Protein–RNA interactions for Protein: Q6IFX4

Krt39, Keratin, type I cytoskeletal 39, mousemouse

Predictions only

Length 482 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Krt39Q6IFX4 Fam109a-203ENSMUST00000198271 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Krt39Q6IFX4 Rpusd3-202ENSMUST00000113092 1269 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
Krt39Q6IFX4 Pigp-202ENSMUST00000113906 745 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Krt39Q6IFX4 2700033N17Rik-201ENSMUST00000140185 721 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Krt39Q6IFX4 Tecr-203ENSMUST00000165740 1120 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Krt39Q6IFX4 Cetn3-201ENSMUST00000022009 1226 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Krt39Q6IFX4 Slc7a6os-201ENSMUST00000035925 1246 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Krt39Q6IFX4 Hspe1-201ENSMUST00000075242 774 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Krt39Q6IFX4 Zufsp-202ENSMUST00000218055 2180 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Krt39Q6IFX4 Asph-204ENSMUST00000084915 2884 ntTSL 5 BASIC19.33■□□□□ 0.68
Krt39Q6IFX4 Tgds-201ENSMUST00000022727 1682 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Krt39Q6IFX4 Lzts2-203ENSMUST00000179108 2781 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Krt39Q6IFX4 Fam131b-203ENSMUST00000143278 4104 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
Krt39Q6IFX4 C430049E01Rik-201ENSMUST00000207913 1820 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Krt39Q6IFX4 Rcbtb2-226ENSMUST00000171767 2692 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Krt39Q6IFX4 Atp2c1-201ENSMUST00000038118 4876 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
Krt39Q6IFX4 Letm1-201ENSMUST00000005431 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Krt39Q6IFX4 Snx11-202ENSMUST00000107661 2197 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Krt39Q6IFX4 Tead3-205ENSMUST00000154873 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Krt39Q6IFX4 Hist1h4a-201ENSMUST00000102964 539 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
Krt39Q6IFX4 Mir5133-201ENSMUST00000174955 77 ntBASIC19.32■□□□□ 0.68
Krt39Q6IFX4 Fxyd1-215ENSMUST00000206474 572 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Krt39Q6IFX4 Wnt10b-205ENSMUST00000226846 1204 ntBASIC19.32■□□□□ 0.68
Krt39Q6IFX4 Fbxo22-201ENSMUST00000034859 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Krt39Q6IFX4 Gm7075-201ENSMUST00000054760 425 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
Krt39Q6IFX4 Olfr94-203ENSMUST00000222190 1611 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
Krt39Q6IFX4 Gtpbp3-208ENSMUST00000168847 2803 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
Krt39Q6IFX4 Wnt4-201ENSMUST00000045747 4194 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Krt39Q6IFX4 A130014A01Rik-201ENSMUST00000183021 2323 ntBASIC19.31■□□□□ 0.68
Krt39Q6IFX4 Rnf103-201ENSMUST00000064637 3264 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Krt39Q6IFX4 Rprd1b-207ENSMUST00000152452 1910 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Krt39Q6IFX4 Clk4-201ENSMUST00000093132 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Krt39Q6IFX4 Mlxip-202ENSMUST00000111596 2653 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Krt39Q6IFX4 Evx2-201ENSMUST00000001867 4191 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Krt39Q6IFX4 Ppp1cb-201ENSMUST00000015100 5962 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Krt39Q6IFX4 Gm26548-201ENSMUST00000181165 2029 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Krt39Q6IFX4 Gm10461-201ENSMUST00000202073 4786 ntBASIC19.31■□□□□ 0.68
Krt39Q6IFX4 Gm12216-203ENSMUST00000121435 655 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
Krt39Q6IFX4 Gm29257-201ENSMUST00000186115 639 ntBASIC19.31■□□□□ 0.68
Krt39Q6IFX4 Gm44549-201ENSMUST00000208351 577 ntBASIC19.31■□□□□ 0.68
Krt39Q6IFX4 Gucd1-211ENSMUST00000219774 806 ntTSL 3 BASIC19.31■□□□□ 0.68
Krt39Q6IFX4 Ddx41-204ENSMUST00000224765 2199 ntBASIC19.31■□□□□ 0.68
Krt39Q6IFX4 Epha10-201ENSMUST00000059343 2544 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Krt39Q6IFX4 Krt86-201ENSMUST00000088049 1960 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Krt39Q6IFX4 Rusc2-202ENSMUST00000098106 5325 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Krt39Q6IFX4 Zfp691-202ENSMUST00000106355 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Krt39Q6IFX4 Pomp-201ENSMUST00000031654 1579 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Krt39Q6IFX4 Espn-209ENSMUST00000105655 1350 ntTSL 5 BASIC19.31■□□□□ 0.68
Krt39Q6IFX4 Espn-211ENSMUST00000105657 1375 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Krt39Q6IFX4 Gm21974-201ENSMUST00000126662 2037 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
Krt39Q6IFX4 Fam126a-202ENSMUST00000101513 1679 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Krt39Q6IFX4 Dhx32-201ENSMUST00000033290 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Krt39Q6IFX4 Ubr5-201ENSMUST00000110336 9242 ntTSL 5 BASIC19.3■□□□□ 0.68
Krt39Q6IFX4 Efnb2-201ENSMUST00000001319 4793 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Krt39Q6IFX4 B4galnt4-201ENSMUST00000048002 3556 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Krt39Q6IFX4 Gm7290-201ENSMUST00000104990 617 ntBASIC19.3■□□□□ 0.68
Krt39Q6IFX4 Gm12918-201ENSMUST00000120234 636 ntBASIC19.3■□□□□ 0.68
Krt39Q6IFX4 Gm15710-201ENSMUST00000121821 636 ntBASIC19.3■□□□□ 0.68
Krt39Q6IFX4 Gm5075-201ENSMUST00000196916 622 ntBASIC19.3■□□□□ 0.68
Krt39Q6IFX4 Zfp580-201ENSMUST00000069324 1096 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Krt39Q6IFX4 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
Krt39Q6IFX4 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
Krt39Q6IFX4 Rpl13-ps6-201ENSMUST00000079761 636 ntBASIC19.3■□□□□ 0.68
Krt39Q6IFX4 Rpl13-ps3-201ENSMUST00000079960 624 ntBASIC19.3■□□□□ 0.68
Krt39Q6IFX4 Rtl8b-201ENSMUST00000088778 1232 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
Krt39Q6IFX4 Lrrc47-205ENSMUST00000169622 3468 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Krt39Q6IFX4 Atp6v1g2-201ENSMUST00000068261 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Krt39Q6IFX4 Nfib-205ENSMUST00000107247 3267 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
Krt39Q6IFX4 Klhl5-204ENSMUST00000204097 3149 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Krt39Q6IFX4 Fxyd6-201ENSMUST00000085939 1788 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Krt39Q6IFX4 Zxdc-203ENSMUST00000113539 4864 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Krt39Q6IFX4 Ttc32-202ENSMUST00000219470 1645 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Krt39Q6IFX4 Ccdc105-201ENSMUST00000105383 1714 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Krt39Q6IFX4 Arrb2-202ENSMUST00000084954 1732 ntTSL 5 BASIC19.29■□□□□ 0.68
Krt39Q6IFX4 1700030C12Rik-201ENSMUST00000101462 858 ntTSL 5 BASIC19.29■□□□□ 0.68
Krt39Q6IFX4 Fdx1l-201ENSMUST00000010348 812 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Krt39Q6IFX4 Sarnp-201ENSMUST00000105230 918 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Krt39Q6IFX4 AC153845.2-202ENSMUST00000213372 807 ntTSL 3 BASIC19.29■□□□□ 0.68
Krt39Q6IFX4 6230400D17Rik-202ENSMUST00000224976 1019 ntBASIC19.29■□□□□ 0.68
Krt39Q6IFX4 Gbe1-201ENSMUST00000023393 2846 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
Krt39Q6IFX4 Cdipt-201ENSMUST00000032920 1974 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Krt39Q6IFX4 Cadm3-201ENSMUST00000005470 2518 ntTSL 5 BASIC19.29■□□□□ 0.68
Krt39Q6IFX4 Col15a1-202ENSMUST00000102917 5172 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Krt39Q6IFX4 Tbx21-201ENSMUST00000001484 2488 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Krt39Q6IFX4 Aspscr1-204ENSMUST00000106159 1615 ntTSL 5 BASIC19.29■□□□□ 0.68
Krt39Q6IFX4 Snx15-201ENSMUST00000025702 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Krt39Q6IFX4 Rhod-202ENSMUST00000117462 1495 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Krt39Q6IFX4 Pacsin3-201ENSMUST00000028694 1862 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Krt39Q6IFX4 Msi2-201ENSMUST00000092794 1855 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Krt39Q6IFX4 Mpig6b-201ENSMUST00000097337 2252 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Krt39Q6IFX4 Mmd-201ENSMUST00000004050 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Krt39Q6IFX4 Htatip2-202ENSMUST00000207895 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Krt39Q6IFX4 Hoxb6-201ENSMUST00000000704 1321 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Krt39Q6IFX4 Aurkb-201ENSMUST00000021277 1950 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Krt39Q6IFX4 Nrbp1-207ENSMUST00000202576 2221 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Krt39Q6IFX4 Nrbp1-201ENSMUST00000031034 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Krt39Q6IFX4 Nsmf-203ENSMUST00000100334 2957 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Krt39Q6IFX4 Ppp1r9b-201ENSMUST00000038696 4508 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Krt39Q6IFX4 Atrnl1-201ENSMUST00000077282 6581 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Krt39Q6IFX4 Arl2bp-202ENSMUST00000109527 1133 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Retrieved 100 of 76,532 protein–RNA pairs in 30.1 ms