Protein–RNA interactions for Protein: Q5NCP0

Rnf43, E3 ubiquitin-protein ligase RNF43, mousemouse

Predictions only

Length 784 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf43Q5NCP0 Gm11748-201ENSMUST00000153825 1498 ntTSL 2 BASIC17.78■□□□□ 0.44
Rnf43Q5NCP0 Tctex1d4-201ENSMUST00000062206 990 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Rnf43Q5NCP0 Trim47-202ENSMUST00000106441 2192 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Rnf43Q5NCP0 Gpc6-204ENSMUST00000125435 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Rnf43Q5NCP0 Anks1b-217ENSMUST00000182550 1868 ntTSL 5 BASIC17.78■□□□□ 0.44
Rnf43Q5NCP0 Cers1-202ENSMUST00000140239 2711 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Rnf43Q5NCP0 Fam71b-201ENSMUST00000063166 2185 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Rnf43Q5NCP0 Gm44832-201ENSMUST00000208849 2303 ntBASIC17.77■□□□□ 0.44
Rnf43Q5NCP0 Gm38308-201ENSMUST00000194934 1809 ntBASIC17.77■□□□□ 0.44
Rnf43Q5NCP0 Spsb2-203ENSMUST00000112473 1322 ntBASIC17.77■□□□□ 0.44
Rnf43Q5NCP0 Gm11747-201ENSMUST00000142751 1648 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Rnf43Q5NCP0 Rab3d-202ENSMUST00000119055 694 ntTSL 3 BASIC17.77■□□□□ 0.44
Rnf43Q5NCP0 Mras-203ENSMUST00000122384 1122 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Rnf43Q5NCP0 Pabpc1l2b-ps-201ENSMUST00000124538 690 ntBASIC17.77■□□□□ 0.44
Rnf43Q5NCP0 Ramp2-204ENSMUST00000129680 1178 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Rnf43Q5NCP0 Psme2-208ENSMUST00000161807 962 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Rnf43Q5NCP0 Gm26827-201ENSMUST00000181911 148 ntTSL 5 BASIC17.77■□□□□ 0.44
Rnf43Q5NCP0 Il3ra-202ENSMUST00000223589 738 ntBASIC17.77■□□□□ 0.44
Rnf43Q5NCP0 Insl3-201ENSMUST00000034261 623 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Rnf43Q5NCP0 Cltb-201ENSMUST00000049575 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Rnf43Q5NCP0 Manbal-201ENSMUST00000081202 1107 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Rnf43Q5NCP0 Fthl17f-201ENSMUST00000097029 847 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
Rnf43Q5NCP0 Ing4-205ENSMUST00000140131 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Rnf43Q5NCP0 Fam131c-201ENSMUST00000006380 1433 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Rnf43Q5NCP0 Yipf2-203ENSMUST00000180365 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Rnf43Q5NCP0 Tmem47-203ENSMUST00000171953 1801 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Rnf43Q5NCP0 Swsap1-201ENSMUST00000053583 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Rnf43Q5NCP0 Eml4-203ENSMUST00000112363 5238 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Rnf43Q5NCP0 Acvr1-201ENSMUST00000056376 2394 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Rnf43Q5NCP0 Leng1-201ENSMUST00000019878 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Rnf43Q5NCP0 Maff-201ENSMUST00000096350 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Rnf43Q5NCP0 Mrpl9-201ENSMUST00000029786 1612 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Rnf43Q5NCP0 Ube2q2-201ENSMUST00000059555 3456 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
Rnf43Q5NCP0 Nmnat3-202ENSMUST00000112937 1898 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Rnf43Q5NCP0 Gm7854-202ENSMUST00000187409 1433 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Rnf43Q5NCP0 Pgam1-ps2-201ENSMUST00000117129 765 ntBASIC17.76■□□□□ 0.43
Rnf43Q5NCP0 Hnrnph3-203ENSMUST00000119814 682 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Rnf43Q5NCP0 Fxyd5-208ENSMUST00000161805 1166 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
Rnf43Q5NCP0 C130032M10Rik-201ENSMUST00000180393 728 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
Rnf43Q5NCP0 Gm29518-201ENSMUST00000190858 372 ntBASIC17.76■□□□□ 0.43
Rnf43Q5NCP0 Gm16054-201ENSMUST00000139469 1819 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Rnf43Q5NCP0 Bcs1l-202ENSMUST00000113732 1679 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
Rnf43Q5NCP0 Slc9a5-201ENSMUST00000073149 3499 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Rnf43Q5NCP0 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC17.76■□□□□ 0.43
Rnf43Q5NCP0 Neil2-201ENSMUST00000038229 1932 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Rnf43Q5NCP0 Ssx2ip-204ENSMUST00000106153 3446 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
Rnf43Q5NCP0 Dus3l-201ENSMUST00000007747 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Rnf43Q5NCP0 Tlcd1-201ENSMUST00000092880 2700 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Rnf43Q5NCP0 Psme3-201ENSMUST00000019470 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Rnf43Q5NCP0 Fam166b-201ENSMUST00000052829 1349 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Rnf43Q5NCP0 Larp1b-202ENSMUST00000048490 2354 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Rnf43Q5NCP0 Magi3-203ENSMUST00000122303 3827 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
Rnf43Q5NCP0 Plac9a-201ENSMUST00000052286 1555 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Rnf43Q5NCP0 Soga1-201ENSMUST00000069098 7864 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Rnf43Q5NCP0 Ubr5-201ENSMUST00000110336 9242 ntTSL 5 BASIC17.75■□□□□ 0.43
Rnf43Q5NCP0 Rnf112-201ENSMUST00000054927 3086 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Rnf43Q5NCP0 Hmgxb3-201ENSMUST00000091884 5101 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Rnf43Q5NCP0 Irak1bp1-202ENSMUST00000113245 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Rnf43Q5NCP0 1700024G13Rik-201ENSMUST00000100723 850 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Rnf43Q5NCP0 Aicda-202ENSMUST00000160685 1292 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Rnf43Q5NCP0 Ndufs7-201ENSMUST00000020361 758 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Rnf43Q5NCP0 Shc3-203ENSMUST00000223543 1241 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Rnf43Q5NCP0 Pigf-201ENSMUST00000024957 988 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Rnf43Q5NCP0 Atg101-201ENSMUST00000048393 1230 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Rnf43Q5NCP0 Alkbh2-201ENSMUST00000053657 1073 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Rnf43Q5NCP0 Krtcap3-201ENSMUST00000054829 904 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Rnf43Q5NCP0 BC048679-201ENSMUST00000073406 522 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
Rnf43Q5NCP0 Gm45141-201ENSMUST00000206502 1888 ntBASIC17.75■□□□□ 0.43
Rnf43Q5NCP0 Gas1-201ENSMUST00000065086 2961 ntAPPRIS ALT2 BASIC17.75■□□□□ 0.43
Rnf43Q5NCP0 Schip1-201ENSMUST00000029346 2201 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Rnf43Q5NCP0 Stac2-201ENSMUST00000017544 3050 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Rnf43Q5NCP0 Itgb5-201ENSMUST00000069345 3056 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Rnf43Q5NCP0 Lrrc36-202ENSMUST00000109355 2411 ntAPPRIS P2 TSL 5 BASIC17.74■□□□□ 0.43
Rnf43Q5NCP0 Mark2-203ENSMUST00000051711 2867 ntAPPRIS P4 TSL 1 (best) BASIC17.74■□□□□ 0.43
Rnf43Q5NCP0 Srcin1-201ENSMUST00000107590 5493 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
Rnf43Q5NCP0 Mmp23-201ENSMUST00000030937 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Rnf43Q5NCP0 Cacnb1-204ENSMUST00000107561 1778 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Rnf43Q5NCP0 Aup1-201ENSMUST00000092618 1769 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Rnf43Q5NCP0 Larp1b-206ENSMUST00000191872 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Rnf43Q5NCP0 Sptbn4-201ENSMUST00000011895 8747 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Rnf43Q5NCP0 Krtap1-4-201ENSMUST00000100479 593 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
Rnf43Q5NCP0 4930505N22Rik-201ENSMUST00000181820 945 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Rnf43Q5NCP0 Pagr1a-203ENSMUST00000206416 558 ntTSL 3 BASIC17.74■□□□□ 0.43
Rnf43Q5NCP0 Gm9731-201ENSMUST00000209480 747 ntBASIC17.74■□□□□ 0.43
Rnf43Q5NCP0 AC130713.1-201ENSMUST00000228853 1096 ntBASIC17.74■□□□□ 0.43
Rnf43Q5NCP0 Olfr317-201ENSMUST00000075607 1128 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
Rnf43Q5NCP0 Taar2-201ENSMUST00000079134 1020 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Rnf43Q5NCP0 Gm45606-201ENSMUST00000209836 2795 ntBASIC17.74■□□□□ 0.43
Rnf43Q5NCP0 Herpud2-201ENSMUST00000008573 2781 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Rnf43Q5NCP0 Cdca4-201ENSMUST00000062092 2425 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Rnf43Q5NCP0 Lrrfip1-201ENSMUST00000068116 2050 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
Rnf43Q5NCP0 Lrch3-201ENSMUST00000023491 5536 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
Rnf43Q5NCP0 U2af2-201ENSMUST00000005041 2183 ntAPPRIS ALT1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Rnf43Q5NCP0 Pdia6-201ENSMUST00000057288 2175 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Rnf43Q5NCP0 Fam78b-205ENSMUST00000165874 4986 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Rnf43Q5NCP0 4430402I18Rik-205ENSMUST00000162110 1559 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
Rnf43Q5NCP0 Dtwd2-201ENSMUST00000025383 2476 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Rnf43Q5NCP0 Gm37820-201ENSMUST00000194021 2147 ntBASIC17.74■□□□□ 0.43
Rnf43Q5NCP0 Sapcd2-202ENSMUST00000100323 1761 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
Rnf43Q5NCP0 Runx2-204ENSMUST00000159943 2316 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 38.6 ms