Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Gm12979-201ENSMUST00000145488 405 ntTSL 2 BASIC20.57■□□□□ 0.88
Limch1Q3UH68 Scamp4-202ENSMUST00000180350 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Limch1Q3UH68 Gm19610-201ENSMUST00000202894 408 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Limch1Q3UH68 Gm7579-201ENSMUST00000097943 732 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
Limch1Q3UH68 Tspan10-201ENSMUST00000044105 1680 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Limch1Q3UH68 Fam213a-202ENSMUST00000118466 1567 ntAPPRIS ALT1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Limch1Q3UH68 Pea15a-201ENSMUST00000013842 2501 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Limch1Q3UH68 Nrl-201ENSMUST00000062232 2504 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Limch1Q3UH68 Cdc123-201ENSMUST00000043864 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Limch1Q3UH68 Snrnp35-202ENSMUST00000111453 1181 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
Limch1Q3UH68 D330020A13Rik-201ENSMUST00000181956 1069 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
Limch1Q3UH68 Mtag2-201ENSMUST00000058665 714 ntBASIC20.56■□□□□ 0.88
Limch1Q3UH68 Bmyc-201ENSMUST00000061483 983 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
Limch1Q3UH68 Shc3-201ENSMUST00000021898 1537 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Limch1Q3UH68 Phb-204ENSMUST00000125172 1799 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Limch1Q3UH68 Cep57-208ENSMUST00000147115 2262 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Limch1Q3UH68 Mycn-202ENSMUST00000130990 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Limch1Q3UH68 Tmem127-201ENSMUST00000035871 4811 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Limch1Q3UH68 Dnajb9-201ENSMUST00000015049 2461 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Limch1Q3UH68 Espn-206ENSMUST00000103196 1323 ntTSL 5 BASIC20.55■□□□□ 0.88
Limch1Q3UH68 1700041G16Rik-202ENSMUST00000186344 1824 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Limch1Q3UH68 Ntn1-201ENSMUST00000021284 5738 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
Limch1Q3UH68 Zc3hav1l-201ENSMUST00000058524 6536 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Limch1Q3UH68 Gm10461-201ENSMUST00000202073 4786 ntBASIC20.55■□□□□ 0.88
Limch1Q3UH68 Gm44618-201ENSMUST00000208431 2262 ntTSL 3 BASIC20.55■□□□□ 0.88
Limch1Q3UH68 Tmed4-201ENSMUST00000004508 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Limch1Q3UH68 4930519A11Rik-201ENSMUST00000181381 1523 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Limch1Q3UH68 Gtf2a2-204ENSMUST00000119905 622 ntTSL 2 BASIC20.55■□□□□ 0.88
Limch1Q3UH68 Gm20695-202ENSMUST00000176233 1012 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
Limch1Q3UH68 Cldn14-205ENSMUST00000177648 1266 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
Limch1Q3UH68 Gm29791-202ENSMUST00000207888 369 ntBASIC20.55■□□□□ 0.88
Limch1Q3UH68 Foxo3-204ENSMUST00000175881 2535 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Limch1Q3UH68 Polr3d-201ENSMUST00000000793 2016 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Limch1Q3UH68 Pced1a-202ENSMUST00000110277 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Limch1Q3UH68 Spock1-201ENSMUST00000172326 1320 ntAPPRIS P3 TSL 5 BASIC20.54■□□□□ 0.88
Limch1Q3UH68 Ankrd22-201ENSMUST00000025686 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Limch1Q3UH68 Ncam2-202ENSMUST00000067602 3563 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Limch1Q3UH68 Atp2a2-201ENSMUST00000031423 4486 ntAPPRIS P4 TSL 1 (best) BASIC20.54■□□□□ 0.88
Limch1Q3UH68 Myrip-201ENSMUST00000048121 4906 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Limch1Q3UH68 Tnnt2-202ENSMUST00000112085 1076 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
Limch1Q3UH68 Tnnt2-203ENSMUST00000112086 1094 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
Limch1Q3UH68 Tnnt2-204ENSMUST00000112087 1112 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
Limch1Q3UH68 U2af1-201ENSMUST00000014684 907 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
Limch1Q3UH68 Fev-202ENSMUST00000159232 928 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Limch1Q3UH68 U2af1-202ENSMUST00000166526 907 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
Limch1Q3UH68 Mir2861-201ENSMUST00000175539 82 ntBASIC20.54■□□□□ 0.88
Limch1Q3UH68 Tnnt2-206ENSMUST00000178854 1076 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
Limch1Q3UH68 Cpne1-217ENSMUST00000184265 871 ntTSL 5 BASIC20.54■□□□□ 0.88
Limch1Q3UH68 Tnnt2-211ENSMUST00000189355 1112 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
Limch1Q3UH68 Tnnt2-212ENSMUST00000189732 1123 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
Limch1Q3UH68 Fgfr1op2-202ENSMUST00000058245 918 ntTSL 2 BASIC20.54■□□□□ 0.88
Limch1Q3UH68 Med9-201ENSMUST00000081980 1920 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Limch1Q3UH68 Gm26885-201ENSMUST00000181920 1688 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Limch1Q3UH68 Il17re-203ENSMUST00000101065 1973 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Limch1Q3UH68 Cdc14b-201ENSMUST00000039318 5859 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
Limch1Q3UH68 Tmf1-201ENSMUST00000095664 5732 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Limch1Q3UH68 Rbpms-213ENSMUST00000191473 2547 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Limch1Q3UH68 Elac2-203ENSMUST00000108697 2612 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
Limch1Q3UH68 Hmbox1-203ENSMUST00000175744 1771 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Limch1Q3UH68 Gm27029-202ENSMUST00000107259 1855 ntAPPRIS P5 TSL 5 BASIC20.53■□□□□ 0.88
Limch1Q3UH68 Rnf112-202ENSMUST00000060255 3161 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Limch1Q3UH68 Gna11-201ENSMUST00000043604 3414 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Limch1Q3UH68 Retreg1-201ENSMUST00000022881 3248 ntTSL 5 BASIC20.53■□□□□ 0.88
Limch1Q3UH68 Ostm1-201ENSMUST00000040718 3006 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Limch1Q3UH68 Naa60-212ENSMUST00000186375 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Limch1Q3UH68 Haus8-201ENSMUST00000035960 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Limch1Q3UH68 Prpsap1-201ENSMUST00000106391 1841 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Limch1Q3UH68 Ngb-201ENSMUST00000021420 1616 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
Limch1Q3UH68 Atad2b-201ENSMUST00000045664 8035 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
Limch1Q3UH68 K230015D01Rik-201ENSMUST00000211969 1516 ntBASIC20.53■□□□□ 0.88
Limch1Q3UH68 Fst-201ENSMUST00000022287 2556 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Limch1Q3UH68 Fam46c-201ENSMUST00000061455 5640 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Limch1Q3UH68 Itsn1-205ENSMUST00000113996 5147 ntTSL 5 BASIC20.52■□□□□ 0.88
Limch1Q3UH68 4930426D05Rik-202ENSMUST00000139804 1650 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Limch1Q3UH68 B3gnt9-202ENSMUST00000136822 2516 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
Limch1Q3UH68 Matn4-202ENSMUST00000103104 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Limch1Q3UH68 Gm10418-201ENSMUST00000100943 576 ntBASIC20.52■□□□□ 0.88
Limch1Q3UH68 Zpbp2-205ENSMUST00000107513 1240 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
Limch1Q3UH68 Alkbh1-212ENSMUST00000185301 408 ntBASIC20.52■□□□□ 0.88
Limch1Q3UH68 Pomc-204ENSMUST00000219543 1043 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Limch1Q3UH68 Tsks-201ENSMUST00000080233 1806 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
Limch1Q3UH68 Olfr94-203ENSMUST00000222190 1611 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
Limch1Q3UH68 Fam104a-201ENSMUST00000120194 2619 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
Limch1Q3UH68 Tbx3os2-201ENSMUST00000135385 1345 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
Limch1Q3UH68 Whrn-205ENSMUST00000095038 2665 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Limch1Q3UH68 Gm37820-201ENSMUST00000194021 2147 ntBASIC20.51■□□□□ 0.87
Limch1Q3UH68 Actr3-201ENSMUST00000027579 2554 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
Limch1Q3UH68 Ssfa2-203ENSMUST00000111788 4976 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
Limch1Q3UH68 Psmd6-201ENSMUST00000022256 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Limch1Q3UH68 Josd2-203ENSMUST00000118493 922 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
Limch1Q3UH68 Crabp1-201ENSMUST00000034830 802 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Limch1Q3UH68 Col4a3bp-201ENSMUST00000077672 2746 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Limch1Q3UH68 Rbmxl1-201ENSMUST00000049245 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Limch1Q3UH68 Eif4enif1-203ENSMUST00000110049 3614 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Limch1Q3UH68 Ola1-201ENSMUST00000028517 2175 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Limch1Q3UH68 Rab1a-201ENSMUST00000020358 2827 ntAPPRIS ALT1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Limch1Q3UH68 Atp11a-202ENSMUST00000091237 7443 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
Limch1Q3UH68 Cdk19-201ENSMUST00000044672 5807 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Limch1Q3UH68 Cables1-201ENSMUST00000046948 3202 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
Limch1Q3UH68 Serinc2-201ENSMUST00000105996 1878 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
Retrieved 100 of 76,532 protein–RNA pairs in 36.7 ms