Protein–RNA interactions for Protein: Q5QNQ9

Col27a1, Collagen alpha-1(XXVII) chain, mousemouse

Predictions only

Length 1,845 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col27a1Q5QNQ9 Gm43575-201ENSMUST00000196420 516 ntBASIC16.93■□□□□ 0.3
Col27a1Q5QNQ9 Gm43332-201ENSMUST00000202511 1044 ntBASIC16.93■□□□□ 0.3
Col27a1Q5QNQ9 Flot1-209ENSMUST00000174080 1383 ntTSL 5 BASIC16.93■□□□□ 0.3
Col27a1Q5QNQ9 H2-DMb1-201ENSMUST00000114232 1404 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Col27a1Q5QNQ9 Pdp1-206ENSMUST00000108302 2525 ntTSL 3 BASIC16.93■□□□□ 0.3
Col27a1Q5QNQ9 Ssx2ip-203ENSMUST00000106151 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Col27a1Q5QNQ9 Ube2d2a-202ENSMUST00000170693 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Col27a1Q5QNQ9 Rprl3-201ENSMUST00000157400 290 ntBASIC16.93■□□□□ 0.3
Col27a1Q5QNQ9 Tmem33-206ENSMUST00000162543 664 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Col27a1Q5QNQ9 Gm19345-201ENSMUST00000172815 993 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Col27a1Q5QNQ9 Cyba-202ENSMUST00000212600 638 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Col27a1Q5QNQ9 Aldoa-ps3-201ENSMUST00000217558 306 ntBASIC16.93■□□□□ 0.3
Col27a1Q5QNQ9 Cda-201ENSMUST00000030535 846 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Col27a1Q5QNQ9 Isg15-201ENSMUST00000085425 756 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Col27a1Q5QNQ9 Skp1a-203ENSMUST00000109072 1754 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
Col27a1Q5QNQ9 Gcat-202ENSMUST00000171999 1763 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Col27a1Q5QNQ9 Gpr6-201ENSMUST00000061796 1786 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Col27a1Q5QNQ9 AW011738-201ENSMUST00000105140 1848 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
Col27a1Q5QNQ9 Btnl9-202ENSMUST00000066531 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Col27a1Q5QNQ9 Cln5-201ENSMUST00000022721 2445 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Col27a1Q5QNQ9 Usp12-201ENSMUST00000085614 4327 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Col27a1Q5QNQ9 Amn1-201ENSMUST00000095319 1369 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Col27a1Q5QNQ9 BC031181-201ENSMUST00000040284 1047 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Col27a1Q5QNQ9 Tmem128-201ENSMUST00000087511 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Col27a1Q5QNQ9 Lefty1-201ENSMUST00000037361 1620 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Col27a1Q5QNQ9 Ghrhr-201ENSMUST00000063578 1550 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Col27a1Q5QNQ9 Mgrn1-201ENSMUST00000023159 3293 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Col27a1Q5QNQ9 Cnn2-202ENSMUST00000105374 926 ntTSL 5 BASIC16.91■□□□□ 0.3
Col27a1Q5QNQ9 Higd1b-202ENSMUST00000107072 497 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
Col27a1Q5QNQ9 Higd1b-203ENSMUST00000107073 530 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
Col27a1Q5QNQ9 Rbmx-206ENSMUST00000143310 1296 ntTSL 5 BASIC16.91■□□□□ 0.3
Col27a1Q5QNQ9 Gm2213-201ENSMUST00000197485 688 ntBASIC16.91■□□□□ 0.3
Col27a1Q5QNQ9 Gm45208-202ENSMUST00000208156 1153 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
Col27a1Q5QNQ9 Higd1b-201ENSMUST00000021302 735 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Col27a1Q5QNQ9 Gm6296-201ENSMUST00000222599 943 ntBASIC16.91■□□□□ 0.3
Col27a1Q5QNQ9 Hsf1-204ENSMUST00000226872 2104 ntBASIC16.91■□□□□ 0.3
Col27a1Q5QNQ9 Psmg3-201ENSMUST00000031531 883 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Col27a1Q5QNQ9 Hist1h1a-201ENSMUST00000055770 741 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
Col27a1Q5QNQ9 Dupd1-201ENSMUST00000073870 1138 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Col27a1Q5QNQ9 Gm42922-201ENSMUST00000195887 2078 ntBASIC16.91■□□□□ 0.3
Col27a1Q5QNQ9 Zfp800-203ENSMUST00000115321 2699 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Col27a1Q5QNQ9 Mcfd2-201ENSMUST00000024963 1823 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Col27a1Q5QNQ9 Hes3-201ENSMUST00000094438 1829 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Col27a1Q5QNQ9 Iqcd-202ENSMUST00000094391 1673 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Col27a1Q5QNQ9 Sh3yl1-202ENSMUST00000110880 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Col27a1Q5QNQ9 Pacsin2-201ENSMUST00000056177 2795 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Col27a1Q5QNQ9 Npcd-202ENSMUST00000089299 1453 ntAPPRIS P4 TSL 1 (best) BASIC16.91■□□□□ 0.3
Col27a1Q5QNQ9 Gpd1l-201ENSMUST00000084853 1436 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Col27a1Q5QNQ9 Strn3-201ENSMUST00000013130 3046 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Col27a1Q5QNQ9 Snx4-201ENSMUST00000023502 2442 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Col27a1Q5QNQ9 Cox6c-205ENSMUST00000156915 606 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
Col27a1Q5QNQ9 Gm26695-201ENSMUST00000180920 1251 ntTSL 5 BASIC16.91■□□□□ 0.3
Col27a1Q5QNQ9 4933406B15Rik-201ENSMUST00000220065 1182 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Col27a1Q5QNQ9 Ptprcap-201ENSMUST00000061086 927 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Col27a1Q5QNQ9 2810408A11Rik-203ENSMUST00000102580 1640 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
Col27a1Q5QNQ9 Aida-206ENSMUST00000193625 1810 ntTSL 3 BASIC16.9■□□□□ 0.3
Col27a1Q5QNQ9 Aen-202ENSMUST00000107423 2230 ntAPPRIS P3 TSL 5 BASIC16.9■□□□□ 0.3
Col27a1Q5QNQ9 Irx2-201ENSMUST00000074372 2625 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Col27a1Q5QNQ9 Ddost-201ENSMUST00000030538 2120 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Col27a1Q5QNQ9 Prmt2-202ENSMUST00000099571 2052 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
Col27a1Q5QNQ9 Get4-202ENSMUST00000110878 1180 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Col27a1Q5QNQ9 Gm20878-206ENSMUST00000153997 903 ntAPPRIS P2 TSL 2 BASIC16.9■□□□□ 0.3
Col27a1Q5QNQ9 Banf1-202ENSMUST00000170010 742 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Col27a1Q5QNQ9 Ciao1-204ENSMUST00000174030 1109 ntTSL 5 BASIC16.9■□□□□ 0.3
Col27a1Q5QNQ9 Gm19553-201ENSMUST00000175723 494 ntTSL 5 BASIC16.9■□□□□ 0.3
Col27a1Q5QNQ9 6430573P05Rik-202ENSMUST00000192648 597 ntTSL 3 BASIC16.9■□□□□ 0.3
Col27a1Q5QNQ9 Vsig2-201ENSMUST00000002008 1166 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Col27a1Q5QNQ9 Gm40513-201ENSMUST00000217258 411 ntTSL 3 BASIC16.9■□□□□ 0.3
Col27a1Q5QNQ9 Rfc4-201ENSMUST00000023598 1228 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Col27a1Q5QNQ9 Eif5a-207ENSMUST00000108610 1409 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Col27a1Q5QNQ9 Man2c1os-201ENSMUST00000125333 1910 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
Col27a1Q5QNQ9 Gins4-201ENSMUST00000033950 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
Col27a1Q5QNQ9 AC153794.1-201ENSMUST00000169148 126 ntBASIC16.89■□□□□ 0.29
Col27a1Q5QNQ9 Smarca5-ps-202ENSMUST00000171805 1284 ntBASIC16.89■□□□□ 0.29
Col27a1Q5QNQ9 Gm6376-201ENSMUST00000209407 580 ntBASIC16.89■□□□□ 0.29
Col27a1Q5QNQ9 Ndufb9-201ENSMUST00000022980 704 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Col27a1Q5QNQ9 Slc10a4-201ENSMUST00000031127 2106 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Col27a1Q5QNQ9 Ly6g6f-201ENSMUST00000038507 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Col27a1Q5QNQ9 Chd3os-201ENSMUST00000129321 2081 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Col27a1Q5QNQ9 Ero1lb-203ENSMUST00000221560 1964 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Col27a1Q5QNQ9 Slc35f5-201ENSMUST00000027580 2733 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Col27a1Q5QNQ9 Sh3glb1-205ENSMUST00000199854 1416 ntTSL 5 BASIC16.89■□□□□ 0.29
Col27a1Q5QNQ9 Enoph1-201ENSMUST00000031268 1420 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Col27a1Q5QNQ9 Zfp213-201ENSMUST00000095606 2672 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Col27a1Q5QNQ9 Slc39a5-202ENSMUST00000167859 2025 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Col27a1Q5QNQ9 Gm28411-202ENSMUST00000191318 464 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Col27a1Q5QNQ9 Tmem205-201ENSMUST00000046831 785 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Col27a1Q5QNQ9 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Col27a1Q5QNQ9 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
Col27a1Q5QNQ9 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
Col27a1Q5QNQ9 Eif6-202ENSMUST00000109638 1382 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Col27a1Q5QNQ9 Trp73-203ENSMUST00000105643 1916 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
Col27a1Q5QNQ9 Creld1-201ENSMUST00000032422 2306 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Col27a1Q5QNQ9 Cnbp-202ENSMUST00000113617 952 ntTSL 5 BASIC16.88■□□□□ 0.29
Col27a1Q5QNQ9 Frs3os-201ENSMUST00000136531 978 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Col27a1Q5QNQ9 Gm12973-201ENSMUST00000143967 607 ntTSL 5 BASIC16.88■□□□□ 0.29
Col27a1Q5QNQ9 Lgals3-203ENSMUST00000146468 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Col27a1Q5QNQ9 Gm27867-201ENSMUST00000184778 125 ntBASIC16.88■□□□□ 0.29
Col27a1Q5QNQ9 Hist1h2ai-201ENSMUST00000070124 393 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
Col27a1Q5QNQ9 Hist1h2an-201ENSMUST00000091751 393 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
Retrieved 100 of 76,532 protein–RNA pairs in 23.6 ms