Protein–RNA interactions for Protein: Q5NCC3

Trim41, E3 ubiquitin-protein ligase TRIM41, mousemouse

Predictions only

Length 630 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim41Q5NCC3 Klf13-202ENSMUST00000183817 599 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
Trim41Q5NCC3 Slc30a4-201ENSMUST00000005952 5458 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
Trim41Q5NCC3 Lhx8-205ENSMUST00000205251 1729 ntAPPRIS P1 TSL 5 BASIC30.33■■■□□ 2.45
Trim41Q5NCC3 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
Trim41Q5NCC3 Brd1-201ENSMUST00000088911 4702 ntTSL 1 (best) BASIC30.32■■■□□ 2.45
Trim41Q5NCC3 Fam149b-216ENSMUST00000225942 2151 ntAPPRIS ALT2 BASIC30.32■■■□□ 2.44
Trim41Q5NCC3 Pgf-204ENSMUST00000223220 2080 ntAPPRIS ALT2 TSL 1 (best) BASIC30.32■■■□□ 2.44
Trim41Q5NCC3 Gabbr1-202ENSMUST00000172789 1460 ntTSL 1 (best) BASIC30.32■■■□□ 2.44
Trim41Q5NCC3 Agap2-202ENSMUST00000217941 5573 ntAPPRIS ALT2 TSL 1 (best) BASIC30.32■■■□□ 2.44
Trim41Q5NCC3 Dab2-208ENSMUST00000160134 1374 ntAPPRIS ALT2 TSL 5 BASIC30.32■■■□□ 2.44
Trim41Q5NCC3 Spdya-202ENSMUST00000124001 1247 ntTSL 1 (best) BASIC30.32■■■□□ 2.44
Trim41Q5NCC3 Tssc4-208ENSMUST00000208779 647 ntTSL 1 (best) BASIC30.32■■■□□ 2.44
Trim41Q5NCC3 Lce3c-201ENSMUST00000055375 567 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
Trim41Q5NCC3 Fam92a-201ENSMUST00000087052 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC30.32■■■□□ 2.44
Trim41Q5NCC3 Dlgap1-209ENSMUST00000140728 2173 ntAPPRIS ALT2 TSL 5 BASIC30.32■■■□□ 2.44
Trim41Q5NCC3 Sept4-205ENSMUST00000107962 1678 ntAPPRIS ALT1 TSL 5 BASIC30.32■■■□□ 2.44
Trim41Q5NCC3 Kmt5b-204ENSMUST00000113970 2975 ntAPPRIS ALT2 TSL 1 (best) BASIC30.32■■■□□ 2.44
Trim41Q5NCC3 Eif4g3-201ENSMUST00000058133 2663 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
Trim41Q5NCC3 Srsf11-202ENSMUST00000072875 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC30.31■■■□□ 2.44
Trim41Q5NCC3 Camk2b-202ENSMUST00000019133 2223 ntTSL 5 BASIC30.31■■■□□ 2.44
Trim41Q5NCC3 Fam126a-202ENSMUST00000101513 1679 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
Trim41Q5NCC3 Kxd1-202ENSMUST00000117580 696 ntTSL 5 BASIC30.31■■■□□ 2.44
Trim41Q5NCC3 Gm29518-201ENSMUST00000190858 372 ntBASIC30.31■■■□□ 2.44
Trim41Q5NCC3 Gm43791-201ENSMUST00000202914 468 ntTSL 5 BASIC30.31■■■□□ 2.44
Trim41Q5NCC3 Mmp11-201ENSMUST00000000924 2288 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
Trim41Q5NCC3 Lrch4-204ENSMUST00000176667 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC30.31■■■□□ 2.44
Trim41Q5NCC3 Arhgef1-204ENSMUST00000117796 3508 ntAPPRIS ALT2 TSL 1 (best) BASIC30.31■■■□□ 2.44
Trim41Q5NCC3 Nfs1-201ENSMUST00000029147 2051 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
Trim41Q5NCC3 Nagk-203ENSMUST00000113851 1323 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
Trim41Q5NCC3 Elmo2-204ENSMUST00000103088 3052 ntAPPRIS ALT2 TSL 5 BASIC30.3■■■□□ 2.44
Trim41Q5NCC3 Sos2-206ENSMUST00000183277 4512 ntAPPRIS ALT2 TSL 5 BASIC30.3■■■□□ 2.44
Trim41Q5NCC3 Nck2-201ENSMUST00000086421 2772 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
Trim41Q5NCC3 Ripk2-201ENSMUST00000037035 2692 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
Trim41Q5NCC3 Gm28050-201ENSMUST00000124394 449 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
Trim41Q5NCC3 Smim4-204ENSMUST00000203261 1219 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
Trim41Q5NCC3 AC120002.2-201ENSMUST00000220205 773 ntBASIC30.29■■■□□ 2.44
Trim41Q5NCC3 Pgrmc1-201ENSMUST00000073339 1857 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
Trim41Q5NCC3 Sema6d-202ENSMUST00000076335 6276 ntAPPRIS ALT2 TSL 1 (best) BASIC30.29■■■□□ 2.44
Trim41Q5NCC3 Syndig1-202ENSMUST00000109935 2050 ntAPPRIS P1 TSL 5 BASIC30.29■■■□□ 2.44
Trim41Q5NCC3 Chst8-203ENSMUST00000154629 2079 ntTSL 5 BASIC30.29■■■□□ 2.44
Trim41Q5NCC3 Pex14-201ENSMUST00000103217 2006 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
Trim41Q5NCC3 Prss53-202ENSMUST00000205300 1662 ntTSL 1 (best) BASIC30.28■■■□□ 2.44
Trim41Q5NCC3 Gm13420-201ENSMUST00000129574 1091 ntAPPRIS P1 TSL 5 BASIC30.28■■■□□ 2.44
Trim41Q5NCC3 Pigf-201ENSMUST00000024957 988 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
Trim41Q5NCC3 BC048679-201ENSMUST00000073406 522 ntAPPRIS P3 TSL 1 (best) BASIC30.28■■■□□ 2.44
Trim41Q5NCC3 Podxl-201ENSMUST00000026698 5379 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
Trim41Q5NCC3 AW011738-201ENSMUST00000105140 1848 ntAPPRIS P1 BASIC30.28■■■□□ 2.44
Trim41Q5NCC3 Shc3-201ENSMUST00000021898 1537 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
Trim41Q5NCC3 Gm35558-201ENSMUST00000222675 2219 ntBASIC30.27■■■□□ 2.44
Trim41Q5NCC3 Polr3d-201ENSMUST00000000793 2016 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
Trim41Q5NCC3 Gm5464-201ENSMUST00000100453 2156 ntAPPRIS P1 BASIC30.27■■■□□ 2.44
Trim41Q5NCC3 Tex30-213ENSMUST00000156392 1122 ntAPPRIS P1 TSL 5 BASIC30.27■■■□□ 2.44
Trim41Q5NCC3 H2afz-207ENSMUST00000174561 810 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
Trim41Q5NCC3 Gm18206-201ENSMUST00000207027 926 ntBASIC30.27■■■□□ 2.44
Trim41Q5NCC3 AC156832.2-201ENSMUST00000216217 1295 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
Trim41Q5NCC3 4930448E22Rik-201ENSMUST00000181712 1581 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
Trim41Q5NCC3 Fam118a-201ENSMUST00000023069 2543 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
Trim41Q5NCC3 Gpsm3-201ENSMUST00000038244 1343 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.44
Trim41Q5NCC3 Galk2-202ENSMUST00000094604 1928 ntAPPRIS ALT2 TSL 1 (best) BASIC30.26■■■□□ 2.44
Trim41Q5NCC3 Cdk11b-202ENSMUST00000105598 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC30.26■■■□□ 2.43
Trim41Q5NCC3 Cdc34-202ENSMUST00000166603 1078 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
Trim41Q5NCC3 Nabp2-204ENSMUST00000166608 979 ntTSL 5 BASIC30.26■■■□□ 2.43
Trim41Q5NCC3 Mir3081-201ENSMUST00000175305 84 ntBASIC30.26■■■□□ 2.43
Trim41Q5NCC3 Tmem178b-203ENSMUST00000180886 712 ntTSL 5 BASIC30.26■■■□□ 2.43
Trim41Q5NCC3 Gm7854-202ENSMUST00000187409 1433 ntTSL 1 (best) BASIC30.26■■■□□ 2.43
Trim41Q5NCC3 Gm38282-201ENSMUST00000192751 695 ntTSL 5 BASIC30.26■■■□□ 2.43
Trim41Q5NCC3 Gm34391-201ENSMUST00000203706 907 ntBASIC30.26■■■□□ 2.43
Trim41Q5NCC3 Kcnk4-201ENSMUST00000025908 1715 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
Trim41Q5NCC3 Creb3l1-201ENSMUST00000028663 2603 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
Trim41Q5NCC3 Tbc1d25-204ENSMUST00000172020 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC30.26■■■□□ 2.43
Trim41Q5NCC3 Ppp2r1b-205ENSMUST00000175640 1523 ntTSL 5 BASIC30.26■■■□□ 2.43
Trim41Q5NCC3 Astn2-202ENSMUST00000084496 4675 ntAPPRIS ALT2 TSL 5 BASIC30.26■■■□□ 2.43
Trim41Q5NCC3 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC30.25■■■□□ 2.43
Trim41Q5NCC3 Spsb2-203ENSMUST00000112473 1322 ntBASIC30.25■■■□□ 2.43
Trim41Q5NCC3 Pigw-202ENSMUST00000108080 1728 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
Trim41Q5NCC3 Ankle1-201ENSMUST00000119976 2136 ntAPPRIS P3 TSL 1 (best) BASIC30.25■■■□□ 2.43
Trim41Q5NCC3 Cacna2d2-205ENSMUST00000168532 5807 ntAPPRIS ALT2 TSL 1 (best) BASIC30.25■■■□□ 2.43
Trim41Q5NCC3 Tmc6-202ENSMUST00000103025 1279 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
Trim41Q5NCC3 1700025N23Rik-201ENSMUST00000186189 915 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
Trim41Q5NCC3 Spem1-201ENSMUST00000045771 1041 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
Trim41Q5NCC3 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
Trim41Q5NCC3 Plekhm2-201ENSMUST00000030751 4154 ntAPPRIS ALT2 TSL 1 (best) BASIC30.25■■■□□ 2.43
Trim41Q5NCC3 Trmt11-201ENSMUST00000019927 2359 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
Trim41Q5NCC3 Fst-202ENSMUST00000223640 2612 ntBASIC30.25■■■□□ 2.43
Trim41Q5NCC3 Hpn-202ENSMUST00000108102 1830 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
Trim41Q5NCC3 Tnk1-202ENSMUST00000108626 1798 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
Trim41Q5NCC3 Galnt9-201ENSMUST00000040001 2883 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
Trim41Q5NCC3 Foxj1-201ENSMUST00000036215 2623 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
Trim41Q5NCC3 Pabpc1l2b-ps-201ENSMUST00000124538 690 ntBASIC30.24■■■□□ 2.43
Trim41Q5NCC3 Gm17349-201ENSMUST00000163472 300 ntAPPRIS P1 TSL 5 BASIC30.24■■■□□ 2.43
Trim41Q5NCC3 Mir1668-201ENSMUST00000184114 107 ntBASIC30.24■■■□□ 2.43
Trim41Q5NCC3 Arl3-201ENSMUST00000026009 822 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
Trim41Q5NCC3 C1qbp-201ENSMUST00000078528 1175 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
Trim41Q5NCC3 Pou2f2-206ENSMUST00000108418 1934 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
Trim41Q5NCC3 Psme4-201ENSMUST00000041231 6491 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
Trim41Q5NCC3 Lgals3-203ENSMUST00000146468 1072 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
Trim41Q5NCC3 Rhox13-201ENSMUST00000152730 876 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
Trim41Q5NCC3 AC148328.1-201ENSMUST00000216448 920 ntTSL 5 BASIC30.23■■■□□ 2.43
Trim41Q5NCC3 Il4i1-201ENSMUST00000033015 2048 ntAPPRIS P3 TSL 1 (best) BASIC30.23■■■□□ 2.43
Trim41Q5NCC3 Gm15645-201ENSMUST00000131504 2208 ntTSL 5 BASIC30.23■■■□□ 2.43
Retrieved 100 of 76,532 protein–RNA pairs in 22.3 ms