Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Gm27525-201ENSMUST00000184465 107 ntBASIC22.23■■□□□ 1.15
Ddb1Q3U1J4 Arl5b-206ENSMUST00000193836 481 ntTSL 2 BASIC22.23■■□□□ 1.15
Ddb1Q3U1J4 Gm18195-201ENSMUST00000207604 706 ntBASIC22.23■■□□□ 1.15
Ddb1Q3U1J4 Ddost-201ENSMUST00000030538 2120 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Ddb1Q3U1J4 Gm7729-201ENSMUST00000050143 801 ntBASIC22.23■■□□□ 1.15
Ddb1Q3U1J4 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC22.23■■□□□ 1.15
Ddb1Q3U1J4 Serpinh1-202ENSMUST00000169437 2274 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Ddb1Q3U1J4 Sept5-201ENSMUST00000096987 2127 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Ddb1Q3U1J4 Ptpmt1-203ENSMUST00000125001 3183 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
Ddb1Q3U1J4 Twist2-202ENSMUST00000186075 2525 ntAPPRIS P1 BASIC22.22■■□□□ 1.15
Ddb1Q3U1J4 Speg-202ENSMUST00000113587 1254 ntTSL 5 BASIC22.22■■□□□ 1.15
Ddb1Q3U1J4 Gm37935-201ENSMUST00000192012 982 ntBASIC22.22■■□□□ 1.15
Ddb1Q3U1J4 4931422A03Rik-201ENSMUST00000056170 1037 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Ddb1Q3U1J4 Hist1h4j-201ENSMUST00000087714 774 ntAPPRIS P1 BASIC22.22■■□□□ 1.15
Ddb1Q3U1J4 Derl3-202ENSMUST00000217811 1316 ntAPPRIS ALT2 TSL 1 (best) BASIC22.22■■□□□ 1.15
Ddb1Q3U1J4 Tsc22d1-201ENSMUST00000022587 1762 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Ddb1Q3U1J4 Sbf2-213ENSMUST00000171218 1476 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
Ddb1Q3U1J4 Hspbp1-201ENSMUST00000079970 1593 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Ddb1Q3U1J4 Atg16l2-202ENSMUST00000122116 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC22.21■■□□□ 1.15
Ddb1Q3U1J4 Pde7a-202ENSMUST00000099195 6298 ntAPPRIS ALT1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Ddb1Q3U1J4 Enkd1-201ENSMUST00000013299 1275 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Ddb1Q3U1J4 Acaa1a-203ENSMUST00000175743 1219 ntTSL 5 BASIC22.21■■□□□ 1.15
Ddb1Q3U1J4 Acaa1a-207ENSMUST00000176397 996 ntTSL 5 BASIC22.21■■□□□ 1.15
Ddb1Q3U1J4 Ndufaf8-202ENSMUST00000185558 427 ntTSL 5 BASIC22.21■■□□□ 1.15
Ddb1Q3U1J4 Gm5712-201ENSMUST00000199748 1043 ntBASIC22.21■■□□□ 1.15
Ddb1Q3U1J4 Gm18206-201ENSMUST00000207027 926 ntBASIC22.21■■□□□ 1.15
Ddb1Q3U1J4 Cebpzos-201ENSMUST00000063817 753 ntAPPRIS P1 TSL 2 BASIC22.21■■□□□ 1.15
Ddb1Q3U1J4 Hes3-201ENSMUST00000094438 1829 ntAPPRIS P2 TSL 1 (best) BASIC22.21■■□□□ 1.15
Ddb1Q3U1J4 Kif1bp-202ENSMUST00000159704 2622 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
Ddb1Q3U1J4 Ltk-202ENSMUST00000082130 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC22.21■■□□□ 1.15
Ddb1Q3U1J4 4930474H06Rik-201ENSMUST00000132822 1590 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
Ddb1Q3U1J4 Adprh-201ENSMUST00000002923 1583 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Ddb1Q3U1J4 Sirt7-201ENSMUST00000080202 1727 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Ddb1Q3U1J4 Tk2-201ENSMUST00000050211 2406 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Ddb1Q3U1J4 Arfrp1-209ENSMUST00000170190 2483 ntTSL 5 BASIC22.2■■□□□ 1.14
Ddb1Q3U1J4 Cd164l2-201ENSMUST00000105910 986 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Ddb1Q3U1J4 Hnrnpa1l2-ps-201ENSMUST00000129154 964 ntBASIC22.2■■□□□ 1.14
Ddb1Q3U1J4 Dusp13-208ENSMUST00000183698 1019 ntTSL 5 BASIC22.2■■□□□ 1.14
Ddb1Q3U1J4 Zfp747-202ENSMUST00000205832 618 ntTSL 3 BASIC22.2■■□□□ 1.14
Ddb1Q3U1J4 AC132104.2-201ENSMUST00000215011 266 ntBASIC22.2■■□□□ 1.14
Ddb1Q3U1J4 AC159301.1-201ENSMUST00000225130 1182 ntBASIC22.2■■□□□ 1.14
Ddb1Q3U1J4 Prdx6-201ENSMUST00000051925 959 ntTSL 2 BASIC22.2■■□□□ 1.14
Ddb1Q3U1J4 Cenpw-201ENSMUST00000099985 1532 ntAPPRIS P2 TSL 1 (best) BASIC22.2■■□□□ 1.14
Ddb1Q3U1J4 Nipsnap3b-201ENSMUST00000015391 1552 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Ddb1Q3U1J4 Pthlh-201ENSMUST00000052296 1603 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Ddb1Q3U1J4 Coro1a-201ENSMUST00000032949 1660 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Ddb1Q3U1J4 Irf3-213ENSMUST00000209066 1712 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Ddb1Q3U1J4 Agap2-201ENSMUST00000039259 5633 ntAPPRIS P2 TSL 1 (best) BASIC22.19■■□□□ 1.14
Ddb1Q3U1J4 Bhlhe23-201ENSMUST00000108878 2520 ntAPPRIS P1 BASIC22.19■■□□□ 1.14
Ddb1Q3U1J4 Oraov1-203ENSMUST00000105895 1016 ntAPPRIS ALT2 TSL 2 BASIC22.19■■□□□ 1.14
Ddb1Q3U1J4 Pih1d1-202ENSMUST00000107811 1072 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Ddb1Q3U1J4 2210408F21Rik-212ENSMUST00000152157 490 ntTSL 2 BASIC22.19■■□□□ 1.14
Ddb1Q3U1J4 Syne4-208ENSMUST00000176304 1006 ntAPPRIS ALT2 TSL 5 BASIC22.19■■□□□ 1.14
Ddb1Q3U1J4 1600014C10Rik-209ENSMUST00000179992 568 ntTSL 3 BASIC22.19■■□□□ 1.14
Ddb1Q3U1J4 Ssr2-205ENSMUST00000193934 569 ntTSL 3 BASIC22.19■■□□□ 1.14
Ddb1Q3U1J4 Ifi27l2a-201ENSMUST00000055071 463 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Ddb1Q3U1J4 Gm9991-201ENSMUST00000070048 1207 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
Ddb1Q3U1J4 4933434E20Rik-209ENSMUST00000162114 1411 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
Ddb1Q3U1J4 Rdx-202ENSMUST00000061352 1502 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
Ddb1Q3U1J4 Fbxo17-203ENSMUST00000108279 1563 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
Ddb1Q3U1J4 Fgf17-201ENSMUST00000022697 1689 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Ddb1Q3U1J4 Ankle1-201ENSMUST00000119976 2136 ntAPPRIS P3 TSL 1 (best) BASIC22.19■■□□□ 1.14
Ddb1Q3U1J4 Ints6-201ENSMUST00000053959 4993 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Ddb1Q3U1J4 2310022B05Rik-201ENSMUST00000034464 3307 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Ddb1Q3U1J4 Rabgap1l-201ENSMUST00000028049 2748 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Ddb1Q3U1J4 Lrch4-204ENSMUST00000176667 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
Ddb1Q3U1J4 Cnbp-208ENSMUST00000204653 2175 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
Ddb1Q3U1J4 AC163637.2-201ENSMUST00000213826 1945 ntAPPRIS P1 TSL 2 BASIC22.18■■□□□ 1.14
Ddb1Q3U1J4 Prps1l3-201ENSMUST00000139049 1720 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Ddb1Q3U1J4 Tmem81-201ENSMUST00000058167 1742 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Ddb1Q3U1J4 Fhdc1-205ENSMUST00000194027 1648 ntTSL 5 BASIC22.18■■□□□ 1.14
Ddb1Q3U1J4 1700020A23Rik-202ENSMUST00000110281 521 ntAPPRIS P1 TSL 3 BASIC22.18■■□□□ 1.14
Ddb1Q3U1J4 AC148328.1-201ENSMUST00000216448 920 ntTSL 5 BASIC22.18■■□□□ 1.14
Ddb1Q3U1J4 Mrpl36-202ENSMUST00000221730 717 ntAPPRIS P1 TSL 3 BASIC22.18■■□□□ 1.14
Ddb1Q3U1J4 Mgat2-201ENSMUST00000060579 2614 ntAPPRIS P1 BASIC22.18■■□□□ 1.14
Ddb1Q3U1J4 Hnrnpf-202ENSMUST00000163168 2401 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Ddb1Q3U1J4 Htra3-202ENSMUST00000114233 1901 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
Ddb1Q3U1J4 Gcat-202ENSMUST00000171999 1763 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
Ddb1Q3U1J4 Gtf2h4-201ENSMUST00000001565 1679 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Ddb1Q3U1J4 Exoc5-206ENSMUST00000161504 2582 ntTSL 5 BASIC22.17■■□□□ 1.14
Ddb1Q3U1J4 Cyp26b1-203ENSMUST00000204109 1340 ntTSL 5 BASIC22.17■■□□□ 1.14
Ddb1Q3U1J4 Scpep1os-201ENSMUST00000139592 811 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
Ddb1Q3U1J4 Inpp5a-203ENSMUST00000106098 2826 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Ddb1Q3U1J4 Spire1-203ENSMUST00000115050 5405 ntAPPRIS ALT2 TSL 1 (best) BASIC22.17■■□□□ 1.14
Ddb1Q3U1J4 Ism1-201ENSMUST00000099307 2944 ntTSL 5 BASIC22.17■■□□□ 1.14
Ddb1Q3U1J4 Grk6-202ENSMUST00000099482 2169 ntAPPRIS P3 TSL 1 (best) BASIC22.16■■□□□ 1.14
Ddb1Q3U1J4 Lhx6-208ENSMUST00000148852 1481 ntTSL 5 BASIC22.16■■□□□ 1.14
Ddb1Q3U1J4 Fnbp1-205ENSMUST00000113552 1910 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
Ddb1Q3U1J4 Gmnn-202ENSMUST00000110382 963 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Ddb1Q3U1J4 Magi3-201ENSMUST00000064371 6640 ntAPPRIS P3 TSL 1 (best) BASIC22.16■■□□□ 1.14
Ddb1Q3U1J4 Proc-201ENSMUST00000171765 1566 ntAPPRIS P1 TSL 5 BASIC22.16■■□□□ 1.14
Ddb1Q3U1J4 Nlrp5-ps-201ENSMUST00000044683 1913 ntTSL 2 BASIC22.16■■□□□ 1.14
Ddb1Q3U1J4 Gnb2-203ENSMUST00000111023 1471 ntTSL 5 BASIC22.15■■□□□ 1.14
Ddb1Q3U1J4 Rad23a-202ENSMUST00000109761 1842 ntAPPRIS ALT1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Ddb1Q3U1J4 Camk2b-202ENSMUST00000019133 2223 ntTSL 5 BASIC22.15■■□□□ 1.14
Ddb1Q3U1J4 Gm21586-201ENSMUST00000107988 264 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Ddb1Q3U1J4 Gm21953-201ENSMUST00000108002 264 ntAPPRIS P1 TSL 5 BASIC22.15■■□□□ 1.14
Ddb1Q3U1J4 Dgcr6-208ENSMUST00000153123 920 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
Ddb1Q3U1J4 Pafah1b3-207ENSMUST00000155118 679 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
Ddb1Q3U1J4 Gm20878-208ENSMUST00000181518 264 ntAPPRIS P2 TSL 1 (best) BASIC22.15■■□□□ 1.14
Retrieved 100 of 76,532 protein–RNA pairs in 25.9 ms