Protein–RNA interactions for Protein: Q6PGB8

Smarca1, Probable global transcription activator SNF2L1, mousemouse

Predictions only

Length 1,046 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarca1Q6PGB8 Pafah1b1-201ENSMUST00000021091 5803 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Smarca1Q6PGB8 Wnk2-211ENSMUST00000162581 6628 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
Smarca1Q6PGB8 Ola1-201ENSMUST00000028517 2175 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Smarca1Q6PGB8 Bean1-203ENSMUST00000167633 3275 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
Smarca1Q6PGB8 Ankrd9-202ENSMUST00000128353 2577 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Smarca1Q6PGB8 Serinc2-201ENSMUST00000105996 1878 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
Smarca1Q6PGB8 Krt12-201ENSMUST00000017741 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Smarca1Q6PGB8 Myb-201ENSMUST00000020158 3074 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
Smarca1Q6PGB8 Smad1-202ENSMUST00000066091 3099 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Smarca1Q6PGB8 Adsl-204ENSMUST00000164806 1595 ntTSL 5 BASIC19.41■□□□□ 0.7
Smarca1Q6PGB8 Samd8-201ENSMUST00000022292 1574 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Smarca1Q6PGB8 Zfyve9-202ENSMUST00000106657 6459 ntAPPRIS P2 TSL 5 BASIC19.41■□□□□ 0.7
Smarca1Q6PGB8 Slc25a39-202ENSMUST00000107098 1606 ntAPPRIS ALT1 TSL 5 BASIC19.41■□□□□ 0.7
Smarca1Q6PGB8 Gm26885-201ENSMUST00000181920 1688 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Smarca1Q6PGB8 Gm45709-201ENSMUST00000213052 1075 ntTSL 5 BASIC19.41■□□□□ 0.7
Smarca1Q6PGB8 AC166341.7-201ENSMUST00000221698 126 ntBASIC19.41■□□□□ 0.7
Smarca1Q6PGB8 Vgf-201ENSMUST00000041543 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Smarca1Q6PGB8 Inppl1-202ENSMUST00000165052 4730 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Smarca1Q6PGB8 Wisp2-201ENSMUST00000029188 1719 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Smarca1Q6PGB8 Cep170b-202ENSMUST00000101018 6641 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Smarca1Q6PGB8 Itsn1-206ENSMUST00000113999 5393 ntTSL 5 BASIC19.41■□□□□ 0.7
Smarca1Q6PGB8 Ino80e-202ENSMUST00000106342 1840 ntTSL 3 BASIC19.41■□□□□ 0.7
Smarca1Q6PGB8 Gm27029-202ENSMUST00000107259 1855 ntAPPRIS P5 TSL 5 BASIC19.41■□□□□ 0.7
Smarca1Q6PGB8 Ttc13-201ENSMUST00000041614 3038 ntTSL 2 BASIC19.41■□□□□ 0.7
Smarca1Q6PGB8 Shc3-201ENSMUST00000021898 1537 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Smarca1Q6PGB8 Mtcp1-201ENSMUST00000033542 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Smarca1Q6PGB8 Apba3-201ENSMUST00000057798 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Smarca1Q6PGB8 Rbmxl1-201ENSMUST00000049245 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Smarca1Q6PGB8 Meis2-202ENSMUST00000074285 2844 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Smarca1Q6PGB8 Dtx4-201ENSMUST00000045521 5765 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Smarca1Q6PGB8 Ncam2-202ENSMUST00000067602 3563 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Smarca1Q6PGB8 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC19.4■□□□□ 0.7
Smarca1Q6PGB8 Hmga1-205ENSMUST00000118599 529 ntAPPRIS P3 TSL 3 BASIC19.4■□□□□ 0.7
Smarca1Q6PGB8 Mir5122-201ENSMUST00000175004 89 ntBASIC19.4■□□□□ 0.7
Smarca1Q6PGB8 Cldn14-205ENSMUST00000177648 1266 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
Smarca1Q6PGB8 Igsf23-201ENSMUST00000043440 1908 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Smarca1Q6PGB8 Cbx6-203ENSMUST00000109627 5806 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Smarca1Q6PGB8 Synm-205ENSMUST00000208815 2697 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
Smarca1Q6PGB8 Dleu2-208ENSMUST00000182768 1442 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Smarca1Q6PGB8 Appl2-201ENSMUST00000020500 3020 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Smarca1Q6PGB8 Jph1-201ENSMUST00000038382 4809 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Smarca1Q6PGB8 Naa60-212ENSMUST00000186375 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Smarca1Q6PGB8 Tspan10-201ENSMUST00000044105 1680 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Smarca1Q6PGB8 Stox1-202ENSMUST00000133371 3510 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Smarca1Q6PGB8 Cdc123-201ENSMUST00000043864 1827 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Smarca1Q6PGB8 Pgm3-202ENSMUST00000072585 1920 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
Smarca1Q6PGB8 Ppp2r5d-201ENSMUST00000002839 2926 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Smarca1Q6PGB8 Cyr61-201ENSMUST00000029846 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Smarca1Q6PGB8 Zfp92-202ENSMUST00000086470 2050 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Smarca1Q6PGB8 Cyp4f14-202ENSMUST00000179434 2207 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
Smarca1Q6PGB8 Cyp4f14-201ENSMUST00000054174 2207 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Smarca1Q6PGB8 Bmi1-201ENSMUST00000028071 3594 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Smarca1Q6PGB8 Atad3a-201ENSMUST00000030903 2413 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Smarca1Q6PGB8 Gm12382-201ENSMUST00000122005 922 ntBASIC19.39■□□□□ 0.69
Smarca1Q6PGB8 Zmynd19-202ENSMUST00000148042 1103 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Smarca1Q6PGB8 Gm37055-201ENSMUST00000191866 133 ntBASIC19.39■□□□□ 0.69
Smarca1Q6PGB8 Gm10549-201ENSMUST00000097634 450 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
Smarca1Q6PGB8 Ergic3-202ENSMUST00000088650 1349 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Smarca1Q6PGB8 Mpst-201ENSMUST00000043865 1413 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Smarca1Q6PGB8 Sos1-201ENSMUST00000068714 8919 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
Smarca1Q6PGB8 Wt1-205ENSMUST00000143043 3090 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Smarca1Q6PGB8 4930432B10Rik-202ENSMUST00000181330 1612 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Smarca1Q6PGB8 Gm10654-201ENSMUST00000098653 1633 ntBASIC19.39■□□□□ 0.69
Smarca1Q6PGB8 Pced1a-202ENSMUST00000110277 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Smarca1Q6PGB8 Mfsd10-202ENSMUST00000114329 1906 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Smarca1Q6PGB8 Polr3d-201ENSMUST00000000793 2016 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Smarca1Q6PGB8 Epn1-201ENSMUST00000045277 2334 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Smarca1Q6PGB8 Sema3c-201ENSMUST00000030568 5491 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Smarca1Q6PGB8 Mapkapk3-201ENSMUST00000035194 2816 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Smarca1Q6PGB8 Card10-203ENSMUST00000170584 3220 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
Smarca1Q6PGB8 Rint1-204ENSMUST00000117783 560 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Smarca1Q6PGB8 B430219N15Rik-201ENSMUST00000147230 835 ntTSL 2 BASIC19.38■□□□□ 0.69
Smarca1Q6PGB8 Mrpl13-205ENSMUST00000172387 1223 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Smarca1Q6PGB8 Gnptab-201ENSMUST00000020251 5390 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Smarca1Q6PGB8 Tdh-201ENSMUST00000022522 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Smarca1Q6PGB8 Tmem80-201ENSMUST00000026578 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Smarca1Q6PGB8 Lat-201ENSMUST00000032997 1235 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Smarca1Q6PGB8 Mark3-201ENSMUST00000075281 3321 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Smarca1Q6PGB8 Vps53-202ENSMUST00000094015 2645 ntTSL 5 BASIC19.38■□□□□ 0.69
Smarca1Q6PGB8 Syngr1-202ENSMUST00000009728 819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Smarca1Q6PGB8 Mtmr1-202ENSMUST00000114601 4640 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
Smarca1Q6PGB8 Baiap2-202ENSMUST00000075180 3518 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Smarca1Q6PGB8 Klf14-201ENSMUST00000101589 3056 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
Smarca1Q6PGB8 2310022A10Rik-201ENSMUST00000067386 2701 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Smarca1Q6PGB8 Mag-201ENSMUST00000040548 2419 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Smarca1Q6PGB8 Mfsd13a-202ENSMUST00000128041 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Smarca1Q6PGB8 1700041G16Rik-202ENSMUST00000186344 1824 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Smarca1Q6PGB8 Fmnl2-203ENSMUST00000090952 5414 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
Smarca1Q6PGB8 Cyp2r1-201ENSMUST00000032908 1627 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Smarca1Q6PGB8 Pik3r2-201ENSMUST00000034296 3165 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Smarca1Q6PGB8 Znrf1-205ENSMUST00000172856 4600 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
Smarca1Q6PGB8 Hrh3-202ENSMUST00000163215 1401 ntTSL 5 BASIC19.37■□□□□ 0.69
Smarca1Q6PGB8 Espn-204ENSMUST00000080042 1402 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Smarca1Q6PGB8 Agpat3-202ENSMUST00000105387 1316 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Smarca1Q6PGB8 Commd7-202ENSMUST00000109782 1343 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Smarca1Q6PGB8 Nudt22-203ENSMUST00000180765 1073 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
Smarca1Q6PGB8 Gm37939-201ENSMUST00000192309 447 ntTSL 5 BASIC19.37■□□□□ 0.69
Smarca1Q6PGB8 Gm9803-201ENSMUST00000057649 563 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
Smarca1Q6PGB8 Sntg2-201ENSMUST00000021004 2411 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Smarca1Q6PGB8 Gm17055-201ENSMUST00000166951 2232 ntTSL 5 BASIC19.37■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 21.5 ms