntAPPRIS ALT1 TSL 5 BASIC18.52■□□□□ 0.56
Lig4Q8BTF7 Hpn-209ENSMUST00000168884 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Lig4Q8BTF7 Bend4-204ENSMUST00000201972 8268 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.55
Lig4Q8BTF7 Mmp11-201ENSMUST00000000924 2288 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Lig4Q8BTF7 Rtkn-203ENSMUST00000121093 2597 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
Lig4Q8BTF7 Gm26885-201ENSMUST00000181920 1688 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Lig4Q8BTF7 Pgs1-203ENSMUST00000132676 2863 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Lig4Q8BTF7 Klf13-202ENSMUST00000183817 599 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Lig4Q8BTF7 Gm38027-201ENSMUST00000192315 235 ntBASIC18.51■□□□□ 0.55
Lig4Q8BTF7 Sox30-201ENSMUST00000049038 2997 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Lig4Q8BTF7 Cebpg-201ENSMUST00000070191 914 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
Lig4Q8BTF7 Lpcat2-205ENSMUST00000210099 2179 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Lig4Q8BTF7 Pkp4-202ENSMUST00000102754 4614 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
Lig4Q8BTF7 Gpn3-201ENSMUST00000031420 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Lig4Q8BTF7 Irx5-201ENSMUST00000034184 2450 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Lig4Q8BTF7 Gm4675-202ENSMUST00000164755 2322 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Lig4Q8BTF7 4930519A11Rik-201ENSMUST00000181381 1523 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Lig4Q8BTF7 Naa60-212ENSMUST00000186375 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Lig4Q8BTF7 Gm20878-202ENSMUST00000108028 339 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
Lig4Q8BTF7 Gm24841-201ENSMUST00000158676 357 ntBASIC18.5■□□□□ 0.55
Lig4Q8BTF7 Ndufa12-201ENSMUST00000020209 1110 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Lig4Q8BTF7 Casp3-203ENSMUST00000210534 583 ntTSL 5 BASIC18.5■□□□□ 0.55
Lig4Q8BTF7 Lysmd2-201ENSMUST00000034702 1189 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Lig4Q8BTF7 Snapc3-202ENSMUST00000071544 942 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Lig4Q8BTF7 Map3k5-201ENSMUST00000095806 5450 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Lig4Q8BTF7 Pip5k1c-202ENSMUST00000105327 2551 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
Lig4Q8BTF7 Zfp697-202ENSMUST00000178372 4703 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
Lig4Q8BTF7 Fkbp5-201ENSMUST00000079413 3542 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Lig4Q8BTF7 Cacna1b-202ENSMUST00000070864 9655 ntAPPRIS P3 TSL 5 BASIC18.5■□□□□ 0.55
Lig4Q8BTF7 Tra2a-204ENSMUST00000204189 1777 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Lig4Q8BTF7 Gm27029-202ENSMUST00000107259 1855 ntAPPRIS P5 TSL 5 BASIC18.5■□□□□ 0.55
Lig4Q8BTF7 Nmnat3-202ENSMUST00000112937 1898 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Lig4Q8BTF7 Fam222a-201ENSMUST00000043650 2930 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Lig4Q8BTF7 Dlg1-205ENSMUST00000115201 3248 ntTSL 5 BASIC18.49■□□□□ 0.55
Lig4Q8BTF7 Hs6st1-201ENSMUST00000088174 3719 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Lig4Q8BTF7 Necab3-202ENSMUST00000109716 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Lig4Q8BTF7 Pfn2-201ENSMUST00000066882 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Lig4Q8BTF7 Fam171b-201ENSMUST00000051454 5614 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Lig4Q8BTF7 Ctnnal1-202ENSMUST00000107612 850 ntTSL 3 BASIC18.49■□□□□ 0.55
Lig4Q8BTF7 Echdc2-204ENSMUST00000116309 1238 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Lig4Q8BTF7 Khdc3-204ENSMUST00000173734 1228 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Lig4Q8BTF7 Ssr2-207ENSMUST00000195014 1059 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Lig4Q8BTF7 Eif1a-202ENSMUST00000168382 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Lig4Q8BTF7 Mex3b-201ENSMUST00000082237 3355 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
Lig4Q8BTF7 Smarcd2-201ENSMUST00000021052 2747 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Lig4Q8BTF7 Gm5953-201ENSMUST00000220644 2616 ntBASIC18.49■□□□□ 0.55
Lig4Q8BTF7 Yipf3-201ENSMUST00000095263 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Lig4Q8BTF7 Ism1-202ENSMUST00000184404 2964 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Lig4Q8BTF7 Trim47-202ENSMUST00000106441 2192 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Lig4Q8BTF7 Aldh5a1-201ENSMUST00000037615 5647 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Lig4Q8BTF7 Gm26879-201ENSMUST00000181127 1176 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Lig4Q8BTF7 AW011738-201ENSMUST00000105140 1848 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
Lig4Q8BTF7 Isyna1-201ENSMUST00000019283 1836 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Lig4Q8BTF7 Fam46a-202ENSMUST00000187711 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Lig4Q8BTF7 Nectin2-202ENSMUST00000108450 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Lig4Q8BTF7 Gm5828-201ENSMUST00000071842 1860 ntBASIC18.48■□□□□ 0.55
Lig4Q8BTF7 Ankle1-201ENSMUST00000119976 2136 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
Lig4Q8BTF7 Arhgef17-204ENSMUST00000209041 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Lig4Q8BTF7 Hilpda-202ENSMUST00000115289 658 ntAPPRIS P1 TSL 3 BASIC18.47■□□□□ 0.55
Lig4Q8BTF7 Tsfm-202ENSMUST00000120547 1271 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Lig4Q8BTF7 Prr23a1-201ENSMUST00000170349 883 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
Lig4Q8BTF7 Gm26643-201ENSMUST00000180854 1274 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Lig4Q8BTF7 Rps2-ps2-201ENSMUST00000194305 881 ntBASIC18.47■□□□□ 0.55
Lig4Q8BTF7 Gm43799-201ENSMUST00000201845 579 ntBASIC18.47■□□□□ 0.55
Lig4Q8BTF7 AC153881.2-201ENSMUST00000214877 204 ntBASIC18.47■□□□□ 0.55
Lig4Q8BTF7 Gm35240-201ENSMUST00000218335 661 ntTSL 2 BASIC18.47■□□□□ 0.55
Lig4Q8BTF7 Arl2-201ENSMUST00000025893 1144 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Lig4Q8BTF7 Cds2-202ENSMUST00000103181 8396 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Lig4Q8BTF7 Icam5-201ENSMUST00000019616 2947 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Lig4Q8BTF7 Farp1-201ENSMUST00000026635 4885 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
Lig4Q8BTF7 Agfg1-205ENSMUST00000187899 2078 ntTSL 5 BASIC18.46■□□□□ 0.55
Lig4Q8BTF7 Socs6-203ENSMUST00000125362 2814 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Lig4Q8BTF7 Grk6-206ENSMUST00000224995 2971 ntBASIC18.46■□□□□ 0.55
Lig4Q8BTF7 Crocc-203ENSMUST00000102491 6582 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Lig4Q8BTF7 Cyp4f13-204ENSMUST00000139353 1389 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Lig4Q8BTF7 Tmem51os1-202ENSMUST00000141769 2131 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Lig4Q8BTF7 4930452B06Rik-201ENSMUST00000102996 2681 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Lig4Q8BTF7 Gm16105-201ENSMUST00000156926 697 ntTSL 3 BASIC18.46■□□□□ 0.55
Lig4Q8BTF7 Bax-201ENSMUST00000033093 867 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Lig4Q8BTF7 Psmd4-201ENSMUST00000071664 1276 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
Lig4Q8BTF7 U2af2-201ENSMUST00000005041 2183 ntAPPRIS ALT1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Lig4Q8BTF7 Aig1-201ENSMUST00000019942 1439 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Lig4Q8BTF7 Nfs1-201ENSMUST00000029147 2051 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Lig4Q8BTF7 P2ry2-204ENSMUST00000207916 2372 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Lig4Q8BTF7 Tbx3os2-201ENSMUST00000135385 1345 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Lig4Q8BTF7 Lhfp-201ENSMUST00000059562 2108 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Lig4Q8BTF7 1600012H06Rik-202ENSMUST00000164837 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Lig4Q8BTF7 Mapk1-202ENSMUST00000069107 5099 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.54
Retrieved 100 of 76,532 protein–RNA pairs in 39.3 ms