Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Trp73-203ENSMUST00000105643 1916 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
Col3a1P08121 Nr1h2-202ENSMUST00000107910 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Col3a1P08121 Dexi-203ENSMUST00000184863 2537 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
Col3a1P08121 Ythdf1-201ENSMUST00000037299 3184 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Col3a1P08121 Gm37711-201ENSMUST00000194907 1749 ntTSL 5 BASIC20.92■□□□□ 0.94
Col3a1P08121 Ppp4r2-201ENSMUST00000063854 4874 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Col3a1P08121 Fzd5-202ENSMUST00000116133 2895 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Col3a1P08121 AU019823-202ENSMUST00000145139 2805 ntTSL 2 BASIC20.92■□□□□ 0.94
Col3a1P08121 Tm9sf2-203ENSMUST00000171318 1494 ntTSL 5 BASIC20.92■□□□□ 0.94
Col3a1P08121 Prss40-201ENSMUST00000047840 1275 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Col3a1P08121 Apbb1-219ENSMUST00000191601 2690 ntAPPRIS P4 TSL 5 BASIC20.92■□□□□ 0.94
Col3a1P08121 Pigw-201ENSMUST00000067058 2675 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Col3a1P08121 Pou3f1-201ENSMUST00000053491 3849 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
Col3a1P08121 Nfil3-201ENSMUST00000071065 2026 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Col3a1P08121 Spata18-202ENSMUST00000071077 1978 ntAPPRIS P2 TSL 5 BASIC20.92■□□□□ 0.94
Col3a1P08121 AC154855.1-201ENSMUST00000227353 1458 ntBASIC20.91■□□□□ 0.94
Col3a1P08121 Txnl4b-201ENSMUST00000034159 1890 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Col3a1P08121 Gm26697-201ENSMUST00000180898 1760 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Col3a1P08121 Tmem175-204ENSMUST00000146207 1686 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Col3a1P08121 Lamtor5-201ENSMUST00000145735 881 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Col3a1P08121 Mrpl14-201ENSMUST00000024734 645 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Col3a1P08121 Cldn22-201ENSMUST00000038693 995 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
Col3a1P08121 Nkx2-6-201ENSMUST00000062437 1134 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Col3a1P08121 Spata2l-202ENSMUST00000166768 2707 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Col3a1P08121 Dtnbp1-203ENSMUST00000220555 1589 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
Col3a1P08121 Adgrv1-207ENSMUST00000128585 2580 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Col3a1P08121 Tmie-201ENSMUST00000050958 2802 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Col3a1P08121 B3gnt2-202ENSMUST00000062844 3057 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Col3a1P08121 Dmtn-207ENSMUST00000228001 2437 ntBASIC20.91■□□□□ 0.94
Col3a1P08121 Rnf208-202ENSMUST00000114355 1333 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
Col3a1P08121 Hmgb3-202ENSMUST00000072699 1571 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Col3a1P08121 Foxf1-201ENSMUST00000181504 2415 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Col3a1P08121 Rpl14-201ENSMUST00000165532 1009 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Col3a1P08121 Gm28793-201ENSMUST00000190845 413 ntTSL 5 BASIC20.9■□□□□ 0.94
Col3a1P08121 Slc35d2-204ENSMUST00000222168 472 ntTSL 3 BASIC20.9■□□□□ 0.94
Col3a1P08121 Sox6os-201ENSMUST00000032900 420 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Col3a1P08121 Rac1-202ENSMUST00000100489 2325 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Col3a1P08121 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
Col3a1P08121 2810408A11Rik-203ENSMUST00000102580 1640 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
Col3a1P08121 Trpc4ap-202ENSMUST00000103140 3091 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
Col3a1P08121 Meox1-201ENSMUST00000057054 2228 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Col3a1P08121 Utp23-204ENSMUST00000161651 582 ntTSL 5 BASIC20.89■□□□□ 0.94
Col3a1P08121 Gm43791-201ENSMUST00000202914 468 ntTSL 5 BASIC20.89■□□□□ 0.94
Col3a1P08121 Sim1-202ENSMUST00000219436 1687 ntTSL 5 BASIC20.89■□□□□ 0.93
Col3a1P08121 Sox30-201ENSMUST00000049038 2997 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Col3a1P08121 Maneal-201ENSMUST00000064444 2727 ntAPPRIS P1 TSL 3 BASIC20.89■□□□□ 0.93
Col3a1P08121 Zdhhc16-201ENSMUST00000026154 1821 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Col3a1P08121 Larp1b-202ENSMUST00000048490 2354 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
Col3a1P08121 Fam71e1-202ENSMUST00000205359 1307 ntAPPRIS ALT2 TSL 2 BASIC20.89■□□□□ 0.93
Col3a1P08121 Mrpl37-201ENSMUST00000030365 1498 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Col3a1P08121 Dbndd2-204ENSMUST00000109350 1055 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
Col3a1P08121 AC156832.2-201ENSMUST00000216217 1295 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Col3a1P08121 Taar2-201ENSMUST00000079134 1020 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Col3a1P08121 Pacs2-207ENSMUST00000223502 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Col3a1P08121 Rasd1-201ENSMUST00000062405 1611 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Col3a1P08121 Ube2d1-201ENSMUST00000020085 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Col3a1P08121 Esyt2-201ENSMUST00000100986 5560 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Col3a1P08121 Psmd8-203ENSMUST00000186182 1512 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Col3a1P08121 Trmo-201ENSMUST00000030015 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Col3a1P08121 Gm16897-201ENSMUST00000180780 2492 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Col3a1P08121 Atp5g1-202ENSMUST00000107684 596 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Col3a1P08121 Gm15545-203ENSMUST00000150613 1059 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Col3a1P08121 Ak6-201ENSMUST00000022135 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Col3a1P08121 Coq7-201ENSMUST00000032887 914 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Col3a1P08121 Gm44618-201ENSMUST00000208431 2262 ntTSL 3 BASIC20.87■□□□□ 0.93
Col3a1P08121 Prmt2-202ENSMUST00000099571 2052 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
Col3a1P08121 Gm42939-201ENSMUST00000197514 2205 ntBASIC20.87■□□□□ 0.93
Col3a1P08121 2810425M01Rik-201ENSMUST00000180790 1850 ntTSL 5 BASIC20.87■□□□□ 0.93
Col3a1P08121 Racgap1-213ENSMUST00000171702 3052 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Col3a1P08121 Sirt1-207ENSMUST00000177694 3353 ntTSL 5 BASIC20.87■□□□□ 0.93
Col3a1P08121 Map6-206ENSMUST00000208605 2275 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Col3a1P08121 Rab43-203ENSMUST00000078647 4605 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Col3a1P08121 Hoxa10-201ENSMUST00000121043 1436 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
Col3a1P08121 Samd13-205ENSMUST00000197989 591 ntTSL 5 BASIC20.87■□□□□ 0.93
Col3a1P08121 6330411D24Rik-201ENSMUST00000211105 1568 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Col3a1P08121 Tmem35b-201ENSMUST00000094712 1120 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Col3a1P08121 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Col3a1P08121 Acot7-206ENSMUST00000167926 1505 ntAPPRIS P4 TSL 1 (best) BASIC20.86■□□□□ 0.93
Col3a1P08121 Cdk10-201ENSMUST00000036880 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Col3a1P08121 Nit1-202ENSMUST00000111295 1335 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
Col3a1P08121 Wtap-205ENSMUST00000160781 2442 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Col3a1P08121 Ano10-206ENSMUST00000216670 2108 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Col3a1P08121 Gm16712-201ENSMUST00000181962 1960 ntTSL 2 BASIC20.86■□□□□ 0.93
Col3a1P08121 Prdm6-203ENSMUST00000115399 2227 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Col3a1P08121 Npb-202ENSMUST00000106194 530 ntAPPRIS ALT2 TSL 2 BASIC20.86■□□□□ 0.93
Col3a1P08121 Npb-203ENSMUST00000106195 542 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
Col3a1P08121 Gm18958-201ENSMUST00000174258 762 ntBASIC20.86■□□□□ 0.93
Col3a1P08121 Gm29518-201ENSMUST00000190858 372 ntBASIC20.86■□□□□ 0.93
Col3a1P08121 Shc3-203ENSMUST00000223543 1241 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Col3a1P08121 Smim15-205ENSMUST00000225972 2097 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
Col3a1P08121 Wnt10b-207ENSMUST00000228594 1510 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
Col3a1P08121 Camsap3-212ENSMUST00000208240 2572 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Col3a1P08121 Paqr7-201ENSMUST00000081525 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Col3a1P08121 Fkbp5-201ENSMUST00000079413 3542 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Col3a1P08121 Ino80e-201ENSMUST00000050833 1944 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Col3a1P08121 Khdrbs2-201ENSMUST00000027226 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Col3a1P08121 Ndufb11-201ENSMUST00000116621 908 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Col3a1P08121 Gm44973-201ENSMUST00000207050 1003 ntAPPRIS P1 TSL 3 BASIC20.85■□□□□ 0.93
Col3a1P08121 1700022H01Rik-201ENSMUST00000219142 387 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Col3a1P08121 Pdrg1-201ENSMUST00000028972 1273 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Retrieved 100 of 76,532 protein–RNA pairs in 51.6 ms