Protein–RNA interactions for Protein: Q62233

Six3, Homeobox protein SIX3, mousemouse

Predictions only

Length 333 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Six3Q62233 Mir8112-201ENSMUST00000184382 131 ntBASIC17.1■□□□□ 0.33
Six3Q62233 Gtf2h2-201ENSMUST00000066940 1065 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Six3Q62233 Gm26657-201ENSMUST00000181745 1308 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
Six3Q62233 Nxnl1-201ENSMUST00000048243 2285 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
Six3Q62233 Mmp28-201ENSMUST00000021020 2311 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
Six3Q62233 Trabd-206ENSMUST00000169891 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Six3Q62233 Sh3bp1-201ENSMUST00000001226 2510 ntTSL 5 BASIC17.1■□□□□ 0.33
Six3Q62233 Arhgap8-201ENSMUST00000006029 1527 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
Six3Q62233 Ntrk1-201ENSMUST00000029712 2588 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Six3Q62233 Zfp691-202ENSMUST00000106355 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Six3Q62233 Mink1-205ENSMUST00000102559 4865 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
Six3Q62233 Ngb-201ENSMUST00000021420 1616 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
Six3Q62233 Fam126a-202ENSMUST00000101513 1679 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Six3Q62233 Arhgef16-201ENSMUST00000030898 2860 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Six3Q62233 Cyr61-201ENSMUST00000029846 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Six3Q62233 Col15a1-201ENSMUST00000082303 5102 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
Six3Q62233 Mfsd13a-202ENSMUST00000128041 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Six3Q62233 Fiz1-203ENSMUST00000167804 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Six3Q62233 Gorasp2-203ENSMUST00000112205 1196 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Six3Q62233 Josd2-203ENSMUST00000118493 922 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
Six3Q62233 AC164629.5-201ENSMUST00000220387 632 ntBASIC17.09■□□□□ 0.33
Six3Q62233 Mrps10-201ENSMUST00000060752 1109 ntTSL 5 BASIC17.09■□□□□ 0.33
Six3Q62233 Tex264-203ENSMUST00000169068 1364 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Six3Q62233 Rprm-201ENSMUST00000100089 1460 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
Six3Q62233 2010016I18Rik-204ENSMUST00000190356 1562 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Six3Q62233 Hmga1-204ENSMUST00000118570 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Six3Q62233 Arhgef25-212ENSMUST00000222006 1896 ntTSL 5 BASIC17.09■□□□□ 0.33
Six3Q62233 Zfp92-202ENSMUST00000086470 2050 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Six3Q62233 Rtkn-201ENSMUST00000065512 2191 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Six3Q62233 Cmip-202ENSMUST00000166750 2408 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
Six3Q62233 Rara-204ENSMUST00000107475 2469 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Six3Q62233 Mapkapk3-201ENSMUST00000035194 2816 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Six3Q62233 Ptp4a2-201ENSMUST00000030578 3646 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
Six3Q62233 Sntg2-201ENSMUST00000021004 2411 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Six3Q62233 Senp3-202ENSMUST00000066760 2219 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Six3Q62233 Sept8-203ENSMUST00000120878 1806 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.33
Six3Q62233 F2rl3-201ENSMUST00000058099 1751 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Six3Q62233 Ruvbl1-201ENSMUST00000032165 1675 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Six3Q62233 Gm13401-201ENSMUST00000117074 291 ntBASIC17.08■□□□□ 0.32
Six3Q62233 Gm12216-203ENSMUST00000121435 655 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
Six3Q62233 Bex2-201ENSMUST00000049130 903 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Six3Q62233 Gm9970-201ENSMUST00000068997 558 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
Six3Q62233 Dnm1-216ENSMUST00000201494 2732 ntTSL 5 BASIC17.08■□□□□ 0.32
Six3Q62233 Camk2d-228ENSMUST00000200171 5396 ntTSL 5 BASIC17.08■□□□□ 0.32
Six3Q62233 Otud5-202ENSMUST00000115665 3821 ntTSL 5 BASIC17.08■□□□□ 0.32
Six3Q62233 Dhx32-203ENSMUST00000106139 2233 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Six3Q62233 Pgm3-202ENSMUST00000072585 1920 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Six3Q62233 Ust-201ENSMUST00000061601 4228 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Six3Q62233 Hmces-202ENSMUST00000113606 1572 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Six3Q62233 A530016L24Rik-202ENSMUST00000223266 1547 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Six3Q62233 Map3k10-202ENSMUST00000108341 3403 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
Six3Q62233 Dbn1-202ENSMUST00000109921 2378 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Six3Q62233 P2rx5-201ENSMUST00000006104 2395 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Six3Q62233 Csrp2-201ENSMUST00000020403 1384 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Six3Q62233 Rilpl2-201ENSMUST00000031347 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Six3Q62233 Paqr3-201ENSMUST00000069453 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Six3Q62233 Nptxr-203ENSMUST00000175858 4948 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Six3Q62233 Zfp428-203ENSMUST00000177205 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Six3Q62233 Tspan2-203ENSMUST00000196611 682 ntTSL 5 BASIC17.07■□□□□ 0.32
Six3Q62233 Gm19391-201ENSMUST00000196653 999 ntTSL 3 BASIC17.07■□□□□ 0.32
Six3Q62233 Gm2559-201ENSMUST00000201323 363 ntBASIC17.07■□□□□ 0.32
Six3Q62233 Rab34-209ENSMUST00000207728 567 ntTSL 2 BASIC17.07■□□□□ 0.32
Six3Q62233 Gm4968-201ENSMUST00000071458 858 ntBASIC17.07■□□□□ 0.32
Six3Q62233 5031425F14Rik-201ENSMUST00000127920 2098 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Six3Q62233 Clcn2-202ENSMUST00000120099 2812 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
Six3Q62233 Fam110a-204ENSMUST00000109865 1853 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
Six3Q62233 Zdhhc24-201ENSMUST00000006632 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Six3Q62233 Puf60-201ENSMUST00000002599 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Six3Q62233 Sept4-205ENSMUST00000107962 1678 ntAPPRIS ALT1 TSL 5 BASIC17.07■□□□□ 0.32
Six3Q62233 Evx2-201ENSMUST00000001867 4191 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Six3Q62233 Trmo-202ENSMUST00000086563 1554 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
Six3Q62233 Slc35g2-201ENSMUST00000093792 1590 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
Six3Q62233 Ppp1r36-201ENSMUST00000063977 1515 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
Six3Q62233 Lin9-203ENSMUST00000192561 3160 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Six3Q62233 Msx2-201ENSMUST00000021922 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Six3Q62233 Aida-206ENSMUST00000193625 1810 ntTSL 3 BASIC17.06■□□□□ 0.32
Six3Q62233 Gm10418-201ENSMUST00000100943 576 ntBASIC17.06■□□□□ 0.32
Six3Q62233 Selenos-201ENSMUST00000101801 1191 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Six3Q62233 Vkorc1-202ENSMUST00000119922 387 ntTSL 3 BASIC17.06■□□□□ 0.32
Six3Q62233 Sco2-201ENSMUST00000167643 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Six3Q62233 Gm3807-201ENSMUST00000193520 1168 ntBASIC17.06■□□□□ 0.32
Six3Q62233 Crybb1-201ENSMUST00000031286 882 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Six3Q62233 Car2-201ENSMUST00000029078 1788 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Six3Q62233 Dock9-202ENSMUST00000100299 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Six3Q62233 Tgds-201ENSMUST00000022727 1682 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Six3Q62233 Lrrc43-202ENSMUST00000121444 2016 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Six3Q62233 Larp1b-206ENSMUST00000191872 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Six3Q62233 Atp6v1g2-201ENSMUST00000068261 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Six3Q62233 Tm2d3-202ENSMUST00000065574 1478 ntAPPRIS P4 TSL 1 (best) BASIC17.05■□□□□ 0.32
Six3Q62233 Clstn2-201ENSMUST00000035027 4365 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Six3Q62233 Slc22a3-201ENSMUST00000024595 3501 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Six3Q62233 Nagpa-203ENSMUST00000147567 2230 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Six3Q62233 Rmdn3-201ENSMUST00000094695 2249 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Six3Q62233 Lonp1-201ENSMUST00000047226 2963 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Six3Q62233 Atp1b1-201ENSMUST00000027863 2580 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Six3Q62233 Hpn-209ENSMUST00000168884 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Six3Q62233 Kcnab3-201ENSMUST00000018614 2538 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Six3Q62233 Trip10-205ENSMUST00000224885 2136 ntAPPRIS ALT2 BASIC17.05■□□□□ 0.32
Six3Q62233 Adrb2-201ENSMUST00000053640 2143 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
Six3Q62233 Csnk1g3-201ENSMUST00000069597 4394 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 23.5 ms